Mpro006573.2
Basic Information
- Insect
- Melinopterus prodromus
- Gene Symbol
- -
- Assembly
- GCA_964023965.1
- Location
- OZ030390.1:39289641-39316338[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0069 0.69 12.1 2.2 2 21 253 272 252 273 0.93 2 13 0.001 0.1 14.7 2.9 3 23 282 303 280 303 0.94 3 13 0.57 57 6.1 0.3 1 14 310 323 310 325 0.90 4 13 0.088 8.8 8.6 1.7 3 20 335 352 333 354 0.87 5 13 7.2e-05 0.0072 18.4 0.1 2 23 362 384 361 384 0.95 6 13 0.0025 0.25 13.5 0.3 1 23 391 413 391 413 0.97 7 13 0.58 59 6.0 4.8 1 23 419 442 419 442 0.94 8 13 1.9e-05 0.0019 20.2 0.9 1 23 447 469 447 469 0.97 9 13 6.4e-05 0.0064 18.5 0.3 1 23 478 500 478 500 0.98 10 13 7.2e-06 0.00072 21.5 0.6 1 23 505 527 505 527 0.98 11 13 0.00091 0.091 14.9 0.3 1 23 533 555 533 555 0.97 12 13 2.7e-05 0.0027 19.7 0.2 1 23 561 583 561 583 0.97 13 13 2.5e-05 0.0025 19.8 1.8 1 23 589 611 589 611 0.98
Sequence Information
- Coding Sequence
- ATGGTTAGCATAATGGAAATTATGCAGTTGTGTCGATTGTGTTTAGTTAAGGAACAAGTGAACATACCCATTTTTGACCAACAGGGCGATATTAAGGaagtttttttgaaaataagcgCCTGTTTGCCGGTCAAGgTTTCAAAAGAGGACAaactaccaaaaaagatttGCGACGGTTGCTCATATAAACTAGACTTATTGTATCAATTCTCAAACACCTGTGCCAATGCCGAGAAACAACTATTGACTTGGCTAACTCAATTGAACTCTGACACAATGAAGGAAGATGCTGATACCGCACATCAAACACAGACCTCCCAGCCACATCCTGTTAAACAAGAAATGCTTGATATAGCAGATAATGGAAATGACACCGCTGACTCCGAGTATCTCCACCAGCAGCAGCTTGAAGGAAGTGACCTTGCagcgatagaatctcatGATGAAAATGGAGGAGGAGATGATGATGGTGGCGGTGATGATGATAGTTCAGATGATGAACCTTTGGCAAAACGTAGAAAGCGACTAATTAAAAGCCACACCGATACTGGACCCTCGTCTGGTCTACATTCTGTGGCGCACATGGCTGTGACTAAGACTGAAGATGCAAGTGACAGTGATGGTGATGATAACGCTGATGATCCTGAACCGAGTTTTGTATCGGTTGGAACAGATGATGGCCAACAACCAGGTCCATCTGGTTTGGGAAAAGCTTCAACGGACATACCGATGGAAGACGCTGAACTCGAAAATAAGACATGCATGAAGTGTAGCAAAACTTACTCGACTAGAAGAGCATTTACCCGACATAGACTGCGGTGCAACAAGGAAAAAACAATTGCCTGTGAGATGTGCCATAAGAAATTTAAATCCAAGCACGAGATGAGTCAGCACGTGCGAGCTATCCACAGCGAGTACAAAGCCGTATTTACCTGTGAAATATGTGACGCATTCTTTTACACGAAAGCTACGATTTATGGCGAGAAATCTTCACAACATTTCTGTATTAAATGCAGGAAAGCATTTCCCAGCAAGTCTAAATTGGTGAAACATACGACACGGTGTGCAAAGGAGAGAACGGTTCCATGCGATTTATGCGGGAAAATGTTCAAGACGCAATTCGAAGTGAGACAGCACATTGAAGTGGTACATACGTTTCCCAAAGATCTCTACACTTGCGAATCTTGCGATGCCAAATTCGGCTCCAAGGCTGCTTTTACCAGACACGAAGCTAAGCACTTGAATGAATACAGATTTCACTGCAATCAATGTGAAAAGAAATATCACATTAAGCAAAGCCTGGTGCACCATATAGCTCTTGAACATAGAGGAATTCGTTACGCCTGTGAAGTATGTGGAAAATCCTTTAGTTCTGAGCACTACTATCAGACTCACGCAGCAACGCACAAGGATGATTATGTGCCGCCGCAATACAAATGCGGAGAATGTGGCAAAATGTACGGAAGCAGAAGTGGCTTATCCTTGCATAAAATTACCCACAAGAAACCTTTTTATGTCTGTGATATATGTGGCAAGAACCTTACCACATACAAAAGCTTAAAACAGCATATGATGTTGCATACGGGAGAAAAGCCATTTGCGTGCGAAATGTGCGGAAATAGATTTAATAAACAAGCCATTTTAAATTCACATATAAGAACACACACCAAGGCAAAACCGTTTATATGCGCTCAATGCGGCAAAGGGTTTTCACAGAGGACACCCCTAGTCATACATATGCGGCAACATTCAGGCGAGAAACCGTACGCTTGCCAAATTTGCGATAGAAAGTTTATTACTAAAACGCTGTTGAAGACTCATTCAAAGACACACGGTATTGCGTTGGCATATATTTAA
- Protein Sequence
- MVSIMEIMQLCRLCLVKEQVNIPIFDQQGDIKEVFLKISACLPVKVSKEDKLPKKICDGCSYKLDLLYQFSNTCANAEKQLLTWLTQLNSDTMKEDADTAHQTQTSQPHPVKQEMLDIADNGNDTADSEYLHQQQLEGSDLAAIESHDENGGGDDDGGGDDDSSDDEPLAKRRKRLIKSHTDTGPSSGLHSVAHMAVTKTEDASDSDGDDNADDPEPSFVSVGTDDGQQPGPSGLGKASTDIPMEDAELENKTCMKCSKTYSTRRAFTRHRLRCNKEKTIACEMCHKKFKSKHEMSQHVRAIHSEYKAVFTCEICDAFFYTKATIYGEKSSQHFCIKCRKAFPSKSKLVKHTTRCAKERTVPCDLCGKMFKTQFEVRQHIEVVHTFPKDLYTCESCDAKFGSKAAFTRHEAKHLNEYRFHCNQCEKKYHIKQSLVHHIALEHRGIRYACEVCGKSFSSEHYYQTHAATHKDDYVPPQYKCGECGKMYGSRSGLSLHKITHKKPFYVCDICGKNLTTYKSLKQHMMLHTGEKPFACEMCGNRFNKQAILNSHIRTHTKAKPFICAQCGKGFSQRTPLVIHMRQHSGEKPYACQICDRKFITKTLLKTHSKTHGIALAYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -