Basic Information

Insect: Melipona beecheii
Gene Symbol: -
Assembly: GCA_032399605.1
Location: JAUCMO010000507.1:13579360-13584095[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00045 0.037 14.6 4.1 1 23 268 290 268 290 0.97

2 11 1.4e-05 0.0011 19.4 1.5 1 23 296 318 296 318 0.98

3 11 0.001 0.085 13.5 3.8 1 23 324 347 324 347 0.95

4 11 0.014 1.1 9.9 5.2 1 21 353 373 353 375 0.95

5 11 0.00014 0.011 16.2 1.9 1 23 381 403 381 403 0.99

6 11 7.9e-05 0.0065 17.0 0.8 1 23 409 431 409 431 0.98

7 11 0.00035 0.029 14.9 1.4 1 23 439 462 439 462 0.97

8 11 3.8e-05 0.0031 18.0 2.6 2 23 469 490 468 490 0.97

9 11 0.00014 0.011 16.2 0.3 1 23 496 518 496 518 0.99

10 11 0.0037 0.3 11.7 7.3 1 19 524 542 524 547 0.91

11 11 1.5e-07 1.3e-05 25.5 1.2 1 23 561 583 561 583 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00045	0.037	14.6	4.1	1	23	268	290	268	290	0.97
2	11	1.4e-05	0.0011	19.4	1.5	1	23	296	318	296	318	0.98
3	11	0.001	0.085	13.5	3.8	1	23	324	347	324	347	0.95
4	11	0.014	1.1	9.9	5.2	1	21	353	373	353	375	0.95
5	11	0.00014	0.011	16.2	1.9	1	23	381	403	381	403	0.99
6	11	7.9e-05	0.0065	17.0	0.8	1	23	409	431	409	431	0.98
7	11	0.00035	0.029	14.9	1.4	1	23	439	462	439	462	0.97
8	11	3.8e-05	0.0031	18.0	2.6	2	23	469	490	468	490	0.97
9	11	0.00014	0.011	16.2	0.3	1	23	496	518	496	518	0.99
10	11	0.0037	0.3	11.7	7.3	1	19	524	542	524	547	0.91
11	11	1.5e-07	1.3e-05	25.5	1.2	1	23	561	583	561	583	0.98

Sequence Information

Coding Sequence: ATGACGAGTGACGCGTGCCAGTGCGCAGCTATCAACGCGCAGCATTTGAACATTCGTAGTTCGATCGGCCATATTGTCCTCCCGGGTCTTACACAACGCCCTCACACGAACGTTCTCGACTTTATGAGTAACGTAGCAACGATCAAGTTAGAAGAGGGACAAGAATCTGTAACAGAGATACAGACTTATTTAGAAACATTTAACAAAGAGATAGAGGGAGGTCAAGGAGAGCAATTGCAACATGTACAGTTGCAACAGGTGGAAGGATTGTCAGGTGGAGAGGAAGGTGGAACTTACTTTGTTGACCAATCTGgtcaatattattatcaagCGAGTAGTGACGAAACACCTGTGATGACACAAGTGCAAATTCAAGAAGTAGAAGAAGCAGATGTACAAAATGAGGGCGAGGCACCTCAAGAAGAACAATATaacgaaattgaagaattagaaaatgttGATGGTGATGAAGATGGTCAGGTAACCAATAATGGAAATAATCAGGTTGTAATCAATTCTGGAGATGCATATCAAACAGTTACCATTGTACCATCAGATACCAATCCTGGTGAAGTTAGTTATGTGTTAATAGTTCAACAACCTGATGCTGAAGATAAGGAAAGCAGACCAGTAGAACGAGAGGCAACGGAAGgtgaagaaggagaaggagaacaAGATCTTACTGTTTATGACTTCGAAGATAATGAAGATAACGAAGCACCTGTGGAATCGGAAGCAGAAGATGATAAaaccaaaattattaaattcctaCCTAAAAAATCACAAACTGTTACTCAAGCTCACATGTGTAATTACTGTAACTACACAAGTCCAAAAcgATATCTGTTATCACGTCATATGAAATCGCATTCTGAGGAAAGACCACATAAATGTAGTGTTTGCGAGAGAGGATTTAAGACATTAGCTTCACTTCAAAATCATGTTAATACACATACTGGGACCAAACCACatcattgtaaattttgtgATAGTGCATTCACAACCTCCGgCGAACTTGTCAGACATGTCCGATATAGGCATACTCACGAAAAGCCACATAAATGTCATGAATGTGACTATGCATCTGTTGAATTGTCTAAACTTAAACGTCATATTCGATGTCATACAGGCGAACGTCCATATCAGtGTCCACATTGTACATATGCAAGTCCTGATACTTTTAAACTAAAACGACATTTGCGCATACATACAGGAGAAAAACCATATGAGTGTGACTTTTGTCAGGCAAGGTTTACTCAATCCAATAGCTTAAAAGCTCACAAATTGATACATAACGTTGGCGATAAACCAGTATTTCAATGTGAATTATGTCCAACGACGTGTGGAAGAAAAACAGATCTAAGAATTcatgtacaaaaattacataccTCTGATAAACCTTTGAAATGTAAACGCTGTGGAAAAACATTCCCAGACAGATATAGCTACAAGTTGCACAGTAAAACACACGAAGGAGAAAAGTGTTATAAATGTGATTTGTGCCCATATGCTTCTATATCTGCGCGTCATCTCGAGAGCCACATGTTAATTCATACTGATCAGAAACCATATCAATGTGATCATTGCTTTCAATCATTCAGGCAAAAACAACTTCTCAAACGgcattgtaatttatatcataatcCTTCTTATGTTCCCCCTCCACCACAAGAGAAGACACATCAGTGTCCTGAATGTGAACGGCCGTTTAGACATAAAGGAAATCTTATTCGGCACATGGCTGTTCATGATCCAGAATCATCTCTTCAAGAAAAACAACAAGCACTGAAGATGGGCAGACagaaaaaaatccaaattATAGATGGGCAAAGAATTGAAGTTATGACAGGTGATTTAGCTTCTAAACTTAAAGGttatgaagaagaagaagaagatgaagatgaCATGATGGCGGTCGAAGGAAGCGATGGTCAACAGTACGTTGTATTGGAAGTCATACAATTAGCTGACAATCAAGGAACGGATCAGCAGATGGCCGTTGTAGCCAGCGAAGATGGAGATTTAGTGATGCAAGATCCTCTGAGTCAAGAAAGTGGGATTGTGACTGGTACAGGCGAAGAGGCGGATGAagcagaggaagaagaaatcgaAATAGATCAATTGAAAATGGAACCAGGTACACCCAATAAATCTTCATCTCAAAACACGCAAAGTGATCCAAAGTTacagaaagaaatggaaaccTGTTTCGGTTTTGACGAAgaagaagaagaagaagaagaagaggccAATgctaacataaatatattgcaGACAATTTCGTAA
Protein Sequence: MTSDACQCAAINAQHLNIRSSIGHIVLPGLTQRPHTNVLDFMSNVATIKLEEGQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQASSDETPVMTQVQIQEVEEADVQNEGEAPQEEQYNEIEELENVDGDEDGQVTNNGNNQVVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPDAEDKESRPVEREATEGEEGEGEQDLTVYDFEDNEDNEAPVESEAEDDKTKIIKFLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCQARFTQSNSLKAHKLIHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERPFRHKGNLIRHMAVHDPESSLQEKQQALKMGRQKKIQIIDGQRIEVMTGDLASKLKGYEEEEEDEDDMMAVEGSDGQQYVVLEVIQLADNQGTDQQMAVVASEDGDLVMQDPLSQESGIVTGTGEEADEAEEEEIEIDQLKMEPGTPNKSSSQNTQSDPKLQKEMETCFGFDEEEEEEEEEANANINILQTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730251;
90% Identity: iTF_01421078;
80% Identity: -