Basic Information

Insect: Melinopterus prodromus
Gene Symbol: Prdm9
Assembly: GCA_964023965.1
Location: OZ030390.1:14329827-14352530[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.41 41 6.5 2.5 1 21 280 300 280 304 0.90

2 13 2.4 2.4e+02 4.1 0.2 1 18 364 381 364 381 0.94

3 13 6.5e-07 6.5e-05 24.8 0.9 1 23 392 414 392 414 0.98

4 13 1.3e-06 0.00013 23.8 3.7 1 23 420 442 420 442 0.98

5 13 9.3e-06 0.00093 21.1 2.9 1 23 448 471 448 471 0.98

6 13 1.4 1.4e+02 4.9 1.9 1 21 770 790 770 794 0.89

7 13 0.0019 0.19 13.9 1.2 1 23 854 876 854 876 0.99

8 13 2e-07 2e-05 26.4 1.2 1 23 882 904 882 904 0.99

9 13 2.3e-07 2.3e-05 26.2 2.9 1 23 910 932 910 932 0.98

10 13 3.3e-05 0.0033 19.4 4.5 1 23 938 961 938 961 0.98

11 13 0.011 1.1 11.5 4.3 1 23 968 990 968 990 0.97

12 13 0.00014 0.014 17.4 2.7 1 23 996 1018 996 1018 0.99

13 13 0.00033 0.033 16.3 0.7 1 23 1024 1047 1024 1047 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.41	41	6.5	2.5	1	21	280	300	280	304	0.90
2	13	2.4	2.4e+02	4.1	0.2	1	18	364	381	364	381	0.94
3	13	6.5e-07	6.5e-05	24.8	0.9	1	23	392	414	392	414	0.98
4	13	1.3e-06	0.00013	23.8	3.7	1	23	420	442	420	442	0.98
5	13	9.3e-06	0.00093	21.1	2.9	1	23	448	471	448	471	0.98
6	13	1.4	1.4e+02	4.9	1.9	1	21	770	790	770	794	0.89
7	13	0.0019	0.19	13.9	1.2	1	23	854	876	854	876	0.99
8	13	2e-07	2e-05	26.4	1.2	1	23	882	904	882	904	0.99
9	13	2.3e-07	2.3e-05	26.2	2.9	1	23	910	932	910	932	0.98
10	13	3.3e-05	0.0033	19.4	4.5	1	23	938	961	938	961	0.98
11	13	0.011	1.1	11.5	4.3	1	23	968	990	968	990	0.97
12	13	0.00014	0.014	17.4	2.7	1	23	996	1018	996	1018	0.99
13	13	0.00033	0.033	16.3	0.7	1	23	1024	1047	1024	1047	0.98

Sequence Information

Coding Sequence: ATGCGTTTCCTGTGTTTTCAGAAATCGCTGCATTTCGATGCCCTATTTTCCGTCGATTTTTTCGTTGGACTTAAGATCTGCGAAAAACAGTTTCGGTTGCTGTGGCCTGTGCTAGAGGTGCTTCGTGACGTAAAACATGGTATATCCGTCACTGCCCCCGAATTTATGTTACCTCCTAAGAATGTAGCAGCAGATAAACCGCAAAAACGTGCGAAAAAGGCTAGAACGCAGCCCAACAAACCTCTTTTAGAACGCCCAAAACGAAATCTGGAGAAGGTAAATTATAAGGAATCCGAAACGATTATGGATGGTTTCATTTATTGCGATAATTGCGAAATTGAGTATGAAAACTTCTGTCCAAGATGCGGTATGTTGACGCACGTGCGAGACACCAACGTAAAGATTGGTGTGAAAAACCGATCGCGAAAAACTCTACCTGACGGTGTGTTAGAAATCAAATCATCGACTATCCACGGAGAAGGCGTTTTCTCGTTGAAAACTTTACCGAAAGGTTTGAAGTTCGGACCTTATGAAGGGATACAATCGGTGAATAGCACCACGGGATACGCTTGGCGTCTGAGAGGTGGGAAATTGATAGATGCAGAGGATCAAACCAAATCGAACTGGATGAGGTTCATAAACTGCGCTAGGAATGTAAATGAGCAGAATATGATGGCCTTCCAGTATTTGGGGAAGATGTATTACAGGACAGTGAGGAGGATTGAAAGTGGAGAGGAGTTGTTGGTGTATTATGGAGATAATTATGCGAAGATTTTGGGCATTGATCCGCATAGTTATTTTGAACCTGAGATTGGGGAGGTTGAAGATGATAACGAGTTTGTTTGCGATCCTTGTGGGTTTGTGTTTAGTGAAAAGAAGTATTTGATTAGTCATAATAGGTTTTGCCGGCATGTTCAGAAGAAAATGATGGATTTACATAAGAATATAAatacgttTACGTGTAGATATTGCAAGGTAGAAATTACCGACGAAAAACTATTTGGTGGACATGTGAAATTATGTAAATGGAAATCATTACGaactgATAGCAGCACGACTGTAGATGAGGAGTGCCACATCAAGAAGAAGTATAAATGCGCAACATGCCAATATCAAACTGATGATAAAGGTCATTTAATAAGGGATACAAGAATACACACAGGCGGACAACCATTTAAATGCGACGAATGCGGAAAAGGGTTTAATCGGAAAGACAGTCTTCAAATTCATAAGAAAATCCACACCGGCGAAAAGAACTTTAAATGCAATTATTGCGAAAAATCGTTCAATGTCAATAGTCATTTACAAACACATATTCGCTTGCATTCGTCTGTTAGGGCATTCAAATGTTCCGATTGTGATATGAGTTTTAATCAAAAAGAACAATTGAAATATCATCGAATGACAAAACATGAATGCGGAAAGAAGGCACACGAATGCGACCAATGCAAATACACTACGGTTCTATTAAATATGGAGTTAACTGCCGAGCGAGTTGCCGAAATCGTAATTAGTTATGTGGGGCAAAATACATGGAACGAAATGTCGGAACTTGAGCGTATGAGATGCTCAAATCTTTATTGCTCATATAAAGAGTGTACAGACATAGGTATATCCGTCACTGCCCCCGAATTTATGTTAGCTCCTAAGGATGTAGCAGCAGATAAGCCGCAAAAAACTGTGAAAAAGGCTAGAACACAGCCCAACAAACCACTTTTAGAACGCCCAAAACGAAATCTGCAGAAGGTAAATTATAAGGAATCCGAAACGATTATGGATGGTTTTATTTATTGCGATAATTGCGAAATTGAGTATGAAAACTTCTGTCCAAGATGCGGTATGTTGACGCACGTGCGAGACACCAACGTAAAGATTGGTGTGAAAAACCGATCGCGAAAAACTCTGCCTGACGGTGTGTTAGAAATTAAATCATCGACTATCCACGGAGAAGGTGTTTTCTCGTTGAAAACTTTACCGAAAGGTTTGAAGTTCGGACCTTATGAAGGAATACAATCGGTGAATAGCACCACGGGATACGCATGGCGTCTGAGAGGTGGGAAATTGATAGATGCAGAGGATCAAACCAAATCGAACTGGATGAGGTTCATAAACTGCGCTAGGAATGTAAATGAGCAGAATATGATGGCCTTCCAGTATTTGGGGAAGATGTATTACAGGACGGTGAGGAGGATTGAAAGTGGAGAGGAGTTGTTGGTGTATTATGGAGATAATTATGCGAAGATTTTGGGCATTGATCCGCATAGTTATTTTGAACCTGAGATTGGGGAGGTTGAAGATGAGAACGAGTTTGTTTGCGATCCTTGTGGGTTTGTGTTTAGTGAAAAGAAGTATTTGATCGGTCATAATAGGTTTTGCCGGCATGTTCAGAAGAAAATGATGGATTTACATAAGAATATAAatacgttTACGTGTAGATATTGCAAGGTAGAAATTACCGACGAAAAACTATTTGGTGGACATGTGAAATTATGTAAATGGAAATCATTACGaaccgATCAAAGCAATACTGTAGATGAGGAGTGCGACATCAGAAAGAAGTATAAATGCGCAACATGCCAATATCAAACTGATGATAAAACCAGTTTAATAAGGCATACAAGAATACACACAGGCGAACAACCATTTAAATGCGACGAATGCGGAAAAGGTTTTAAACAGAAAAACGATCTTGAAAGACATAAGAGAATTCACACCGGCGAAAAGAACTTTAAATGCAATTATTGCGAAAAATCGTTCAATCGAAATACTAATTTACAAACACATATTCGCTTGCATTCGTCTGTTAGGGCATTCAAATGTTCCGATTGTGATATGAGTTTTAATCGAAACGTACATTTGAAATATCATCGAATGACAAAACATGAATGCGGAAAGAAGGCACACGAATGCGACCAATGCAAATACAGTACGGTTCTATTAAGTCATCTTAATCGACACAAAAGGATTCACGATAAGaaaaaaccgtttaaatgcgCGCAATGCGATTATGAATGTAAACGAGCGGCAACCTTAAAAACACACATAAGAAGACACACGGGCGATAAACCATTCAAATGCAAGATGTGCGAATATGCCGCAGTAACATCTAGTGATCTTCAAAGTCATATAAAAAggaaacattaa
Protein Sequence: MRFLCFQKSLHFDALFSVDFFVGLKICEKQFRLLWPVLEVLRDVKHGISVTAPEFMLPPKNVAADKPQKRAKKARTQPNKPLLERPKRNLEKVNYKESETIMDGFIYCDNCEIEYENFCPRCGMLTHVRDTNVKIGVKNRSRKTLPDGVLEIKSSTIHGEGVFSLKTLPKGLKFGPYEGIQSVNSTTGYAWRLRGGKLIDAEDQTKSNWMRFINCARNVNEQNMMAFQYLGKMYYRTVRRIESGEELLVYYGDNYAKILGIDPHSYFEPEIGEVEDDNEFVCDPCGFVFSEKKYLISHNRFCRHVQKKMMDLHKNINTFTCRYCKVEITDEKLFGGHVKLCKWKSLRTDSSTTVDEECHIKKKYKCATCQYQTDDKGHLIRDTRIHTGGQPFKCDECGKGFNRKDSLQIHKKIHTGEKNFKCNYCEKSFNVNSHLQTHIRLHSSVRAFKCSDCDMSFNQKEQLKYHRMTKHECGKKAHECDQCKYTTVLLNMELTAERVAEIVISYVGQNTWNEMSELERMRCSNLYCSYKECTDIGISVTAPEFMLAPKDVAADKPQKTVKKARTQPNKPLLERPKRNLQKVNYKESETIMDGFIYCDNCEIEYENFCPRCGMLTHVRDTNVKIGVKNRSRKTLPDGVLEIKSSTIHGEGVFSLKTLPKGLKFGPYEGIQSVNSTTGYAWRLRGGKLIDAEDQTKSNWMRFINCARNVNEQNMMAFQYLGKMYYRTVRRIESGEELLVYYGDNYAKILGIDPHSYFEPEIGEVEDENEFVCDPCGFVFSEKKYLIGHNRFCRHVQKKMMDLHKNINTFTCRYCKVEITDEKLFGGHVKLCKWKSLRTDQSNTVDEECDIRKKYKCATCQYQTDDKTSLIRHTRIHTGEQPFKCDECGKGFKQKNDLERHKRIHTGEKNFKCNYCEKSFNRNTNLQTHIRLHSSVRAFKCSDCDMSFNRNVHLKYHRMTKHECGKKAHECDQCKYSTVLLSHLNRHKRIHDKKKPFKCAQCDYECKRAATLKTHIRRHTGDKPFKCKMCEYAAVTSSDLQSHIKRKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -