Most034150.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- Prdm15
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000085.1:56985510-57011468[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0094 3.1 10.7 2.6 1 23 541 563 541 563 0.97 2 12 0.043 14 8.6 1.3 1 23 568 590 568 590 0.96 3 12 8.1e-05 0.026 17.2 1.1 2 23 600 621 599 621 0.97 4 12 2.5e-05 0.0081 18.8 7.6 1 23 717 739 717 739 0.98 5 12 0.0044 1.4 11.7 1.1 1 22 744 765 744 768 0.90 6 12 1.9e-05 0.0061 19.2 0.5 1 23 806 829 806 829 0.94 7 12 2.7e-05 0.0087 18.7 1.5 1 23 861 883 861 883 0.98 8 12 0.00027 0.09 15.5 4.0 1 23 897 919 897 919 0.96 9 12 0.00095 0.31 13.8 6.7 1 23 925 947 925 947 0.98 10 12 0.00041 0.13 15.0 1.4 1 23 953 975 953 975 0.98 11 12 0.00016 0.052 16.2 6.6 1 23 981 1003 981 1003 0.97 12 12 0.00036 0.12 15.1 0.3 1 21 1009 1029 1009 1030 0.93
Sequence Information
- Coding Sequence
- ATGTTACTTCTGTTAATACTACCCAGCACTCACCATGTGGAGGTGGCTGCACATCAAATACCACCTCTACCATTCCACACACTCGGAAAGATAACAGAATTAAAGTGGCTTGCAATCGGATTTGGTTTTAAATACGCAATTCACTTATCTCTCATCTGCCTGATTGTGACAAGGCAATTGCAAGCAATTTCGTCAGGTTTCTTGTCGCGAATCGATGCAGACGAAAATGCCGCTATACGTGAAATTGCTATTAGAAGACGTGATGAGATGGATAAGCCACCACTCATTATCGACGAACTCACTAGATTATGCACCAATTGTAACCGATCTGTTCGAGATGAAGTAGCTGTAGTCGAGCATAATTCCCATGCCTTAAAATTAAACGTATTAACGCAAACTGCAGATCCACCAGATGGTTACATGCTGGACATCCATGGACCATACTTTTCAGACTCACGAAACGACGATGCTGCGATGCTAAACAATGAGTTTCAAAGAGACACTGATAGAATGAGAGAATGGTCCCAAGAAGGGTCGATCTTAATAGTCGAAAGAGGCTATCGTAATGCTTCTGCTCTGTTACAACAACTAGGAGTTACATGGAAAATGCCCGCACATCTCCGGCCGGGACTCGGTGTCTATCAGGTCAACTTAGCTCCTTCGTACATTGAGGACAAGTTacaaagaaaggaaaaagaagaattccaGTTGGTCATGAATCAGCAACATAATGACATTATACCAGAGCCTGGTGTGTTCAGAGTTAGAGTTTATTCACGATTCACAAATGCAGCTAGACACCAACTTTGGATTGCTTATCTACCAACTGACGAGGAGGAACCAGACTGCAATGATGATCCAACCCAGGGGTATTATTGCACGTGCAAATCAGGTGCACGAACTCTTGGCTCATGTGCACACGTGACAAGCGTACTATGGTTCATGGAATATGCACGacatgaaaataatgtttgGCATCCCTCAAATCATCTTCTTCATACAATACTAAAAGGTGATGGCCTTCCATCGAGCATCTGCCTTACATGCCTTTCAAAACTTAATGCAGCTCATGAGTTTAGAGAGCAGTGCCAAATAGCAGATAGAACACTTAGAAGAGCTTATGAAAAGCTTCAGATAAATTTTAACTTAGACTTATCAGCATCCCAAAAAAATCAGTCATCACAAACTGAAGGTAGAATTCTACTGTTCGTTAAGGACGAAGAAGATGAaaccaaaaaacataatttttcaaaaagtgatcaCTCTACTAGTAATTCAAAAACAAGTAGTGAAGTTGATGCAAAATACCATTATCCTTGCGACccagaattaaatattaatgagTCATCTGTTACTAACGAATCGTCGAACAAAGACGATAGTTCTCAGCTGGAAAAAGGAAATGCCCCCTTCAAAAGAGAAGGTTGTAAGACAAGAAAAATGTCTATGTTCAAGAGAGTGACATCTATggaaagtttgaaaagtttcaaggaaAGACAGAGAAAGCACATTAAGAAAAACACAAATACGAAACCTGAATCAAATGAAATAGACTTACCCGTGGAAACGAGGGTGCGAAATGCTAATCAAAGACTAAGCAACGAAGGAACGGAACTGCGTCATGAATGCACCATATGTAAGAGCACTTATTCCAGTAAGCGAGCTTTGGACAAACACTCATTGACTCATGGCGACAAGAAGTTCAAGTGCGAAAAGTGTGAGAAGGAATTCTTGAGGCTTGAGAAATTGTTAGAACATTTCAAGTGGCACCAATCGAAAGAGAAACCTAAACCCaTACGCTGTAAGATTTgtgaaaagagttttaaaaagaCAGACACGATGGTAAGACACTTGAACGTTCACAAGAGAGCGAATCCTAAAGAGGTATTTTCCATTCTCAAGGAAATCagagataaaagaaaaatggataattctattgaatctattgaagaaaatgatgaatccgTTAATAACGAATCAATTTCTGAAAAGGTGGAGGCATCGTCAAAACAAGGGAACAACATTTACACTAAGGAACTCAGAAAACGTGTGACAGATTCTCAACCCAAGCAAGATAACCGATCCGATATTTTAAATTCGGATTCTTATAGTGAGAGTGAATCGAATTCTGTAAATGATGCATCGCTATTTCGATGCAAGCATTGCACGAAGTGCTACACCACCGAAAAGTCCTTGCAGAGGCATATGCTGATACAtggtgataaaaaattcatttgcaatGTCTGCAATATGAAGTTCTTTAGACCGGACAGACTGAAAAGTCATAGAGACAgGTACGGACACAACGAGGACAAAGTTTCTGAACCAGAAAAGCCTCCTGATGACAAGTCTgccataaaattaataaacagtTGGATAAGAGAAGAATTGGACTCTGACAACGAAGGCAAGGGTTTCCCCTGCGACCTTTGCGGAAAATCTTACGTTACCAAGAAATCCTTAGCTAAACATCGGACAAATGCTCACGAGTCTCAAGAAAACTATTGCGACAACTGCGGGACTGAGTGCGTCTGCGAAGATAAgccaaaaatttatgtaaaaacagaaaaaagtaaaatcttcACCTGCGACGAGTGTAGTAAATCCTTCGAAAAAGACAGCAGGCTGCAAAAACACTTGAGAATCCACGAGCGCGCTAAAGAACAACAGGAtacgaatttcaagagattcctttGCCACATCTGCAGCAAAACTTTTAGGCAAAATACAGGACTTATGTTCCATATGAGAACACATACGGGTTACAAACCACACGTCTGCAAACATTGCGGTCGCGGATTTACCTCCAACTCTAATTGCATTAACCACGAAAGAACGCACACCGGAGACAGACCCTTTGTTTGTCAATATTGTAGCGCTGCTTTCGCCAAATCTTGCACTTTAAAAGCGCACATCACAACGCATACCGGAGAGGCGAATTACCACTGCAAAACTTGTGGCAAATCTTTCAGGAGATTGAAATACTTGAAGGAACATAAGTTTACGCATACTGGCGAAAAGCCTTACGCTTGTAAAATCTGTGGTACTGCCTATAGCCACTCAGGTAGTTTATTCGTGCACGAGAAAAAATGCAAAGCTCAGTATAGCAATTTTCAGTCCGCATCCTCTCAAAACGCACAAAACTTTTGCCAATCGCAAACAAATATTGTGACAACATCTCCCATTGTCACGCCTTTAATGACGACATTACCACCGACTCATCATTTGGGAAATATGAACAACTCCTTAGGTGTTCAagctaataaaaattatttagaaagtGTTCAGAGAATGAACACTCATGCTGCTGCAGTTGCTGCTGCTGCTGTAGGTGGCAGTGCAGGATTGCATGTTCACGCAAATACAGATGTATCTGACATGGCATCTGCAGTGAGGAATTTCGCTATAATTGGGCAGATGTTCCATTAA
- Protein Sequence
- MLLLLILPSTHHVEVAAHQIPPLPFHTLGKITELKWLAIGFGFKYAIHLSLICLIVTRQLQAISSGFLSRIDADENAAIREIAIRRRDEMDKPPLIIDELTRLCTNCNRSVRDEVAVVEHNSHALKLNVLTQTADPPDGYMLDIHGPYFSDSRNDDAAMLNNEFQRDTDRMREWSQEGSILIVERGYRNASALLQQLGVTWKMPAHLRPGLGVYQVNLAPSYIEDKLQRKEKEEFQLVMNQQHNDIIPEPGVFRVRVYSRFTNAARHQLWIAYLPTDEEEPDCNDDPTQGYYCTCKSGARTLGSCAHVTSVLWFMEYARHENNVWHPSNHLLHTILKGDGLPSSICLTCLSKLNAAHEFREQCQIADRTLRRAYEKLQINFNLDLSASQKNQSSQTEGRILLFVKDEEDETKKHNFSKSDHSTSNSKTSSEVDAKYHYPCDPELNINESSVTNESSNKDDSSQLEKGNAPFKREGCKTRKMSMFKRVTSMESLKSFKERQRKHIKKNTNTKPESNEIDLPVETRVRNANQRLSNEGTELRHECTICKSTYSSKRALDKHSLTHGDKKFKCEKCEKEFLRLEKLLEHFKWHQSKEKPKPIRCKICEKSFKKTDTMVRHLNVHKRANPKEVFSILKEIRDKRKMDNSIESIEENDESVNNESISEKVEASSKQGNNIYTKELRKRVTDSQPKQDNRSDILNSDSYSESESNSVNDASLFRCKHCTKCYTTEKSLQRHMLIHGDKKFICNVCNMKFFRPDRLKSHRDRYGHNEDKVSEPEKPPDDKSAIKLINSWIREELDSDNEGKGFPCDLCGKSYVTKKSLAKHRTNAHESQENYCDNCGTECVCEDKPKIYVKTEKSKIFTCDECSKSFEKDSRLQKHLRIHERAKEQQDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKHCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNFQSASSQNAQNFCQSQTNIVTTSPIVTPLMTTLPPTHHLGNMNNSLGVQANKNYLESVQRMNTHAAAVAAAAVGGSAGLHVHANTDVSDMASAVRNFAIIGQMFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -