Basic Information

Insect: Melikaiella ostensackeni
Gene Symbol: -
Assembly: GCA_032362435.1
Location: JAUMHM010000005.1:30792792-30807355[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00062 0.2 14.4 1.2 3 23 122 142 120 142 0.95

2 11 5e-05 0.016 17.8 0.6 1 23 160 182 160 182 0.98

3 11 0.024 7.9 9.4 4.4 1 23 188 210 188 210 0.98

4 11 0.0027 0.87 12.4 0.6 2 23 217 238 216 238 0.95

5 11 0.00035 0.11 15.2 3.7 1 23 244 266 244 266 0.98

6 11 0.026 8.5 9.3 0.6 3 23 519 539 517 539 0.95

7 11 0.0037 1.2 11.9 0.9 1 23 557 579 557 579 0.98

8 11 9.6 3.1e+03 1.2 0.1 13 20 581 588 580 590 0.86

9 11 3.8e-05 0.012 18.2 0.6 1 23 593 615 593 615 0.98

10 11 4.5e-05 0.015 18.0 0.6 1 21 621 641 621 642 0.95

11 11 6.7e-05 0.022 17.4 1.1 2 23 661 682 660 682 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00062	0.2	14.4	1.2	3	23	122	142	120	142	0.95
2	11	5e-05	0.016	17.8	0.6	1	23	160	182	160	182	0.98
3	11	0.024	7.9	9.4	4.4	1	23	188	210	188	210	0.98
4	11	0.0027	0.87	12.4	0.6	2	23	217	238	216	238	0.95
5	11	0.00035	0.11	15.2	3.7	1	23	244	266	244	266	0.98
6	11	0.026	8.5	9.3	0.6	3	23	519	539	517	539	0.95
7	11	0.0037	1.2	11.9	0.9	1	23	557	579	557	579	0.98
8	11	9.6	3.1e+03	1.2	0.1	13	20	581	588	580	590	0.86
9	11	3.8e-05	0.012	18.2	0.6	1	23	593	615	593	615	0.98
10	11	4.5e-05	0.015	18.0	0.6	1	21	621	641	621	642	0.95
11	11	6.7e-05	0.022	17.4	1.1	2	23	661	682	660	682	0.96

Sequence Information

Coding Sequence: ATGTCTCTCGAGAAGCAAGTAGCCGAGATTGTTAGTGCACATCAACAGGAGGATGACCAAGCTATACTCCTAGCTGGAATACAGGGCTATATAAACCACTGTAACACATTAGAACGCCTTGCTGGGGTTACACATGAAGCCTATGTAAAAGGCGACGATTTGTCACCAAATGCGAAGGAAGAATCATGGAACGATGTGAAAATTAACTCTGAGCCTCCAGAATATGAGTCCGTTGATGAAAATCACTTGAAAGAAGAACAGAAACATTTACCAAATTCTTATATACAAGGCAACAGTGATCTTCCAAAAAATGAACTAGGCACTCTCAAAATACCTATAATAAAACTTCCAAGACTTTATTGGTGCAATAAATGccagaaaaaattcgaaacctCTCAAAGCTTAAGGATCCACACAGAAGATCATGATCTCATGGAAAAGTCTGCAACTGACCCAACTGGCGCCACTACTAGACGTTACACCTGTCCCAcatgcaaaaaagtttttccaaaatttgccAAAGTAAAGGCTCACATGCTAAGCCACAAACCAGTTGATccttttaaatgcaaattttgcaaGGAAACCTTTCTAAAAAAGCGCAGCTTTAGAGAACACATGCTCCTTCATGAAAGGGGAGAATCTTGTGCGTGTGATATTTGCTCCAAAGTTTTTGCGAGCAAAGTTATTCTCAGCGATCATATAAAAAGGCATATGGATTTAAGACCCCACAAATGTGGAATCTGTGGTAAAGGATTTATTCGACCAACTTTTTGCAAGGATCATATGCGCACTCACACTCGAGAAAAGCCTTTTGAaaatgctCCACTGAAGACGTACGAGAGGAAAAAGATGCCTAGTTCGATTAAAGATGGAATAGACTTTCAGCCAACTAATTTTCAAAGGGGTCTTTTGGATAATTATGAGTGgaatgaaaatctgaaagagAAGATGCAGAGCATTGCAATAGTTGCAAAAGCTGAACCTGGGAGTGAAATTCAAGATAATGAAGATAGCAATTTGGTTCAAGATCAAAGGAGGTCTGGAAAACTGACTGAAagcgaaaattatattttatcttcTGTGAAAAGGGAACCTGAGGATAGATTAGATTCAAGTTGTGAGAAGTCTTTGGATGAGAGGGAAAAGAAGATAAGAAGAAAGTTAGAAAGTGGTTCTAGTGCAAGTAATTCTAATCGCACTTCGATTAAAGGTGAAATAGGTGTTCAGCCAATTAATTTTCAGAGGGttcatttgaaaacttatcGAAGCAAAGAGAATCTGGGAGAGAAGATAAAAAGTGGACACATTGCAGATAATCATTCTAAGCATACATCAGTAGTAGAAACAttgtCATCAAATGTGAAGGAAGATTCTTGGAAAAGCATCATGATCAAATCTGAGCCTCCTGAAAATGATTCCATTGATGAAAAgaacttgaaagaaaaacagaaCCATTTAACAGACTCCACTATAAAATGTAACAGTGATCTTCCAAAAAATGAAGTAGACACTTTACAACTACCTGTAGTAAAACTTCCAAAACTTTATTGGTGCAGTAAATGCCAAAAACAATTAACAACTGCTGAAAGCTTCAGGATCCACACTGAAGAGCATGATCTCATGGAAAAATCTGTGACTGACCCAACTGGCTCTAATACTGGACGTTACACTTGTCCTACatgcaaaaaagttttcctaaAATTCGCCAAAGTAAAGGCTCACATGCTAAGCCACAAACCAGATCATTTGAAAAGACACATGGATGAAAAGAAATATGTTTGTAAAATCTGTGCAAAGGGATTTGTTAGAATGCATGATCTTACTCTTCACATGGTTACTCACACAAAAGAAAAGCCTTTTCAATGCGATGATTGTAAAAAAGGATTCAGCTTCCGTTCTAGCATGAAAGTACACATACTTCGTAATATGAAAAATGGTGGACATCAAGAACGAgccataaaaaattctggaaataagGTTTGTGACATTTGCGGGAAGAGGTTTGCGTGTAAGTCTAATCTTGAGGCGCATAAAATGATACACTTGAATGAAAAGGCCTTTCAGCTAAGACTCGATTTCGGGAGAGACAACGTCGCCGAGCGGAGAGATATCACGTCACGAGCGCGCCTCGTGATTGGCTCATTCAATCCCTCTTCGCCGGGCCTGTTTCTCTCTCCAGAGAACGAAGCAGCGCGCGCAAGATCCGAACCACCGACCTGCGAATTGATGCGCGGATGGTCAGTTGATCTTCTATCACCCTCTAGGGACAGAGCTGCTCTCTGTCTTCGAACCTTGCATCGGGaaagtgtataa
Protein Sequence: MSLEKQVAEIVSAHQQEDDQAILLAGIQGYINHCNTLERLAGVTHEAYVKGDDLSPNAKEESWNDVKINSEPPEYESVDENHLKEEQKHLPNSYIQGNSDLPKNELGTLKIPIIKLPRLYWCNKCQKKFETSQSLRIHTEDHDLMEKSATDPTGATTRRYTCPTCKKVFPKFAKVKAHMLSHKPVDPFKCKFCKETFLKKRSFREHMLLHERGESCACDICSKVFASKVILSDHIKRHMDLRPHKCGICGKGFIRPTFCKDHMRTHTREKPFENAPLKTYERKKMPSSIKDGIDFQPTNFQRGLLDNYEWNENLKEKMQSIAIVAKAEPGSEIQDNEDSNLVQDQRRSGKLTESENYILSSVKREPEDRLDSSCEKSLDEREKKIRRKLESGSSASNSNRTSIKGEIGVQPINFQRVHLKTYRSKENLGEKIKSGHIADNHSKHTSVVETLSSNVKEDSWKSIMIKSEPPENDSIDEKNLKEKQNHLTDSTIKCNSDLPKNEVDTLQLPVVKLPKLYWCSKCQKQLTTAESFRIHTEEHDLMEKSVTDPTGSNTGRYTCPTCKKVFLKFAKVKAHMLSHKPDHLKRHMDEKKYVCKICAKGFVRMHDLTLHMVTHTKEKPFQCDDCKKGFSFRSSMKVHILRNMKNGGHQERAIKNSGNKVCDICGKRFACKSNLEAHKMIHLNEKAFQLRLDFGRDNVAERRDITSRARLVIGSFNPSSPGLFLSPENEAARARSEPPTCELMRGWSVDLLSPSRDRAALCLRTLHRESV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -