Basic Information

Insect: Melipona beecheii
Gene Symbol: -
Assembly: GCA_032399605.1
Location: JAUCMO010000501.1:8156646-8159642[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00034 0.028 15.0 0.4 2 23 256 277 255 277 0.95

2 11 0.0038 0.31 11.7 0.9 1 23 285 308 285 308 0.95

3 11 0.00017 0.014 15.9 2.3 1 23 364 386 364 386 0.98

4 11 1.9e-06 0.00016 22.1 1.5 2 23 436 457 435 457 0.97

5 11 1.7e-05 0.0014 19.1 0.8 1 23 462 485 462 485 0.96

6 11 4.8e-06 0.00039 20.8 0.3 1 23 522 544 522 544 0.98

7 11 8.1e-07 6.7e-05 23.3 0.9 1 23 554 576 554 576 0.96

8 11 2.3e-06 0.00019 21.8 1.2 1 23 582 604 582 604 0.99

9 11 1.2e-05 0.00095 19.6 0.2 1 23 610 632 610 632 0.98

10 11 8.7e-05 0.0072 16.9 4.6 1 23 638 660 638 660 0.98

11 11 0.00035 0.028 15.0 0.4 1 21 666 686 666 687 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00034	0.028	15.0	0.4	2	23	256	277	255	277	0.95
2	11	0.0038	0.31	11.7	0.9	1	23	285	308	285	308	0.95
3	11	0.00017	0.014	15.9	2.3	1	23	364	386	364	386	0.98
4	11	1.9e-06	0.00016	22.1	1.5	2	23	436	457	435	457	0.97
5	11	1.7e-05	0.0014	19.1	0.8	1	23	462	485	462	485	0.96
6	11	4.8e-06	0.00039	20.8	0.3	1	23	522	544	522	544	0.98
7	11	8.1e-07	6.7e-05	23.3	0.9	1	23	554	576	554	576	0.96
8	11	2.3e-06	0.00019	21.8	1.2	1	23	582	604	582	604	0.99
9	11	1.2e-05	0.00095	19.6	0.2	1	23	610	632	610	632	0.98
10	11	8.7e-05	0.0072	16.9	4.6	1	23	638	660	638	660	0.98
11	11	0.00035	0.028	15.0	0.4	1	21	666	686	666	687	0.94

Sequence Information

Coding Sequence: ATGgaagttttaaaaaacgaGCAATTAGTTGATACGTATGAGAAAATTTATGGAGACGAATGCCGAATCTGTTTGAAAAGGGCTGTTGAAATTTGTGAACTTTTTAGAAATGGGGACACTATTCCTCGAAAACTTATGGCCGTTGCTTCTGTACAGATTGAAGAAGGAGATGGTTTACCACCAGTGATCTGTTTGCCTTGTAATCAGCGTTTAGATGCATCTTATGATTTTAAATgtcaaatacaaaattcagATGAAAAGCTTCGTCAAATTCTAAAGCTAAAATCATCTTCCAATGGTTCTGTTACCAGTGCCAGTATAGTTACAGCAATAATTGCTGATGTGATATCTAGTGTAATATCTtccgagaaagaaaatacagaaaagCAAGAACTTTGTGCTACAAATTTTTGTcctgataatttttgtttcactaAAGATGAAACTTCTTTCTGTCTCAattcagagaaaaatttattttgttatgaaaaagaatcacagaatgaattaaatgatatagaacaaagaaagaatctAGAAGATGCAAATGTTTACAAAAGTTTATTAGAGGATGAGTCTGTAAGGCAAATCAGTTCAATGAAACAAGACTTTGCTTTATTGGATGATCATGTGATacaaattaaagatatttcattaaaggaagaagaaagtgtTGAAGAAAATCAACAAATAGAAGAGACATCAAAGAtagataatattcaaaatgatgAAGAAAAACCATTAATTTCACGCACAACTAGATTACGTTGTACACAATGTATTAAGTCTTTTCGTACAAAAGTGGCCTTGCAGAGACATGCCATTGTACATAAACGTAAAACTAAATTACGTTATGTTTGTTATGTTTGTGATAAACAATATTCTACCCttgcaaaagtaaaaaatcatGTTGCAATTTGTCATGAAGCTCatgatagaaaagaaaatattcaacataagagaattaattatgagcaaaataaaacaataacgAGTGTACAAGATAAAAGAATTAGTAATGTTCAAgacaagaaaataaaaattcagaaaactGATGATTCTTCTAAAGAACAACGAAAAAGCCTAAAATTTACTTGTGAAGTTTGTTCAAAGCAATTTACGTATCAAAAATCCTTTATTACACATGCTAAAAGTCATCCAGAGTATAAGTTTGAAGAATTGGATGATTCTTCCGAATGTTCAACAAAAGAAAGATCTACAGAAACTGttgaagacgaagaagaaaatgaagaagaggaagatgaAGAGGATGAGGAAGATGAGAATCTTCCAGCTGAAAGTTTACAATGCACTCAATgtggaaaattatttgcaacaaaGAGAAATCTCAAGAGGCATGTTTCTACACATAGTGGATTAAAGTATACGTGTGAAACGTGTGGTAAAGGATTTTCAAGAGtggataaattaaaagatcatGAACAATCAAAACATAAGgctgaattatttgaaaattctgattTGGACGATAAAGAAGATATggacaatataaataaaggaGACTGTttagaaggaaaaaagaaaGATCGTCACAACAGACCTCATAAATGTGCAATTTGCCCTAAATCATTTGCACAAGCTCAATCACTAGCGAATCACATAGAACGTCATAAACGGGTGAAAGAAACTCAAAAAAGATTTCTTTGTGAAGTCTGCAGTAAGTGTTTTGCACAGAGTGGTTCTTTGGTTGCTCATATGCGTACACATACTGGAGTTAAACCATACGTTTGTAACGTATGTAGTAGAGCTTTTACAAAAAGCacttatttacaattacatttgcGCACTCATAGCGGAGAAAAACCTTATATTTGTCAGTATTGTAGCAGGGCTTTTGCGCGTGCTAATACATTAGCAAGGCACATAACAATGCATACAGGAGAAGCAAAATATCATTGTCAGATTTGTACAAAATCGTTTAGAAGACTGACTTCGTTAAATgaacatacatacacacacactgGACAAAGACCATATGcgtgtaaaatttgtacaaagagaTACAATAATGCTGGATCACTTTATGCACATAGAAAGAAGTGCAAGGCACAGCAGCTATCTAATCCTGGATTTGCGGTTTCTGTAGAAAATACTGTATCACAACAAGAAGTAGATGTTCCGCAAGTTTTGATTTATTCACACAGGAAACTAGTAGAGGATGCAACTGTTGGGCAAGTTACGCCCACGCCACAGTATATGATTGCAAACGTACATAATCAAAAGAATTTGGgatcaaatattatacagtCATTTCCAGTGGATGATCCAAATGTTTATACGAAGCCATTTAAGAACCCCTATTATACAATTTAcccaaatatgtaa
Protein Sequence: MEVLKNEQLVDTYEKIYGDECRICLKRAVEICELFRNGDTIPRKLMAVASVQIEEGDGLPPVICLPCNQRLDASYDFKCQIQNSDEKLRQILKLKSSSNGSVTSASIVTAIIADVISSVISSEKENTEKQELCATNFCPDNFCFTKDETSFCLNSEKNLFCYEKESQNELNDIEQRKNLEDANVYKSLLEDESVRQISSMKQDFALLDDHVIQIKDISLKEEESVEENQQIEETSKIDNIQNDEEKPLISRTTRLRCTQCIKSFRTKVALQRHAIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAICHEAHDRKENIQHKRINYEQNKTITSVQDKRISNVQDKKIKIQKTDDSSKEQRKSLKFTCEVCSKQFTYQKSFITHAKSHPEYKFEELDDSSECSTKERSTETVEDEEENEEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFENSDLDDKEDMDNINKGDCLEGKKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVENTVSQQEVDVPQVLIYSHRKLVEDATVGQVTPTPQYMIANVHNQKNLGSNIIQSFPVDDPNVYTKPFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_01417854;
80% Identity: -