Most004675.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melikaiella ostensackeni
Gene Symbol
-
Assembly
GCA_032362435.1
Location
JAUMHM010000005.1:11478553-11484805[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00013 0.042 16.5 6.5 1 23 369 391 369 391 0.98
2 12 0.00053 0.17 14.6 3.5 1 23 405 427 405 427 0.97
3 12 0.0098 3.2 10.6 1.3 1 23 433 455 433 455 0.95
4 12 8.1e-05 0.027 17.1 1.8 1 23 462 484 462 484 0.99
5 12 0.0002 0.066 15.9 0.9 1 23 490 512 490 512 0.98
6 12 0.00095 0.31 13.8 4.0 1 23 518 540 518 540 0.97
7 12 5.9e-06 0.0019 20.7 2.6 1 23 546 568 546 568 0.97
8 12 0.042 14 8.6 1.5 1 20 574 593 574 596 0.85
9 12 5.8e-06 0.0019 20.8 4.1 1 23 603 625 603 625 0.97
10 12 4e-07 0.00013 24.4 1.2 1 23 631 653 631 653 0.99
11 12 0.00013 0.041 16.5 6.3 1 23 659 681 659 681 0.95
12 12 0.00048 0.16 14.7 4.5 1 23 688 710 688 710 0.95

Sequence Information

Coding Sequence
ATGCAAGATTTAGAAAAGGAGAGGCAAAAAGAAGATGATGAAAAGGTATTACTTACGCAAGATTTAgaaaagataaaacaaaaaggAGAAGATGGAAACGTATTACTTATGCAAGATTTAGAAAAGGAAAggcaagaagaagaagatgaaaatgtattacttatgcaagatttagaaaataaaaaacaagaagaaGATGAAAAGGTATTACTTACGCAAGAtttagaaaagaagaaacaagaaGAAGATGGAAAGGTATTACTTATGCAAggtttagaaaagaaaaaacaagaagaagGTGAAAAGTTATTACTTATGCAAGagttagaaaagaaaaaacaagaagagCAAAGTAAAAAGAATAGTACAGTTGAGGCGCAAAAAAGGGATGAGGCGCAGAGAAGGAATAATGCTTTACGAAGAGAACGGGTTAGAAAAATGCGTGAAGATCCTGTGAAATATGCTCTCCACCTTGCTAAAGAGCGAGAAATATATCATAGAAGAAGAAAAGAGGGAAGGTTGTTACTTATTCCAGATTTAGGAGAGAAAGAGCGAGAAGCGCTAAGAAAAAGGAGGCAAGAAGCTGGTAAAAGGTATCGTGAAAAAAAGAAGAtggaaagaatgaaagaaaaagaagaaaacggAAAACTTATGCAAGATTTAGGAAAGAAAAACCAAGAAGAGCAAAGTAAAAAGAATAGTACGGTTAAGGCGAAAAAAAGGGATAAGGCTAAAGAACAAGAAATATAtcacagaagaaaaaaagagggaaggcTGTTACTTATTCAAGATTTAGGAAAGGAAGAGCGAGAAGCTCGAAGAAAAAAGAACAAAGAAGCTGCTAGAAGATAccgtgaaaaaaaaaagatttcttctaTGAGTACTAATAACATCCCGTCTGAAATTTTACCAAAAGAGGAAGAAGCCTCATGGAACAGTATCTTCATCAAGTCTGAGCCACTCGAATACGAGTCAGAGGACGAAAAAGTGAACTTGAATGGGGAAAAGACCCAGTCAAATAATCTCTCTAACGAAGCCGACCATGATCTTATCAAAACTCAAGCACATACTTCTATATCacctataaaaattatgaaaaaactccACTATTGTCATCAATGCCAACGAGAGTATAAAACTGCACAAAGCCTAAAAAGGCACATAAAAACTCACGCTCTCGTGAAAGGCCCCAAAACTCAGCCAAAGAAGAAACATATATGTGAAATATGCAACAAAGGTTGTGCATCACCAAGCAAGCTTCAGTCCCACGTTCACACGCACCTACATATTAAGCCTTTCGAGTGCGATATTTGTAAAAACCGATTCAGAAGCTATTATACTATGAAATACCACGTAATTGCCCATATGGAACTTGGCGGACTTTACAAGTGTTCAGTTTGTGCAAAACGGTATACTAGATCCAACCGTTTAAAGGACCATATGCTTTCCCACTCGAAAGTTAAACCCTTTGAATGTGAAGTTTGTAAGAAGGcttatttaagaaagaatgatTTAAAGGTTCATATGTATACTCACGATGAGAGAAAAGcttttcattgtgaaatttgcTTCAAAGGCTTTAGCACGATGTCTTATCTAAAACTTCATAAAAAGCTTCACTCGGATGACTTTTCTCATGTGTGTAACGTTTGtggaaaaagattttataagataAGTTATCTTAAAATCCATATGAATCGCCACACGGGGGTAAAACCTTTCGAGTGCGAtgtttgtaaaaagaaatttccaagtcGAGCTTCTATGAAATGCCACGTAGTTGCTCATATGAAAGAAGGAAAATCCCACGAGTGTCCtgtctgtaaaaaatgttttagaaaagcATCCATGTTGAAGGAACATTTGCGACTCCACTCGGGAGTTAAACCTTACAAATGCAAAGTTTGCGAGAAGAGTTTTATGAGAAAAGGTGGTTTAACGCAACACATGCTGACTCACGATAAAAAAAGACCGTTTCTCTgtgacatttgccataaagattttaagacgCATGGTCatctaaaaattcatcaaaagatACATTCAAGCATTGTAGATTCGTTTCTTTGTGAAATTTGCCATAAAGGTTTCAAGAAACTTGGTCATCTCAAACTTCATAAAAAGGTACATTCGAAGGGCAATACAGATTCTCAGAAGGCGAAGGACGAAACTGTTAGTATTGTGAAGTCTGAAATTAGGAGTGAAATACAAGAAGAAGATATCAATTTGCAGGGCCAAGAGATGATTGTTCCTGAAAAGATGACtgaaagtgaagaaaataatcAAGATCAGACTTTAATAGGGGCAAAAACAGATTGTATTCTGAAGACTGAACTTAAGCGGGAAATATATGATGACGAGGATAAACATTTGCAATGCCAAAAAAGCAGAAACCTTATCACGAGTGGAAGTGAAAATTCTActtcattttctataaaaaaggaACCTTGTGATATAGTAGATTCAAATCCCGAAATcgaatttcaagatataaagATAGAACCTTAA
Protein Sequence
MQDLEKERQKEDDEKVLLTQDLEKIKQKGEDGNVLLMQDLEKERQEEEDENVLLMQDLENKKQEEDEKVLLTQDLEKKKQEEDGKVLLMQGLEKKKQEEGEKLLLMQELEKKKQEEQSKKNSTVEAQKRDEAQRRNNALRRERVRKMREDPVKYALHLAKEREIYHRRRKEGRLLLIPDLGEKEREALRKRRQEAGKRYREKKKMERMKEKEENGKLMQDLGKKNQEEQSKKNSTVKAKKRDKAKEQEIYHRRKKEGRLLLIQDLGKEEREARRKKNKEAARRYREKKKISSMSTNNIPSEILPKEEEASWNSIFIKSEPLEYESEDEKVNLNGEKTQSNNLSNEADHDLIKTQAHTSISPIKIMKKLHYCHQCQREYKTAQSLKRHIKTHALVKGPKTQPKKKHICEICNKGCASPSKLQSHVHTHLHIKPFECDICKNRFRSYYTMKYHVIAHMELGGLYKCSVCAKRYTRSNRLKDHMLSHSKVKPFECEVCKKAYLRKNDLKVHMYTHDERKAFHCEICFKGFSTMSYLKLHKKLHSDDFSHVCNVCGKRFYKISYLKIHMNRHTGVKPFECDVCKKKFPSRASMKCHVVAHMKEGKSHECPVCKKCFRKASMLKEHLRLHSGVKPYKCKVCEKSFMRKGGLTQHMLTHDKKRPFLCDICHKDFKTHGHLKIHQKIHSSIVDSFLCEICHKGFKKLGHLKLHKKVHSKGNTDSQKAKDETVSIVKSEIRSEIQEEDINLQGQEMIVPEKMTESEENNQDQTLIGAKTDCILKTELKREIYDDEDKHLQCQKSRNLITSGSENSTSFSIKKEPCDIVDSNPEIEFQDIKIEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-