Most038421.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- RpS26
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000089.1:1640893-1666804[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.44 1.4e+02 5.4 0.2 2 23 524 546 523 546 0.94 2 12 0.0015 0.49 13.2 0.1 2 23 551 573 550 573 0.94 3 12 0.2 64 6.5 1.2 2 23 764 785 763 785 0.97 4 12 0.00043 0.14 14.9 0.5 1 20 823 842 823 844 0.93 5 12 5.2e-05 0.017 17.7 5.7 2 23 854 875 853 875 0.98 6 12 0.004 1.3 11.8 1.1 1 23 888 910 888 910 0.98 7 12 2.7e-05 0.0088 18.7 0.5 1 23 918 941 918 941 0.98 8 12 0.00019 0.063 16.0 2.9 1 23 947 969 947 969 0.94 9 12 0.011 3.7 10.4 2.4 1 23 972 995 972 995 0.95 10 12 0.03 9.9 9.1 1.0 1 23 1014 1036 1014 1036 0.96 11 12 0.00028 0.091 15.5 2.8 1 23 1042 1064 1042 1064 0.98 12 12 0.098 32 7.5 0.7 1 11 1069 1079 1069 1081 0.91
Sequence Information
- Coding Sequence
- ATGGATAAGGTTTTGCTTCGTCTTCAAGGAGTGGAATTGTTTGTATATATGGACGATATCGTCATATATGCCAATTCGTTAGAGGAACATACCTGGAAACTTAGAAATCTATTGCAACGTCTAGAAAATGCCAATCTAACACTGCAACCTGAAAGGTGTTCATTCCTCCGGACAGAAGTTGCTTATTTAAGTCATGTTATTGGTCGCGATGGGGTAAAACCCGACCCCAAAAAGACGGTTGACGAAGGGGATGAATTTTCCGGCTCTAATTATGAACCGCTGAATGCTTACGCAAAGGCTGCTGGTTGTTGTGAAGCGATCGAATCGGCTGTCTCGGGTACGTCGGCGTGTGTTGTGGATTGCACCGTACCTGCGGTTATTCCTGAGACAGTCGGTCGCACTGGAAAGAATCCTCATACTTATTGTGAAGCGATCAAATTGATTGTCTCAGGTACTTGGGCAGGTGTTGTGGGTTGCACCGAAACTGCGAATATCCCTGAGGCAGTCGATCGCGCTGAGAAGAACCCTCATGGAAAATTTGCAGCTGGGCCCAGTAGGGTGGCCAAATTGGTTGAGTTAGGCATAGAAGTCAATGCAGCGGATTGCATTAGTCATGCGCCGACAGTCGGTCGACCACCGAGCGTTAGGAATCCGCTTAGAGGTGATTCATCGCTAGAGTCTACAGACGATACCATGACCCAAACCAATGATAATTGGCAATCTTCGAATTGTAGTTATCCTCAGACAAAATGCTTTCCAGTAGATAAAAATAATGACAATAATATTACTGAACCTATGCAACTTGATAACGATTTACCTGATCCAAATTCTGAATTTActtgtattaaaatttctaaagataaaTTGTATATGAGAGACGACAATCTTATTTTGTTCATTCCGACAGATTGTAAATTAACTACGGAAATTAGCCGTGAATTACTGGAAGCAAATAGAATAAATTATGATGACTTAAAACTTGAATCTCTCGAAAATCGGCAAATAGGCAATGTTATTGTTCATAAGTACGGTGAACATTGTGTTTTCTTTCTCATAATTAAAGAAACTTTCGATTCCAAATCTTTTGTCCAGCACATTTCTAATGCAATTACAGGACTTAAATACGCAATGGATGAATTAGATATTCAATCTGTAAGTATCTCGCGGGTGGCTGGTTTAAAACCGATCATGAAGCCGAAAAGCGTGGAAGAAATATGTCGACTATGTGGAGAGATATGCGAAAATGGCATATCAATATTCGAGAACAAATTGTCAGTCGCTGAGAAAATCAGCAGATGTTTACCAATAATTGTGCTTGCTAATGACGACTTGCCTTCACACGTCTGTAAGCGATGTCTCGCCTACTTAAACATCAGTTACAAATTGATTGTAAACTCGCTAAAAACTGACACATTTCTGcgaaataaattagaatttgagAAGCCGAATAAAAATGAAGCTAAGAGTAAAGAACCCACAAAGAAGCCCCAaactaattttataacaaaagagGAAGTTACAGCAGTGCcattcaagaaattaaagaaaatggcGATTTACGGTCCTGTGACCTGTGAGTTCTGCAACTTGATGTTTGAAGACGTCTACGAATTTGATGAACACTTCGAAACCAATCATATCTTAAAGTGGAAATGTAATTTCTGCGACGGAAGTTTTGAAACTTCTGATGAGCTGATTACCCATAAAGCAATGGCGCATGCTgggaatataattatttgtaaagCCTGCGTTGATGAAGAAACCGCTATGAGCCAAAAGCAAccgaaaattgaagaagataGTTTCTCTTCTGGTGAGGAACATGAGGATAAATTCTACATACCCTCAGAACCTATGTCACCGAAATCGCCAGAATCAGGTCTCAATCCTCCCGCTACTCCTAATCCTCCTCCTATTTTAAAATCTGCACTTAAGTCACCAACTCAAATTTCTAGTAATCAGTATTTTGAAACTCCTACTACTTCGCATTCAAAAAACATGTTACCCGCATCTTTCCTTGTTTCTCCCGAGTTGACTTCAAAGTTTCTCTCTAGTTCATCAAATGTCACtccgaaaattgttttttcttctaCTCTGGATACTCCTCAACTTACTTTTACTCCAAATGCTGAATCTTCATCGCCTGTAAACAACGGTGTAACACCTAGTGCCGAATCTTCTAAAACGACTAAGATAACTTCTGTCGACAAGTTAACTAAATCGGTGAGATTTTCGTTAAacgataaaattgaagaaataaagatTTCTGAGAATACTAAAACTTACATGACATGTGACGTGTGCCACCTTCGAGTGGATGATAAAAAGCTCTTTGACCTCCACCAAAAAATCCATCGGCTGAAAACTATGGTATGCCTTCTGTGTAAGGTGGAGGCCCCAACCATTTACGATCTTTATCTTCACAAACGAGAAGCTCATAATCTCTACTCGAAAGTTAATCTCAAATACGTTTGTGATAAATGCGGAAGGTTCTTCTCCAACAGTTGGCAGTGGGAGTCACACAAATCTCGCAGATGTAGAAACAGAGAAGGCAACAATAAATGCAAATACTGCGAAGCTTCCTTCTCTACGAATCATAAACTAAAACGTCATTATAGAaaacatAAAGAGGAGCTGATGAACGATCCCGAAGTTGAACCTTTCAGGTGTGTTTCGTGTcctaaaattttctatgatGAGGAATTTTACCAGAAGCATAGAAACgttCACGATCCTGAATgctggaacaattttaaatgcaacGCATGTGACCGATCTTTCAGAGATGCTGTGAGGCTAAGAGAACACATGAAGTCAATACACGAAGGAATTAAACCACACGCTTGTGATATGTGTGGAAAAACTTTCCACCGTTTATCCAATATGaaagtaCATCGAGCGCTGCACTTTGGTCATAAGTGCACTCACTgtgaacaaatatttgaaaaagtgcgTCAACTAGTGACTCACATTCAAGAAGATCATGGTTTGGAGCCACCAGCTAGCTTGTTGGCCAAGAAAGGATACGTGAGCGGAACTTACGTTTGTAGATTTTGTGGAAGAACTTTGGCAACTTATCAGTCTTTGCTGGATCATGAACATATTCACACTGGAGAGAAGCcttattcttgtcacatttgcgaTAAAAGTTTCCGaagTTACACGGCGCGCTGGTCCCACGTGCAGAGACACGAAAAGGGAACTTTCATCTGCGAACAATGTGGCAAAAGCTTCAGGTATGTCATTATGAAGCCTACCaacacGTGTAAACGCCGTAACGGAGGGCGTGCAAAACATGGCCGAGGCCATGTGAATCCTGTACGCTGTACGAACTGCGCACGATGTGTCCCCAAGGACAAGGCGATTAAAAAGTTCGTCATCAGGAACATCGTCGAGGCTGCTGCTGTGAGGGATATCACAGAAGCTAGTGTCTATCAGGCATACCAGCTCCCCAAATTGTACGCGAAGTTACACTACTGCGTATCTTGCGCTATTCACTCCAAGGTTGTGCGCAACAGATCTAAAGCTGATCGTCGTATCAGGACACCTCCAGCTCGCAACTTCCCCAGGgATAATGTTCGTCAACCCCAACCGAACCGAAAATAA
- Protein Sequence
- MDKVLLRLQGVELFVYMDDIVIYANSLEEHTWKLRNLLQRLENANLTLQPERCSFLRTEVAYLSHVIGRDGVKPDPKKTVDEGDEFSGSNYEPLNAYAKAAGCCEAIESAVSGTSACVVDCTVPAVIPETVGRTGKNPHTYCEAIKLIVSGTWAGVVGCTETANIPEAVDRAEKNPHGKFAAGPSRVAKLVELGIEVNAADCISHAPTVGRPPSVRNPLRGDSSLESTDDTMTQTNDNWQSSNCSYPQTKCFPVDKNNDNNITEPMQLDNDLPDPNSEFTCIKISKDKLYMRDDNLILFIPTDCKLTTEISRELLEANRINYDDLKLESLENRQIGNVIVHKYGEHCVFFLIIKETFDSKSFVQHISNAITGLKYAMDELDIQSVSISRVAGLKPIMKPKSVEEICRLCGEICENGISIFENKLSVAEKISRCLPIIVLANDDLPSHVCKRCLAYLNISYKLIVNSLKTDTFLRNKLEFEKPNKNEAKSKEPTKKPQTNFITKEEVTAVPFKKLKKMAIYGPVTCEFCNLMFEDVYEFDEHFETNHILKWKCNFCDGSFETSDELITHKAMAHAGNIIICKACVDEETAMSQKQPKIEEDSFSSGEEHEDKFYIPSEPMSPKSPESGLNPPATPNPPPILKSALKSPTQISSNQYFETPTTSHSKNMLPASFLVSPELTSKFLSSSSNVTPKIVFSSTLDTPQLTFTPNAESSSPVNNGVTPSAESSKTTKITSVDKLTKSVRFSLNDKIEEIKISENTKTYMTCDVCHLRVDDKKLFDLHQKIHRLKTMVCLLCKVEAPTIYDLYLHKREAHNLYSKVNLKYVCDKCGRFFSNSWQWESHKSRRCRNREGNNKCKYCEASFSTNHKLKRHYRKHKEELMNDPEVEPFRCVSCPKIFYDEEFYQKHRNVHDPECWNNFKCNACDRSFRDAVRLREHMKSIHEGIKPHACDMCGKTFHRLSNMKVHRALHFGHKCTHCEQIFEKVRQLVTHIQEDHGLEPPASLLAKKGYVSGTYVCRFCGRTLATYQSLLDHEHIHTGEKPYSCHICDKSFRSYTARWSHVQRHEKGTFICEQCGKSFRYVIMKPTNTCKRRNGGRAKHGRGHVNPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASVYQAYQLPKLYAKLHYCVSCAIHSKVVRNRSKADRRIRTPPARNFPRDNVRQPQPNRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -