Mbee009980.1
Basic Information
- Insect
- Melipona beecheii
- Gene Symbol
- gtf3a
- Assembly
- GCA_032399605.1
- Location
- JAUCMO010000463.1:9353627-9359814[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0047 0.39 11.4 0.3 1 23 61 83 61 83 0.94 2 27 1.1e-06 9.4e-05 22.8 1.6 2 23 90 111 90 111 0.97 3 27 1e-05 0.00084 19.8 6.0 1 23 145 167 145 167 0.95 4 27 0.00045 0.037 14.6 4.8 2 23 173 194 172 194 0.97 5 27 0.0017 0.14 12.8 0.1 1 23 199 221 199 221 0.98 6 27 2.4e-06 0.0002 21.8 0.9 1 23 229 251 229 251 0.98 7 27 0.16 13 6.6 2.0 1 23 257 280 257 280 0.94 8 27 0.00037 0.03 14.9 0.3 3 23 293 313 291 313 0.96 9 27 2.1e-06 0.00017 22.0 1.8 1 23 319 341 319 341 0.96 10 27 5.5e-08 4.5e-06 26.9 0.2 1 23 347 369 347 369 0.98 11 27 4.2e-07 3.5e-05 24.1 0.9 1 23 375 397 375 397 0.98 12 27 0.12 10 6.9 6.4 1 23 483 505 483 505 0.97 13 27 1.4e-06 0.00011 22.5 0.4 1 23 511 533 511 533 0.98 14 27 0.024 2 9.2 3.4 1 23 538 561 538 561 0.96 15 27 7.5e-05 0.0062 17.1 0.5 1 23 567 589 567 589 0.97 16 27 6.2e-05 0.0051 17.3 0.2 1 23 595 618 595 618 0.97 17 27 2.9e-05 0.0024 18.4 1.3 1 23 628 650 628 650 0.94 18 27 4.6e-05 0.0038 17.7 1.6 1 23 654 676 654 676 0.95 19 27 7.6e-06 0.00063 20.2 0.1 1 23 682 704 682 704 0.98 20 27 0.0004 0.033 14.8 0.6 3 23 907 928 906 928 0.94 21 27 0.0016 0.13 12.9 0.9 1 23 935 958 935 958 0.97 22 27 0.0011 0.091 13.4 2.2 1 23 965 988 965 988 0.95 23 27 1.2e-05 0.00099 19.6 0.5 1 23 1022 1045 1022 1045 0.97 24 27 0.00017 0.014 16.0 0.1 2 23 1084 1105 1083 1105 0.95 25 27 4.6e-06 0.00038 20.9 1.2 1 23 1109 1131 1109 1131 0.96 26 27 1.9e-05 0.0015 19.0 2.8 1 23 1137 1159 1137 1159 0.98 27 27 5.7e-06 0.00047 20.6 0.6 1 23 1165 1187 1165 1187 0.99
Sequence Information
- Coding Sequence
- ATGTTGACGAAGCTCGACTTGATGAAGAAGGACGCGGACTCGGAGAGCACGACGCCCGCGAAGTGCGCGGACCTGGCTGCGGCTGGCAACAACGCGACCATCCTGCCGATGATCCAGGAGCAAAACTTTATCAAGCAAGAAGTgaacgacgaggacgaggaagaGGATTTACCGTTGGCATACCACTGTAAACTGTGCGGTGTGTTTTTCGCTTCGCAGGCGCTGCTGGACAATCACGAGATCGAGCACAAGGGTAAACGTAAGAACACTTGCGCCCAGTGCGGCCGGGTGTTCAGAACGTACGTGAATCTGCGAAAGCACATGAAGAAGCACGCTGGTCGCAAAGGAGGGCGTAAAGCGAGCAGCGCGTCGACGGTGGCAAGCAGTCGTTCCGGTACCCTGAAGGTGAAGAAAGAGAAGCCGGAGCTGGAGTTCCTCTGTAAAACGTGCAACAAGGTGTTCCGGCACAAGAGCAACTACCAGAAACATCTGATGCGGCACACTGTCGGCGACTTGACTTGCAAACACTGCCCGAAGAAGTTCCGCCTGTTCCGTGATCTGACCAGGCACGAGAAGACTCACTTCTATCCCAGTTACATGTGCAAGGAGTGCGACTACGAGACAACCGTGTTGGCCGCGCTCAGCATTCACATGTTACGACACACGGACAAGGCGGATCTACCGTTCAAGTGCAACGACTGCGACAAGCGTTTCCGGAAGGCGATCGACCTGCAGGAGCACTACAACATCCACTCCGGGGACAAGCCTTTCGTTTGCCAGTTATGCGGCAGTGCTTTCTACCTGAGACGGCAGCTCTCCGCTCACTGCAGACGCATGCATCCTGAAATGAAGGCCAACAAAGTGACAAGCACGGCCTGCGACATTTGTGGCCGAGTGTTGGCTACCAAGAGGTCCCTGTTCCGTCACAAGGAGAGCCACAATCCCACGAAGCTCTATCTGTGCGATTACTGCGGCAAGAGTCTCAGCAGCGCGGAACATTTGAAGAAACACAGACGGATCCACACCGGGGAGAAACCGTACGTCTGCGACATCTGTGGCAAGGGTTTCACCGATTCTGAGAACCTGAGGATGCACAGGAGAGTGCACACCGGTGAGAAACCGTACAAGTGCGACCAGTGTCCGAAAGCTTTCTCGCAGAGGTCCACGCTGACTATACACAGGCGAGGTCACACGGGAGAACGGCCAGCTCTCGGGGTCGTAGATTGGAACGCGAAATCCAAAGAGCGCGGTGAACAGGCCGTCAAGATCTTCGATTCACGATCAAAGTCTCCGTCGTCAGAACCACCGGTAGAACAAGAGAGACCCTTGTCTAACAGAAAAGATCAGATCTTAAAGAAAGCCAACTGTTCTGCGAATTTCGACAGCGATTCGCCGACGAGTTCAACCGGAAGGAGGAAAAGGAACGACAAACAAGGGCAAGAACGACACGTCTGCTCCATTTGCAAGTTGCACTTCGACAGACGAGGGGATCACAAGCGCCACATGATCAAACACAGCGATCTTCGCCCGTACAAATGCGAGATCTGCGACAAGGCGTTCAAACGTTCCTCGGAGATGTCCAACCACGCGCAGATCCACCGTGGCATCGAGCACGCGTGCGAAACGTGCGGTTTCACCACGATCAACAAACTCTCCCTGAGGATGCACCATCGTCGAGTTCATCAGCGTGACTTTCGTTACCGTTGCGACCAGTGCGACAAGGGTTTCATGTCCAATTACGAACTGGAGGATCACAAGGCTAGCCATCTGGACGGGAAGACGTTCGTCTGCGAGTTTTGTGGCAACGCCTACTCGCAGAAGTCCTATCTGGTGGCGCACAAACGCGTGATCCACGGGATCCAGAGGAGCGCGCCGAAGGAGTTCCAGTGCGACGTATGCAGGAAGAGCTTTGCCACCGAGCACAATCTTCGCACTCACGTTGGCCTGCACTCGCAGACGTTCCTGTGCGCCCAGTGCGGCAAGAAGTTCGCGACCAACCACGCTTTGAAGCTTCACGCGCGGAGGCACACGGGCGAGAGACCGTACGAGTGCGCGATCTGCTCCAAGGCTTTCGCCAGATCGGCGGCGCTCAGGATACACCGACTGACACACACGGGCGAGAGACCGAGGTCTACGATCGCAGAAACGTCACTCGGCCTGGGTAAAAATGATCGAGCGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCGAACGACAGACGACTCGATGCCCTGGAAAATTGAGATAAAACGGGAGCAGGATGACGAGAGGATGACGGCTAGAAACGACAATAATTCCTCATTAGGAGAAGTAGATGTGGTGAAGACTGTTTTGGTACCTGTTAGAGACTCAGTGACGAAGGAAATCAGAAATGTTTTGGTGCCCGTTGAAGAGATGGACGATACCGGATTAAACGTCATCAAAAGTGTACTGATTCCTTTGCAGGAGGAGGATGGATCGATTTCTtacgaaattaagaaattcgtAGTGCCTATCAATCCGGAATTGAGCTTGCCACCGAAGAAAAAGCCCGAAGCTAAGTTATCGACGAGTAAAGCGAAAGGTATGCAGGtgaattgtaagaaaaaagaggagaaaggaacGGTATCGTTTGGTACCTTTGAAGAAGCTagacaacaaaaaaaaaaagaagagaagcaAAAGGAGGCgaaggaaatagaaaaagtagATCAGATGTTGGAAACCTTGAGAGGCATTTGTCCATTCTGTCAGAAGCGTTTCAAAAACGAAGACCAAATGCAGGAGCACATTGTGAAAACACACAAGAAACCCTACAAGTTTTATCAGTGTTCCACTTGCCAGTTGCAGTACAAGTCGTCGGCGGGGTTGAAGTATCATCAGATCCGCGAGCACAGCGACATAGACCCGATGTTCACGTGCGACTACTGTGGGAAGCGGTTTAAACTGAAGCTGGACTTGGGCCTTCACATCGACAGATGTCACGTGAACGTCACTCACATTTGCAGATTTTGCGGCATGGTCGTGAAGAATATCGCGTATCACGAGTTGAAACACGAGAAACATAAGAAAGCCAGTTTCCTCTATCGTTGCAGCATCTGCcctaaaaaattcaaagcgtGGAACAGTTTGGAGAATCATTTGCTAATGAAACACAAATCGTCCGGCGTGGGATCGCTCGATATGTTGAGGACGCTCtacgagaaaaaattttggTCGAGAAGTGACTTTCACCAGCCGGTGTTCAGTCAGTCGGTAGCCAAGCAAAATAAATGCGGCGTGTGCGGCGAAACCTTCGCCTTTGAGTACAATCTTCGCAATCACGTGGCCTTGCACTCGCAGACGTACTTGTGCGCCCAGTGCGGCAAGAATTTCACCACGAGTTATTTGTTGACGCTGCATCTTCGGAAACACAGCGGCGAACGGCCGTATCAGTGCAAAACGTGTCTGAAGACGTTCACCAGATCATACTCGCTTAGGATACACAAGCTGATTCACACCGGAGAGAGGCCATACGTGTGTGATCTGTGTGGTCAAAGTTTCACTCAGAGAGGGAGCATGATGATACATCGTCGCAAGCATCCCGGAAATCACCCGCCGCCACCTCCTCTGTTACTCAGTAGACTCGAGAATAACGAGCATTAA
- Protein Sequence
- MLTKLDLMKKDADSESTTPAKCADLAAAGNNATILPMIQEQNFIKQEVNDEDEEEDLPLAYHCKLCGVFFASQALLDNHEIEHKGKRKNTCAQCGRVFRTYVNLRKHMKKHAGRKGGRKASSASTVASSRSGTLKVKKEKPELEFLCKTCNKVFRHKSNYQKHLMRHTVGDLTCKHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVLAALSIHMLRHTDKADLPFKCNDCDKRFRKAIDLQEHYNIHSGDKPFVCQLCGSAFYLRRQLSAHCRRMHPEMKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPALGVVDWNAKSKERGEQAVKIFDSRSKSPSSEPPVEQERPLSNRKDQILKKANCSANFDSDSPTSSTGRRKRNDKQGQERHVCSICKLHFDRRGDHKRHMIKHSDLRPYKCEICDKAFKRSSEMSNHAQIHRGIEHACETCGFTTINKLSLRMHHRRVHQRDFRYRCDQCDKGFMSNYELEDHKASHLDGKTFVCEFCGNAYSQKSYLVAHKRVIHGIQRSAPKEFQCDVCRKSFATEHNLRTHVGLHSQTFLCAQCGKKFATNHALKLHARRHTGERPYECAICSKAFARSAALRIHRLTHTGERPRSTIAETSLGLGKNDRAQFQVTVPASSRTTDDSMPWKIEIKREQDDERMTARNDNNSSLGEVDVVKTVLVPVRDSVTKEIRNVLVPVEEMDDTGLNVIKSVLIPLQEEDGSISYEIKKFVVPINPELSLPPKKKPEAKLSTSKAKGMQVNCKKKEEKGTVSFGTFEEARQQKKKEEKQKEAKEIEKVDQMLETLRGICPFCQKRFKNEDQMQEHIVKTHKKPYKFYQCSTCQLQYKSSAGLKYHQIREHSDIDPMFTCDYCGKRFKLKLDLGLHIDRCHVNVTHICRFCGMVVKNIAYHELKHEKHKKASFLYRCSICPKKFKAWNSLENHLLMKHKSSGVGSLDMLRTLYEKKFWSRSDFHQPVFSQSVAKQNKCGVCGETFAFEYNLRNHVALHSQTYLCAQCGKNFTTSYLLTLHLRKHSGERPYQCKTCLKTFTRSYSLRIHKLIHTGERPYVCDLCGQSFTQRGSMMIHRRKHPGNHPPPPPLLLSRLENNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -