Most038789.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- -
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000182.1:1-17948[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0014 0.46 13.3 2.4 1 21 123 143 123 144 0.95 2 17 0.18 58 6.6 3.9 1 15 152 166 152 166 0.92 3 17 0.00013 0.042 16.5 1.7 1 21 257 277 257 278 0.95 4 17 0.0014 0.46 13.2 3.3 1 21 377 397 377 398 0.96 5 17 9.5e-05 0.031 16.9 2.9 1 21 516 536 516 537 0.97 6 17 4.9 1.6e+03 2.1 6.6 1 23 545 568 545 569 0.95 7 17 0.0012 0.38 13.5 1.2 1 21 611 631 611 632 0.96 8 17 0.0019 0.61 12.9 2.5 3 23 642 663 640 663 0.89 9 17 0.28 90 6.0 4.5 1 23 675 698 675 698 0.95 10 17 0.00059 0.19 14.4 0.5 1 21 804 824 804 825 0.96 11 17 9.3e-05 0.03 17.0 4.0 1 23 833 856 833 856 0.94 12 17 0.0021 0.67 12.7 5.8 1 23 868 891 868 891 0.96 13 17 0.0078 2.5 10.9 2.5 1 23 898 920 898 920 0.98 14 17 1.4e-05 0.0046 19.5 1.6 1 21 1008 1028 1008 1029 0.96 15 17 0.0044 1.4 11.7 4.7 1 22 1037 1058 1037 1058 0.95 16 17 0.0089 2.9 10.7 4.4 1 21 1139 1159 1139 1160 0.95 17 17 0.0011 0.36 13.6 3.6 1 19 1168 1186 1168 1186 0.97
Sequence Information
- Coding Sequence
- ATGCCCGCTATCGGTTCCTGGGGGAGGAAGAGAGAAGAAGGTAGCGCTGGGATGGCCCAGGCCTTGTGGGGACAGCAGGATTACCCGCTGTCTGACGatcAACAGAATTCCAAGAGTAAGTCGAAGAAACACACAGGAAGACAGGATGGTGGAACATATTCTTGTGCAACTACTCACATTTTTTCCGATGAGAACTCTCAAGCCAAGAATTTAACTTCCATAATTAAATACGAATATGACGCTACTTTGGAAATCAAGGAAGAAATTATCCAAGGTGAACAGGAAGATGTTATTTTGATTGCTAAAAAACAGCGTAGTGAAAAGAAGCAGAAAATTCAGGAATCAAAACAGGAACCGGAAAACAAGCACAAATGCGGAAAGTGTTTTCGAacctataaaaatgaagaaagtttgATTCGGCATCAAAAGTACGTATGCGACGTCATGCCGCAGTTCACTTGTAAATTTTGCAACAAACGATTTAAGCATCAACAGAACTCCAAGAGTAAGTCGAAAAACCCCGCAGGAAGGCAGGATGGTGGGTCATATTCCTGTGAAACTACAGACATTTTTTCTGACAACAGTTCTCAAGCCGAGAATTTAACTTGCATAATTGAATACGAAAATGACGAAACTTTTGATATCAAGGAAGAAATCATGCAACGTGAATGTACCATGGATATAagagaaaatgatattttggcTGCTAACAATCTGCGGATACAAAAGATGCAGAAAATTCAGGAATCTAAACCGGAACCGAAGAAGTACAAATGCGAAACGTGTGCTCGAGTCTATAAACGCAAATCTGATTTAAATAAGCATAAAAAATACGAATGCAACGTCATGCCACAGTTCAATCAACAGAATCGCAAGGGTAATTCGAAGAAATCCACAGGAAGACAGGATGGTGGGTCATATCCTTGTACaactactgaaattttttctgacaaCAATTCTCAAGCTAAGAATTTAACTTGCATAATTAAATACGAATATGACTCTACTTTGGAAATCAAGGAAGAAGTCATACAAGGTGAACAGGAAGATGATATTTTGACTGCTAAAAAACTGCGGAGAGAAAAGAAGCAGAAAATTCAGCAATCAAAACAGGAACAGGAAAACGAGCACAAATGCGAAAAGTGTTTTCGAACCTATAAAAAGAATGGAAGTTTGATTCGGCATCAAAAATACGTATGCGACGTCATGTCACAATTCAATGATCAACAGAATTCCAAGAGTAAGTCGAAGAAATCCACAGGAAGGCTGGGTACTGAGCCATATTCCTGTAAAACTACAGACATTTCTTCTGACAAGAGTTCTCAAGCCGAGAATTCAACTTGCATAATTAAATacgaaaatgatgaaactttggATATCAAGGAAGAAGTCATTCAAGatcaagatGATCCTGGAGAATTGGTTAATGAAGAATTCGAGTCAAAATTCTTTACCGATGTTAAAAGTGAAGATGATATTTGGGCTGCTAAAAAACTGCGGAGCCAAAAGGATCAGAAAATTCAGGAATCAATACCGGAAAAGCAATACAAATGCGAAAAGTGTGCGCGAAGCTATAAACAGAAACATAATTTGACTGCTCATCAAAAATTCGCTTGCGACGTTAGGCCACAGTTCACATGTAAATTCTGCGATGACCGATTTAAATGGAAATGTGACTTGACTCGTCATGTGGATCGCAAACATCACGATGAAAGATTCGAGTCAAAATTGTGTACCGTAGATATAAGAGAGGATGAAATTTTGGCTGCTAACAATCTGCGGAGCCAAAAGACGCAGAAAATTGAGGAACCCAAAGTGGACCCGAGGAAGTACAAATGCGAAAAGTGTGCTCGAAGCTATAAAcggaaaaatgttttgactgCTCATCAAAAATACGTATGCGGTGTCATCCCACAGTTCGGTTGTCAATTCTGCGGCAAacgatttaatttaaaaagtcacaTGAAGAGGCATGTATATGAGGTTCATCAGAAAACAAACGCAACGACATCGAAAACGAAGCATCATTGTGACAACTGTTCTCGAAGCTACAATTGGCCAAATGATTTAACTCGACATAAACGGTTAAAACACTCGGCAGTCAAACCACAATTTTACTGCGATTTTTGCGATTACAAAACTGAACatgAACAGACCAAGAGTATGTGGAAGAAATCAATAGGAAGACAGGATGGTGGGCCATGTTTTTATATAACTACTGACATTTTTCCTGACAGTAAGCCTCAAGCCAAGAATTTAGCTTGCATTATTAAATACGAACATGACGCAACTTTGGAAGTTAAGGAAAAAATCATGCAAGGTGAAAGTGAAGATGATATTTTTGCTTCGAACAAACTGTGGAGCCAAAAGACgcaaaaaattcaggaatctAAAACGGAACTGAAGAAGTACAAATGCGAAAAGTGTGCGCGAAGCTATATCCGTAAGGGAGGTTTGGTTAAGCATCAAAAATACGTATGCGGCGTCATGCCACAGTTCAGTTGTCAATTCTGCGGCaaacgatttaaattgaaaagtcacATGAAGAGGCATATAGATCAGGTTCATGAGAAAACAAACGCAACGACATCGAAAACGAAGCATCATTGCGACAACTGTTCTCGAAGCTACAATTCCTCAGATTCTTTGAAACAACATAAGCGTCGTGTACACGCAGCAGTCAAGCCACAATTTAATTGCGACATTTGTGTCTACAAAACCAGACGCAAAGGATGCTTGTTGCAGCACATCAATTCACATCAGCAGAATTACAAGAGTAAGTCGAAGAAATCCACAGGAAGACAGGATGGTTGGCCATATTCTTTTATAACTACTGACATTTTTTCTGGTATCAATTCTCATGCCAAGAATTTAACTTGCACAATTGAATACGAAAACGACGAAACTTTGGAAATAAAGGAAGAAATAGTCCAAGGTAATAGTGAAAGTGATATTTTGGCTGTTAACAAACTGCGGAGTCAAAAGAAGCAAGAAATTCAGGAATCAAATCtggaaaagaaatacaaatgcgAGAAGTGTGCTCGAAGCTTTaagcagaaaaataatttgactgcTCATCAAAAATACGTATGCGACGTCATGCCACAATTCAGTTGCCAATTTTGTTTCAGACGATTTAGACAGAAAAGAACCTTAAGTCGCCACACAAGGAGAAGGAGTGAGTCGAAGAAATCATCAGAAAGACCATATGGTGGGCCATATTATTTTGTAACTACTGGCATATCTTCTGACAATAATTCTGATGCTAAAACTTCAACTGGCTCTATTGAATACGATAATGATGAAACTATAGAAGTCAAGGATGAAATCATCCAAGaagatgatATTGCGGCTCCGAACAAAATCCGGACccaaaagaagaagaacattcagaaatcaaaacaggaaaagaaatacaaatgcaACAAGTGTGCGCGAAGCTATTCCCAGAAAAGCAGTTTGAATTGTCATCAAAGATACGAATGCGACGTCATGCCACAGTTCGAATGTAAATACTGCGGCAAACAATTTAAACGGAAAACGTCCATGAGCCATCAC
- Protein Sequence
- MPAIGSWGRKREEGSAGMAQALWGQQDYPLSDDQQNSKSKSKKHTGRQDGGTYSCATTHIFSDENSQAKNLTSIIKYEYDATLEIKEEIIQGEQEDVILIAKKQRSEKKQKIQESKQEPENKHKCGKCFRTYKNEESLIRHQKYVCDVMPQFTCKFCNKRFKHQQNSKSKSKNPAGRQDGGSYSCETTDIFSDNSSQAENLTCIIEYENDETFDIKEEIMQRECTMDIRENDILAANNLRIQKMQKIQESKPEPKKYKCETCARVYKRKSDLNKHKKYECNVMPQFNQQNRKGNSKKSTGRQDGGSYPCTTTEIFSDNNSQAKNLTCIIKYEYDSTLEIKEEVIQGEQEDDILTAKKLRREKKQKIQQSKQEQENEHKCEKCFRTYKKNGSLIRHQKYVCDVMSQFNDQQNSKSKSKKSTGRLGTEPYSCKTTDISSDKSSQAENSTCIIKYENDETLDIKEEVIQDQDDPGELVNEEFESKFFTDVKSEDDIWAAKKLRSQKDQKIQESIPEKQYKCEKCARSYKQKHNLTAHQKFACDVRPQFTCKFCDDRFKWKCDLTRHVDRKHHDERFESKLCTVDIREDEILAANNLRSQKTQKIEEPKVDPRKYKCEKCARSYKRKNVLTAHQKYVCGVIPQFGCQFCGKRFNLKSHMKRHVYEVHQKTNATTSKTKHHCDNCSRSYNWPNDLTRHKRLKHSAVKPQFYCDFCDYKTEHEQTKSMWKKSIGRQDGGPCFYITTDIFPDSKPQAKNLACIIKYEHDATLEVKEKIMQGESEDDIFASNKLWSQKTQKIQESKTELKKYKCEKCARSYIRKGGLVKHQKYVCGVMPQFSCQFCGKRFKLKSHMKRHIDQVHEKTNATTSKTKHHCDNCSRSYNSSDSLKQHKRRVHAAVKPQFNCDICVYKTRRKGCLLQHINSHQQNYKSKSKKSTGRQDGWPYSFITTDIFSGINSHAKNLTCTIEYENDETLEIKEEIVQGNSESDILAVNKLRSQKKQEIQESNLEKKYKCEKCARSFKQKNNLTAHQKYVCDVMPQFSCQFCFRRFRQKRTLSRHTRRRSESKKSSERPYGGPYYFVTTGISSDNNSDAKTSTGSIEYDNDETIEVKDEIIQEDDIAAPNKIRTQKKKNIQKSKQEKKYKCNKCARSYSQKSSLNCHQRYECDVMPQFECKYCGKQFKRKTSMSHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -