Mpro038128.1
Basic Information
- Insect
- Melinopterus prodromus
- Gene Symbol
- -
- Assembly
- GCA_964023965.1
- Location
- OZ030395.1:15205362-15206474[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00076 0.076 15.1 5.4 1 23 83 105 83 105 0.98 2 10 9.4e-06 0.00094 21.1 3.7 1 23 111 133 111 133 0.98 3 10 0.00093 0.094 14.8 4.0 1 23 139 161 139 161 0.99 4 10 0.037 3.7 9.8 9.0 1 23 171 193 171 193 0.98 5 10 5.2e-05 0.0052 18.8 0.3 1 23 199 221 199 221 0.99 6 10 0.00064 0.064 15.4 4.5 1 23 227 249 227 249 0.99 7 10 8.6e-05 0.0087 18.1 3.7 1 23 255 277 255 277 0.98 8 10 0.00012 0.012 17.6 4.6 1 23 283 305 283 305 0.97 9 10 0.0022 0.22 13.7 2.4 1 23 313 335 313 335 0.97 10 10 0.00022 0.022 16.8 2.3 1 23 343 365 343 365 0.99
Sequence Information
- Coding Sequence
- ATGAATTCATCAGATCTACAAGAATCAAACACTTCATCTTGTGAGGAATGGCTTACGCAAATAAAAACGGAACCAGAAGATCCAACCGATGAAATAGACATTGAATACAACAATATCAGCGACGTTAGTAACATAAAATCCGATGAATTGGATGAAACCGAACCAAAAATAGAATTTGAAGAGATAATCGTTAAGTCGGAATCAATTAATCATTCCGATGATTCAGTTCAAAAGCTACAAGAACGACACCGCTGCAATCTGTGCGATTGCGTTTGTAATAGCTTACCCAACCTTAGACGTCACATAAAAATCCATACAGGAATCAAACAACATAAATGCAGCGAGTGTGATTATACTACGAATCGACCGTTTAACCTCAAAAAACACATGATGAACCACACGGGAGAGAGAGCCTTTAAGTGTGAGACTTGTACGTTTGCTACGAAGTCCGCATGCGACCTTAAACGACATATAAAAAGGCATACAGGCGACAAATCGGGAGAAATATCTCATAAATGTAACATCTGCGACTTTTCCACGATACATTTATGCACGTTTACGAAACACATGCAAAAACATGCAGGTGTGAAACCTTATACGTGTAGTATGTGTCCGTATGCTTCCGTTCAAGCGTCAGATGTCAAACGGCACATGCAAAAACACACGGGCGTCAAACCGTATCAGTGCACTATGTGTGAATATACTTCTGGGCAATCTGTGCATCTTAAACATCACATGTTAAAGCATACAGGGCAAAAACCTCATACGTGTAACGTATGTGACTTTGCCACTATACATTTGAGCAATCTTCGTAAACATATGCTGAAGCATGGAGACGAGAAACCCCATAAGTGCTCGGAGTGTTCTTATTCTTGTATACGACCGACTGATCTTAAAAAACACATGCTGAATCATGGGGGCAAAGATATGAAACCGTATGCATGTAGTATATGTTCGTTTAGTTGTGCTACGACGGGGAAATTTAAACGGCATATGGGGACTCATGGCGAGACGTACAGGACGATGTTTAAATGTGATCGTTGTGAATATAGTAGTGCGAAGAGTACTAATGTTAAAAGACATATGAAAACACATGAGGGAAAGCGGGGGTAG
- Protein Sequence
- MNSSDLQESNTSSCEEWLTQIKTEPEDPTDEIDIEYNNISDVSNIKSDELDETEPKIEFEEIIVKSESINHSDDSVQKLQERHRCNLCDCVCNSLPNLRRHIKIHTGIKQHKCSECDYTTNRPFNLKKHMMNHTGERAFKCETCTFATKSACDLKRHIKRHTGDKSGEISHKCNICDFSTIHLCTFTKHMQKHAGVKPYTCSMCPYASVQASDVKRHMQKHTGVKPYQCTMCEYTSGQSVHLKHHMLKHTGQKPHTCNVCDFATIHLSNLRKHMLKHGDEKPHKCSECSYSCIRPTDLKKHMLNHGGKDMKPYACSICSFSCATTGKFKRHMGTHGETYRTMFKCDRCEYSSAKSTNVKRHMKTHEGKRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00138421; iTF_00138436;
- 90% Identity
- -
- 80% Identity
- -