Basic Information

Insect: Melikaiella ostensackeni
Gene Symbol: -
Assembly: GCA_032362435.1
Location: JAUMHM010000085.1:20898763-20903322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0047 1.5 11.6 3.4 1 23 58 80 58 80 0.94

2 10 0.0012 0.38 13.5 0.3 2 22 90 110 89 110 0.95

3 10 0.00036 0.12 15.1 2.4 1 20 132 151 132 154 0.92

4 10 0.022 7 9.5 0.4 1 23 159 182 159 182 0.92

5 10 1.3e-06 0.00044 22.8 0.2 1 23 188 210 188 210 0.98

6 10 0.00037 0.12 15.1 3.1 1 23 217 239 217 239 0.99

7 10 0.00013 0.042 16.5 0.7 3 23 247 267 245 267 0.97

8 10 0.0003 0.098 15.4 0.2 1 23 273 296 273 296 0.96

9 10 0.17 55 6.7 0.1 1 23 310 332 310 332 0.93

10 10 0.067 22 8.0 0.0 2 23 563 584 562 584 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0047	1.5	11.6	3.4	1	23	58	80	58	80	0.94
2	10	0.0012	0.38	13.5	0.3	2	22	90	110	89	110	0.95
3	10	0.00036	0.12	15.1	2.4	1	20	132	151	132	154	0.92
4	10	0.022	7	9.5	0.4	1	23	159	182	159	182	0.92
5	10	1.3e-06	0.00044	22.8	0.2	1	23	188	210	188	210	0.98
6	10	0.00037	0.12	15.1	3.1	1	23	217	239	217	239	0.99
7	10	0.00013	0.042	16.5	0.7	3	23	247	267	245	267	0.97
8	10	0.0003	0.098	15.4	0.2	1	23	273	296	273	296	0.96
9	10	0.17	55	6.7	0.1	1	23	310	332	310	332	0.93
10	10	0.067	22	8.0	0.0	2	23	563	584	562	584	0.96

Sequence Information

Coding Sequence: ATGCCAAATGGAGAGGTAGCTCATTTCGAATACATGCCCCAAAATGCAATCTCGAATCAAATCGGACAATACAATTTGACACTAAATTCCTTTACAAATTCGGAAATGGTAAAAGTCGAAACTCTCCATCGAAGCAACTACATCGAAGTGGCAGTAACCGAAAATAAAGGACACACATGTAGTCATTGTGGTGTCAGTTTTAGTCGAGCAAACGCCCTGGCTTGTCACGAAAAGATTCACGAGACCAAAAATTGGGCCGCGCCGATTGAGTGCGAGTATTGCGACAAACAATTTCAGGATGGAAACCACTTGGCGACGCATCAGCAGACTTGTGCTAAGAGAATGATGCAGAGCAACATCGAACAGGGGATTCCTAATAACAAATGGAGCAAACACGCTTGTTCAGAGTGCGGGAAGAAATTCACCACCAAGCAGAAAATGTACAGGCATCAGTGGATCCACAGAAAGAAAACGCATTCCTGCGAAGTTTGCGGATCGCAGTTTGAAAAGCAGAATCAGCTGGACGAGCACAGGCTCGCTGCACATCCTGGAGATTCTCCCTTTACTTGTAACGAGTGCGGCAAGAGTTTCGTCTCTCGACAAGGTCTCTGGGAACATGGAAGGATGCACGCTGGAAGTCCAGCTCACTTTCAGTGTGATGCTTGTTCCAAAACCTTTTCTTCTCGCCAGGGTTATTTAATTCACCATCGAACGCACACCGGAGAACGACCCTACGGTTGCAAATTCTGCTGGAAATCTTTCCGAGACGGAGGAACGTTGCGAAAACACGAGCGAATTCATACGGGTGAGAGACCACATGTCTGTCCTCTTTGTTCAAGAGCCTTCAACCAAAAGGTGGTTTTGAGAGAGCACGTAAGATGGGTTCACGCCGCTGGAAAAAATGATTCTGGAGTCACCGGACCACCTTTTCCTTGTCCAATTTGCGGGGCGTTGAATCAAGACCGGGATGAACTTTGTGCGCATATCGTCAAGCATTCAGATCAGATGATTGCTGAGGCTAAAGCGAAAACCAACAACAATGCTCCGAAGGCAAAACCTGCGAAGAAAAAGGCAAAAGCTGGATCGACTTCGCAGGAAAAAATGCAGGATGAAAGTTTGATTTCGAGGTTGGAACAAAACGAGGCCTTGTTGTCAATAACCGACTCATCGATGACGTTGACTGACACGTCGACTAAATCTGATGATATGCAGATTGAAGAAGGACATGGTGTGGGTCAATTTAATGAAGAGGATGGCGATATAGTTTCGGATCAGGGTAACAGTCAATCGATAAAACAGAGTTCGGGTAAATTAGAAAGTAATCTTCAAGCCATTACCACCACGAGGAACAATCAGGTCGCTACGGTGCATTTAATTCCTTATTCTAGATCCAGTGACACTTTGCAAATTCTCTCTAATAAGCAAAATAATACTTTGCACTTGATATCAAAGCAAAACGAAAATTTGCCCGTTTTGGCGATTCCAAATCCTCAGGGTAATGAGAATTTTTCGAGCCAAATTACACATATTACTAATTCTGATTTGCCTATGAATATGGTCACGCATTCGGTGAAACAAAATCAAGCTTTAGAATCCCAGGTGGATGATCAAGGTTTGATACATGAAGATCAAACGAAAAGTAATATTCGTGAAGTTCAGTATGATAGTGATGATGGTGAGGAATTGGTTTGCGGAATTTGCGGGGATGATTTTGATGATAAGAATGTACTCATGGAACACGTGAAGATTcacatttaa
Protein Sequence: MPNGEVAHFEYMPQNAISNQIGQYNLTLNSFTNSEMVKVETLHRSNYIEVAVTENKGHTCSHCGVSFSRANALACHEKIHETKNWAAPIECEYCDKQFQDGNHLATHQQTCAKRMMQSNIEQGIPNNKWSKHACSECGKKFTTKQKMYRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLAAHPGDSPFTCNECGKSFVSRQGLWEHGRMHAGSPAHFQCDACSKTFSSRQGYLIHHRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNDSGVTGPPFPCPICGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKAKPAKKKAKAGSTSQEKMQDESLISRLEQNEALLSITDSSMTLTDTSTKSDDMQIEEGHGVGQFNEEDGDIVSDQGNSQSIKQSSGKLESNLQAITTTRNNQVATVHLIPYSRSSDTLQILSNKQNNTLHLISKQNENLPVLAIPNPQGNENFSSQITHITNSDLPMNMVTHSVKQNQALESQVDDQGLIHEDQTKSNIREVQYDSDDGEELVCGICGDDFDDKNVLMEHVKIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00089829;
90% Identity: iTF_00089829;
80% Identity: -