Mpro048008.1
Basic Information
- Insect
- Melinopterus prodromus
- Gene Symbol
- wdn
- Assembly
- GCA_964023965.1
- Location
- OZ030397.1:12937381-12949064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.019 1.9 10.7 0.3 2 21 194 213 193 214 0.92 2 10 4.8 4.8e+02 3.2 5.8 1 19 222 240 222 244 0.91 3 10 9e-05 0.0091 18.0 1.7 1 23 250 273 250 273 0.96 4 10 2e-05 0.002 20.1 0.6 1 23 279 301 279 301 0.98 5 10 0.00015 0.015 17.4 0.2 1 23 309 331 309 331 0.98 6 10 4.5e-06 0.00045 22.1 2.3 1 23 337 359 337 359 0.97 7 10 0.00014 0.014 17.5 4.4 1 23 365 387 365 387 0.93 8 10 0.00036 0.036 16.2 3.1 1 23 393 415 393 415 0.97 9 10 0.0025 0.25 13.5 2.4 1 23 421 443 421 443 0.98 10 10 5.9e-05 0.0059 18.6 1.5 1 23 449 472 449 472 0.97
Sequence Information
- Coding Sequence
- ATGAGGCACCGTGAGATGTCCCAGTCAAACGATCAACCCGAAATTGGATTCGGAATAAAAGAAGAAGATATCGATGAGCTAGCCCAAAATGTAGATCTCAAAGTGGAAATTCCCGACAATATTTTTGACGAATGCGAATCCCTAAAGGAGGAATTTATTAACTCGAACGTTGAATATGCATTGGATAATGTTCTTGACTTTGATATCAATGCGGATAGAGAGCTACCCGAGCTTTTTGAGCTCTCGCAGAGGTTACAGAAGGccaagaagaaaaacaaaagaaaatcgcATCCGCCTCAGAAGGCCAAACAAAGGGAGGATTTCAAGGAACCAACCGATGGGCATTCGAGAAATGAAAATGACGAATTGTTCAGCGTGGGGTACAACGGGGACCAACTATCTGACTCCATGTTAAATTCAGAACTGTTCAATTCCAATTCCGGTTTACCCGAGGGTGATgatatatttaaccatattgACGAGCACAGTATTTTCCAAGAAATCCAGGAGGAGAAAGaTGACGTTGGTGACCAAATGGTCGATAACGTAAAAGAAGAGTTCCGCAACCACTGTGGCATCAAATGCAATATGTGCGAGAAGGTCTTCCCATTCAAAGTCGACTTTGACACCCACTACACAACATGCTACAACATGACTCCCGTGTATACATGCGCCTTCTGCAACAAAACCGTCGAAAAATATTCAACTTTCCGGTCTCATTGCTATCGGCACGTCACTGAAGGAAGATATAAATGTTCTTCTTGTCCAAAGGCATTTTGCTTGCAGAGTTTACTCCAGGTCCACATGGTCAGCAAGCATAGCAAGACGAAACCGTTTTCTTGTGACGAGTGCGACAAGAGCTTCCTAACTCAGGCTGGACTGAAGATGCACATCCGGAAGCATAAAAGTGAGGTCAAGGAGGATTATCCCTGCGTGATGTGTGGGAAAGTGTTGCATACTAGAGGGGGTTTGACGTCACATATGAACGTACATAGGCTAGGCAGGCGGTTCATGTGTGATGTTTGTGGAAAGACCTTCACGCAGAAGGTCAACATGCAGCAACATGCTAGACATCATACTGGAGATAAGCCCCATAAGTGTGAGCAGTGCggaaaaatGTTTGCTGAAAAGTCCCACTTGGCGCGCCACTTCAGCTTCCACAGCGACCAACGGCCCTTCAAGTGCGAGATCTGCAATAAAATGTACAAGACTGAACGCTGCCTAAAGGTGCACAGCATGGTCCACGCAGAGGAACGTCCCTTCGTCTGCACCTACTGCAACAAAGGCTTCCTAAGCAGCACAAAACTGAAACAACATTCCAATACGCACACTGGCGAACGACCCTACGCCTGCAAGTACTGCGAACGTACCTTTACGAATTACCCGAACTGGTTAAAACACGTTCGACGAAGGCACAAAGTTGACCATAAGACTGGTGAGAATCTCGAGCCTAAAAAGGAGGAATCGCAGAAGACTGTTTCTTCGAATAATTCTGTGGAGGTTGTGGAACCTCCACAAGTTTCTAGTTCTGTGGCCCCAAGTGCCATGGTGGCCGCGCCTGCTTTGGTATCATCAAGTCTTTCGGTGGTTCCGCCTCCTCCTACGTTGGAAGATTTACCGTCTATGGTTGCAACGGCGGATATTTCGACTGAACTTAGCTCAGATCTGATGCTGACCAGAACCGAGGAGTTTTTGTTGCAGCAGTCGCTGCTGCAGTATCCAATTATCGACGATAAATACTTGTATCATCCTCAGGTTGATGTCTACAATGgaAACTTTATAGTAAACTCATCCTCTCCGATGGGAGTCACAATGGTCCCGTACTTCCAGACCAGCCTACAAAGCCCACCGAACACAACGAATGGCATACCTCCACTTTCGCTCCACATGAACGACATCGTCACACAGGTTCTGCAACAACAACAACTTGCTTCCGACGGTATCAATTAA
- Protein Sequence
- MRHREMSQSNDQPEIGFGIKEEDIDELAQNVDLKVEIPDNIFDECESLKEEFINSNVEYALDNVLDFDINADRELPELFELSQRLQKAKKKNKRKSHPPQKAKQREDFKEPTDGHSRNENDELFSVGYNGDQLSDSMLNSELFNSNSGLPEGDDIFNHIDEHSIFQEIQEEKDDVGDQMVDNVKEEFRNHCGIKCNMCEKVFPFKVDFDTHYTTCYNMTPVYTCAFCNKTVEKYSTFRSHCYRHVTEGRYKCSSCPKAFCLQSLLQVHMVSKHSKTKPFSCDECDKSFLTQAGLKMHIRKHKSEVKEDYPCVMCGKVLHTRGGLTSHMNVHRLGRRFMCDVCGKTFTQKVNMQQHARHHTGDKPHKCEQCGKMFAEKSHLARHFSFHSDQRPFKCEICNKMYKTERCLKVHSMVHAEERPFVCTYCNKGFLSSTKLKQHSNTHTGERPYACKYCERTFTNYPNWLKHVRRRHKVDHKTGENLEPKKEESQKTVSSNNSVEVVEPPQVSSSVAPSAMVAAPALVSSSLSVVPPPPTLEDLPSMVATADISTELSSDLMLTRTEEFLLQQSLLQYPIIDDKYLYHPQVDVYNGNFIVNSSSPMGVTMVPYFQTSLQSPPNTTNGIPPLSLHMNDIVTQVLQQQQLASDGIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -