Most022309.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- -
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000072.1:11584152-11594318[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.041 13 8.6 1.5 1 20 166 185 166 187 0.92 2 12 0.0096 3.1 10.6 0.4 2 23 224 246 224 246 0.91 3 12 5.1e-05 0.016 17.8 0.1 1 23 252 274 252 274 0.98 4 12 3.5e-06 0.0011 21.5 2.6 1 23 280 302 280 302 0.96 5 12 0.0052 1.7 11.5 4.5 1 23 311 333 311 333 0.96 6 12 6e-05 0.019 17.6 1.0 1 23 339 361 339 361 0.97 7 12 9.5e-07 0.00031 23.2 0.8 1 23 366 388 366 388 0.98 8 12 0.002 0.64 12.8 3.9 1 23 395 417 395 417 0.98 9 12 2.4e-05 0.008 18.8 0.3 2 23 437 458 436 458 0.97 10 12 9.1e-06 0.003 20.1 1.0 1 23 465 488 465 488 0.97 11 12 0.0012 0.41 13.4 0.3 1 23 494 516 494 516 0.97 12 12 1.5 5e+02 3.7 0.7 1 10 522 531 522 532 0.88
Sequence Information
- Coding Sequence
- ATGGAAGAAGACTCTGATAAAGACAAAGTTTATCTAGGGTACTTGATGGCTTTAGATCAAAATCAAGTAAATTTGGAAATGGATCAAACGGAAACTTCCTTACATAATCTGAAGTTGCCAGTCATTTCTGACAATGAGGAGAGCCATGGGAAAAAACTGAGGCctgaaaccggagacactgatgtggatctatactgcATTCCTACGACCCAGGCTAACCTAagcggcggtggtctggtggagcagggtcaAACTGTCcgctgtgaaatctcgactggaaaggAAAGAATCAGGGGACTAATTCTAAGAGccgtcactggtgcctcgaagtcgacatCCACGGTGGCTTTGAAGGCACGATCAGGGTTGGAGCCTctccatcttaccatcaaggccacgactgcgaaggcagcctggagaatgaACATGGTTCACCCAGGCTTGACTACTTTTTTCCAAGTCCTACATGAACCCGAAGCAAGTGACGACAATTGTTTTGAGTGTCTTCAGTGTGGTGGTTGCTTCAAAACACAACAAACTTTCGATAGCCATAAAATAATGTGCGATAAAAGAGAAGAACCCTACTTACTAGATGTTGAGGGTTCGGATTGTTtagattcatcattcaatgaCGTTGATGTTTTATTCGATCCATCTGGAATGGAGCGAACTTGCGGATACTGCCAGACAATTTTTGATACTCGAAAAGAGATGCAAACTCATGTAGCAGAAACTCATGAGGGTCAGAGTTTGTTTAAGTGCAATATTTGCGAAAAAGCCTACGAGAAATGGTCGAGTTTGGATATTCATGCAGCTACGCACCGAACGGATAAACCCTATCTTTGTGATCTATGTGGAAAGAgctttaaacattcaaataatttgaggGGTCACAAAAGGATTCATTTAGAGGAATCGAAAAAGAAAAGACATGTTTGTGATAATTGCGGAAGCGCCTTTAGGTCTAGaTTTCACTTGGGCGAACACATGCACCAGCATACTGGCAACAAACCGTATGCTTGTGATCAATGTGGAAAAGCTTtctttaagagaattcaattaAGGCAACATAAACTTTCTCACGGAGTTAACAAACACGAATGTCCAGTTTGCGGAGTTACATTTAATAGAAGGGGAAACATGAAAGCGCATCTCAAGAGGCACGATAAAGGCGATGGACTCTATACTTGTAGTgTCTGCGAGCGCCAGTGTAAATCGATGAGTGAATTGAAATTACACCGGAAGCAGCATACTGATCACGATATCAtcgaaagtataaaaaaaaaatcaggtgaCAAGATTATTTGGTCGTGCAAAATATGTTCGAAGGTATTcccaaaacaaattttgcttCGAAATCACGAACGCGTTCATGTcagtgaaaaatgcaactttcaGTGTGATGAATGTGGTAAGAAATTATCCAGCAAAAGCTCTCTAGCTTATCACAAGAAATCGATACACTCGAACGAAAAACCTCACGTGTGTCAATTTTGTGGAGAAGCTTTTGTGTCCAAGGATGCAAGGCTTATACATGAAAGAATTCACACCAAAGAACGTCCGTATACCTGCAAAATTTGCAACATGCACTACAGGTAA
- Protein Sequence
- MEEDSDKDKVYLGYLMALDQNQVNLEMDQTETSLHNLKLPVISDNEESHGKKLRPETGDTDVDLYCIPTTQANLSGGGLVEQGQTVRCEISTGKERIRGLILRAVTGASKSTSTVALKARSGLEPLHLTIKATTAKAAWRMNMVHPGLTTFFQVLHEPEASDDNCFECLQCGGCFKTQQTFDSHKIMCDKREEPYLLDVEGSDCLDSSFNDVDVLFDPSGMERTCGYCQTIFDTRKEMQTHVAETHEGQSLFKCNICEKAYEKWSSLDIHAATHRTDKPYLCDLCGKSFKHSNNLRGHKRIHLEESKKKRHVCDNCGSAFRSRFHLGEHMHQHTGNKPYACDQCGKAFFKRIQLRQHKLSHGVNKHECPVCGVTFNRRGNMKAHLKRHDKGDGLYTCSVCERQCKSMSELKLHRKQHTDHDIIESIKKKSGDKIIWSCKICSKVFPKQILLRNHERVHVSEKCNFQCDECGKKLSSKSSLAYHKKSIHSNEKPHVCQFCGEAFVSKDARLIHERIHTKERPYTCKICNMHYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -