Basic Information

Insect: Melipona beecheii
Gene Symbol: SALL1
Assembly: GCA_032399605.1
Location: JAUCMO010000463.1:9390751-9394000[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.11 9.1 7.1 7.6 1 23 32 55 32 55 0.96

2 20 3.9e-06 0.00032 21.1 0.3 1 23 61 83 61 83 0.97

3 20 2.4e-05 0.0019 18.6 1.4 1 23 89 111 89 111 0.97

4 20 0.002 0.16 12.6 0.2 1 23 117 139 117 139 0.96

5 20 8.6e-07 7e-05 23.2 4.7 1 23 145 168 145 168 0.98

6 20 0.00096 0.079 13.6 0.8 1 23 188 211 188 211 0.94

7 20 0.012 0.97 10.2 0.6 3 23 222 242 220 242 0.95

8 20 4e-06 0.00033 21.1 0.4 2 23 249 270 248 270 0.98

9 20 4.8e-06 0.0004 20.8 1.3 3 23 278 298 276 298 0.97

10 20 5.9e-06 0.00048 20.5 0.4 1 23 304 326 304 326 0.99

11 20 0.12 10 7.0 0.7 2 23 366 388 365 388 0.96

12 20 1.3e-05 0.0011 19.4 0.9 1 23 394 417 394 417 0.97

13 20 1.6 1.3e+02 3.4 0.2 2 23 423 444 422 445 0.92

14 20 3.1e-05 0.0026 18.3 0.5 1 23 451 473 451 473 0.98

15 20 0.0013 0.11 13.2 1.4 1 23 479 502 479 502 0.95

16 20 0.00011 0.0092 16.5 1.9 1 23 526 549 526 549 0.93

17 20 0.0024 0.2 12.3 0.1 1 23 560 582 560 582 0.95

18 20 0.0093 0.77 10.5 3.6 1 23 588 610 588 610 0.94

19 20 5.7e-07 4.7e-05 23.7 1.1 1 23 616 638 616 638 0.98

20 20 2e-05 0.0016 18.9 0.1 1 21 644 664 644 665 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.11	9.1	7.1	7.6	1	23	32	55	32	55	0.96
2	20	3.9e-06	0.00032	21.1	0.3	1	23	61	83	61	83	0.97
3	20	2.4e-05	0.0019	18.6	1.4	1	23	89	111	89	111	0.97
4	20	0.002	0.16	12.6	0.2	1	23	117	139	117	139	0.96
5	20	8.6e-07	7e-05	23.2	4.7	1	23	145	168	145	168	0.98
6	20	0.00096	0.079	13.6	0.8	1	23	188	211	188	211	0.94
7	20	0.012	0.97	10.2	0.6	3	23	222	242	220	242	0.95
8	20	4e-06	0.00033	21.1	0.4	2	23	249	270	248	270	0.98
9	20	4.8e-06	0.0004	20.8	1.3	3	23	278	298	276	298	0.97
10	20	5.9e-06	0.00048	20.5	0.4	1	23	304	326	304	326	0.99
11	20	0.12	10	7.0	0.7	2	23	366	388	365	388	0.96
12	20	1.3e-05	0.0011	19.4	0.9	1	23	394	417	394	417	0.97
13	20	1.6	1.3e+02	3.4	0.2	2	23	423	444	422	445	0.92
14	20	3.1e-05	0.0026	18.3	0.5	1	23	451	473	451	473	0.98
15	20	0.0013	0.11	13.2	1.4	1	23	479	502	479	502	0.95
16	20	0.00011	0.0092	16.5	1.9	1	23	526	549	526	549	0.93
17	20	0.0024	0.2	12.3	0.1	1	23	560	582	560	582	0.95
18	20	0.0093	0.77	10.5	3.6	1	23	588	610	588	610	0.94
19	20	5.7e-07	4.7e-05	23.7	1.1	1	23	616	638	616	638	0.98
20	20	2e-05	0.0016	18.9	0.1	1	21	644	664	644	665	0.96

Sequence Information

Coding Sequence: ATGGAATTTCAATCTCTTACGTCAATCTCGAGGAAAGAAATCACGAGTAATTTGCATCTATCAAGGTCGCGAAGAATAACCTCCCGGGCGGTTCACGAGTGCGTGAAGTGCGGCGCCTGTTTCTGCCACACGAGGAAGCTGGTTGAACACCTGAAGAATCTGCACGGCATCGACAGAGCGTTCAGCTGCGACGAATGCGGCAAGACCTTCCGAAGTCCCATGAACATTGCGCGGCACAAGCTGATTCACACCGGCTCGAAGAGATTCGCCTGCGACTTGTGCGACTACAGATCGAACCAGAAGTCGAATCTCGAGAGCCACCGTCGGCGGCACACCAAGGACTACTCGTTCAGATGCGAGCGCTGCGGGAAGGGCTTCGTCCTTAGAACCGAATACCTGGAGCACGTGAACGCCCACACGAGAAAGCAGCTCTATCGATGCGATCACTGCAACAAGTCCTATCCGTACAAAAAGAACCTGACTAACCACCTGAGAACGCAGCACGCTGGCGTTCTGCCGTCGGAAGCGAAGAAGGCAGACGGCGGGCAGACGGGACACAGGCACGCGTGCGCGATTTGCCTGGAAGGTTTCCCGCGGAAATCGTTTCTGGAGAGACACTTGAAACAACGACACGGACTGTCGAACGAAAGTGCGAGGCACCTGTGCGATCTGTGCGGGGCGGTGTTGTCGTCGAAGAGGCGACTGATGGTGCACAGGCGGGGCCACGCAAACGAGAAGATCGTCAAGTGCGATCTGTGCGACAAACAGTTCGCCAGCAGGGAGAACCTCAGCGTTCATCGGCGAGTGCACACCGGGGAGAAACCGTACGGTTGTTCGCAGTGCGGACGAAGATTCACGCAGAGAACGTCGTTGACGGTGCATCTTAGGTACCATTCCGGCGAGAGGCCGTATCAGTGCGTCGATTGCGGCAGGGGATTCGTTTCCGGCAGTTTCCTCAGGAAGCACCAAAAGATTCACGAGAGAGCCGCCCACTGGAGCAACGTTCGCGACGAGCTCAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGACGTTCTTCTCGATCCTGGACAAAAGTTCGAGGGAAACGAAAAGGTCTGCGACCTTTGTCAGGAGAAATTTCACTTCGTGACCAGATTGGTGGCACACCTGAGGATCGTTCACGGTATCCACAGGCCGTTCAAGTGCGTCACGTGCGGGAAGACGTATCCGCAGCAGTTCATGTTAAATGCGCACGTGAAAAAATCGCACACACCGAAAACGATGCCCTGCGGACAGTGCAGTTTCATGGGTGTGAACGCCATCGACGTGGAGAGGCACGCGAAACGACACCATCGAGACGACGTGAAGTTCACCTGCGAGATCTGCAGCGAGAACTTTGTGGACAAGGATTCCTTGATGACTCACACGACCATGCACAACTTTATGCAGTTTCATCAGTGCAACGCTTGCGGTACCACGTTCGACGACGTGTACAGCCTGAAGGAGCACAACCGTTTGTACCACTACGATCCGACGACGTTGATCCAAGGGAAGCTGGAGACGGAGGTGCCGCAGCAGGACACCGCGACGGAGCACAAATGCGACGTCTGTGGCAAGGCTTACAAGTACAAGTCGGTGTTGAAGCAGCACAAAGTGAAAGCCCACGGCGACGTGCCGAGCTACGAGAGGCGTCGGTATCTGTGCGCTCTCTGTGGCAAGGAGCTGAAAACCGCGAAAGGCCTGGAAATTCACAATCGGTCGCACACGGGTGAAAAACCGTACACCTGCGAGGTGTGCGGCAAGTGTTTCGCCTGCGAAACGCTGCTCAGGACTCATAACGTCACCCACACTGGCGAGAGGAAGTACTCCTGCGACCAGTGCGGCAAAGCTTTCACGCAGAGGTCCACGTTGGTCGTTCACAAGCGTTATCACACCGGCGAACGACCGTACGTTTGTCCCCGGTGTGGAAAAGGCTTCGTCACCAGGACTGTTCTGAACACTCATATGAAATCCTGTCGTTAA
Protein Sequence: MEFQSLTSISRKEITSNLHLSRSRRITSRAVHECVKCGACFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCDYRSNQKSNLESHRRRHTKDYSFRCERCGKGFVLRTEYLEHVNAHTRKQLYRCDHCNKSYPYKKNLTNHLRTQHAGVLPSEAKKADGGQTGHRHACAICLEGFPRKSFLERHLKQRHGLSNESARHLCDLCGAVLSSKRRLMVHRRGHANEKIVKCDLCDKQFASRENLSVHRRVHTGEKPYGCSQCGRRFTQRTSLTVHLRYHSGERPYQCVDCGRGFVSGSFLRKHQKIHERAAHWSNVRDELSSCEDFRIKNEDVLLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTMPCGQCSFMGVNAIDVERHAKRHHRDDVKFTCEICSENFVDKDSLMTHTTMHNFMQFHQCNACGTTFDDVYSLKEHNRLYHYDPTTLIQGKLETEVPQQDTATEHKCDVCGKAYKYKSVLKQHKVKAHGDVPSYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00983103;
80% Identity: -