Basic Information

Insect: Melikaiella ostensackeni
Gene Symbol: -
Assembly: GCA_032362435.1
Location: JAUMHM010000050.1:3030310-3043264[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.4 4.5e+02 3.8 0.3 1 21 330 350 330 353 0.87

2 10 0.014 4.7 10.1 2.3 2 23 361 382 360 382 0.92

3 10 0.0001 0.033 16.9 4.4 1 20 388 407 388 410 0.97

4 10 2.8e-05 0.009 18.6 1.7 1 23 416 438 416 438 0.98

5 10 5e-06 0.0016 21.0 4.5 1 23 444 466 444 466 0.99

6 10 5.2e-05 0.017 17.8 0.4 1 23 477 499 477 499 0.98

7 10 7.3e-06 0.0024 20.4 0.8 1 23 505 528 505 528 0.97

8 10 1e-05 0.0033 20.0 1.5 1 23 534 556 534 556 0.94

9 10 2.3e-05 0.0075 18.9 0.3 1 23 562 584 562 584 0.93

10 10 2.1e-05 0.0069 19.0 0.4 3 23 592 612 590 612 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.4	4.5e+02	3.8	0.3	1	21	330	350	330	353	0.87
2	10	0.014	4.7	10.1	2.3	2	23	361	382	360	382	0.92
3	10	0.0001	0.033	16.9	4.4	1	20	388	407	388	410	0.97
4	10	2.8e-05	0.009	18.6	1.7	1	23	416	438	416	438	0.98
5	10	5e-06	0.0016	21.0	4.5	1	23	444	466	444	466	0.99
6	10	5.2e-05	0.017	17.8	0.4	1	23	477	499	477	499	0.98
7	10	7.3e-06	0.0024	20.4	0.8	1	23	505	528	505	528	0.97
8	10	1e-05	0.0033	20.0	1.5	1	23	534	556	534	556	0.94
9	10	2.3e-05	0.0075	18.9	0.3	1	23	562	584	562	584	0.93
10	10	2.1e-05	0.0069	19.0	0.4	3	23	592	612	590	612	0.98

Sequence Information

Coding Sequence: atgaattggGAAGTGAGCACAGCTCCGATGTGTCGAGCTTGTATGGAAATTGATGGAACATTTGTTCCTTTGGACGACGGTTCCACgaacaagaaaaatttacttCGGAAACTTGTTGATTTAACGTCGATTAATATTAACGAAAACGATGGCTTGCCGACCATGCTCTGCACAAAATGTGCTTATCGCACAAATGCTTTctacgaattcaaaattcaagttaaagAAACCGAGAGGAAACTTAGGAAAATGTTCGAGGTTTCATCCTATTCCTTAAAGGAAGAGATTTTCGACGATGACTACGGGAATATCGGAAATACAGAATCGCCGCAGGCTCCTCAACAGGAATTCATCAACTACACGGATGGAGATATTCCAAAGGAACAAgcaattcaaatattagaaGTTACAAATGACATGCTAGATCCCACACTGCAGAAGATTTGCCTCGAACCTCAAAATATGCAACTCCTAAAAGATGAGAAAAACAATGatatcacaaatatttttaactccAGTGATATACAATACACAATAGCATATATTCCTGACGAGACGATAAATTCTGTACTGAATAGAGACGCTATTCAAGCAGTTCTTAACAATCCGGAAATCAGTTTAGTAAGCACTACTAAATTTAAACACTCAGAGTCTCTTAAACGTAATGCAGCAAACGAATCGTCAAATCACTTGCAGTCTGTAGAAGTTATTGAAGCCCTGGTAAACTCGCATCTGGAGGGACATAGTCTGGAAGAATCAAAGCTAGAAAATACAGAGTTGCAAGCCATATCTGATGTCGATCCCTCTTCCATCACTGAGAACAAAGGAAACCAAGAAATAAACGAAAACACAGGACGTGAGAATTCGCTCGACAGTGAAGAGTCtgactctgaatattttatCGGTCCGAAAGACGATATAGTGGGAAGCCTCAACGATACAATAACGAGGAtcaaggaaataaaaaaggacGGAGACCTAGTGGAGTATCAATGCACCCTTTGTCTGCAAAACTACAGAGAACTCTCAAAAGTTTTGACTCACGTAGTGGAAAACCATGTACCCAGCTCAGGCCCATTCTTCTGTATCGTATGCGAAAAAGACTGCAAGAGTCGTCGAGAATTGAGAGCTCACGTTAAGACCCACACTGGACAGTTCCCCTACACTTGCTTTATCTGTAACAAGACTTACGCGACGAAAAGGTACTTGAAAAGACACATGGTTTGTCACACGGATTTCCCGAGACATCGTTGCCCGAAATGTGGTGTTCGTTACAAACTCAAATCCGAATTAGAAACCCATTTATCTACTCACGCTCACGGACCAGCATATCAATGCAATCAGTGTTCGCGTGTATTTAACCATAAAGGAAACTACAAACGCCATCTAATGTCTCATTTAGATCCGTTAAGTCTCCACCTTCCAAAGTATCCTTGTGGCGTATGCGGAAAACGGTTTCTCAACAACCGAACCCTAGAAACTCATCGGAGAGTACACACTGGAGAAAAACCTTACAAGTGTGTTTcgtgcaataaaaatttttcgcagCAAGGTAACCTTCTAAATCACGTGAAATCAGTTCACTCGAATCCACGGAGTCATACGTGCGACGTTTGTGGGAAGAGTTTCAATCAGAAAGCGACTCTAAAGGATCACAGTCTCCTACACACAGGTGAGAAACCTTATGTGTGTACAGTTTGTGGAATGGCATTCACGTTTAGTTCTGCGATGAGACGCCACATGTGGACTCATAATGGAGGAAAGCCATTTGGGTGCAATGTTTGCCAGGCGCGATTTATTGGCAAGTATGATTTGAAGAGGCATATGAGGATACACTCACAAAGGCCAAAGTCCAACAAAAGACGAAGTCTGTCCAATCAGGACGTTTTGGTTCCTGAAGAACtaatgaaagaaattgttttagaGCATACGACAGACGGAGGAACGATATTGATTGAACCGATTCTGCTTGCTGAAGACCCGACGCAAATTATCCAAGAAAAAGAATCAGAGAAGGAAAATGTAGATGCCCTTTTCAGTCTTATTCAGTAtggttga
Protein Sequence: MNWEVSTAPMCRACMEIDGTFVPLDDGSTNKKNLLRKLVDLTSININENDGLPTMLCTKCAYRTNAFYEFKIQVKETERKLRKMFEVSSYSLKEEIFDDDYGNIGNTESPQAPQQEFINYTDGDIPKEQAIQILEVTNDMLDPTLQKICLEPQNMQLLKDEKNNDITNIFNSSDIQYTIAYIPDETINSVLNRDAIQAVLNNPEISLVSTTKFKHSESLKRNAANESSNHLQSVEVIEALVNSHLEGHSLEESKLENTELQAISDVDPSSITENKGNQEINENTGRENSLDSEESDSEYFIGPKDDIVGSLNDTITRIKEIKKDGDLVEYQCTLCLQNYRELSKVLTHVVENHVPSSGPFFCIVCEKDCKSRRELRAHVKTHTGQFPYTCFICNKTYATKRYLKRHMVCHTDFPRHRCPKCGVRYKLKSELETHLSTHAHGPAYQCNQCSRVFNHKGNYKRHLMSHLDPLSLHLPKYPCGVCGKRFLNNRTLETHRRVHTGEKPYKCVSCNKNFSQQGNLLNHVKSVHSNPRSHTCDVCGKSFNQKATLKDHSLLHTGEKPYVCTVCGMAFTFSSAMRRHMWTHNGGKPFGCNVCQARFIGKYDLKRHMRIHSQRPKSNKRRSLSNQDVLVPEELMKEIVLEHTTDGGTILIEPILLAEDPTQIIQEKESEKENVDALFSLIQYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00201015;
90% Identity: -
80% Identity: -