Most000784.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- -
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000001.1:10150037-10155620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0067 2.2 11.1 0.2 1 20 29 48 29 50 0.94 2 18 0.51 1.7e+02 5.2 2.0 1 23 62 85 62 85 0.82 3 18 0.0034 1.1 12.1 1.2 2 23 91 112 90 112 0.95 4 18 0.0021 0.68 12.7 1.1 1 23 156 178 156 178 0.97 5 18 0.00048 0.16 14.7 0.1 1 23 184 206 184 206 0.97 6 18 1.3e-07 4.3e-05 25.9 0.6 2 23 243 265 243 265 0.96 7 18 0.0025 0.83 12.4 0.4 3 23 273 294 271 294 0.95 8 18 2.3e-05 0.0075 18.9 0.2 2 23 302 324 301 324 0.96 9 18 0.0021 0.69 12.7 0.4 1 23 333 355 333 355 0.93 10 18 0.029 9.5 9.1 0.1 2 19 411 428 410 429 0.95 11 18 0.0012 0.39 13.5 0.0 2 23 450 471 449 471 0.96 12 18 0.0067 2.2 11.1 1.2 1 23 489 511 489 511 0.97 13 18 0.00011 0.037 16.7 0.2 2 20 529 547 529 549 0.93 14 18 0.07 23 7.9 0.7 2 23 579 601 578 601 0.90 15 18 0.00014 0.046 16.4 0.4 2 23 626 648 625 648 0.92 16 18 0.0018 0.6 12.9 1.9 1 23 654 678 654 678 0.95 17 18 0.078 25 7.8 2.7 1 23 683 706 683 706 0.92 18 18 0.93 3e+02 4.4 0.5 2 23 737 759 736 759 0.93
Sequence Information
- Coding Sequence
- ATGGTTTCTTCAACTCCGAATTTTTCGCGACAACCTGATGCTCCAATTCGGTCTCCATACGGAAATGGTGATCCCGCCTGTAATCACGAGTGTGATTTATGCGGAATGATCTACAGATACAAACCAAATATGATCAAGCATCGTGAATTGTGTGCTAGTTTGCCACCAGAAGGGAGGACTTCTTACAAGTGTGTCGACTGTGGAATGACGTTCCTTGTCTTTAACAAATTCCACAGCCACGTTACGACTGAGCATAGAAAGAAGGAGTTGAAGTGTCCCAAATGTGCTGCTAAATTCCGGTCACCGAGTGACTACCTCACGCATCACGAATATCACCGAATGGGAAAGAAGAATAAGGAACATCCTTCTGCAAACTGGAATTACAAAAATCAAGCTGAAGTAGAGGAAGAAGCAGAAGTAGGAGTAGGAGTACAAGAAAATCTGCAACATCAACAGAAACGAAGGTTCAGTTGTACTCTCTGCAGTCAGCATTTCCCCTCACGAGTCGAACTGGCCGAACATCGTAATTTGCACCTAAAAGTTAAGATCTACTCGTGTGTGATTTGCCGCAGCATGTTTAGTAGCGCTGGAGCTTTGGAGATTCATATGAAAGATCATGGAATTGATGATCCAAATGAGCGAACTGCCAACAGTTCTTGTATGGAATACGGACAGGAGACACTAAATACTTCAACTAAGAACTCAAATCCTCCACTTCGCAAAAACGAATGTTTCGAATGTGGAAAGACATTTTCCAACTACGCGAATCTGCGAAGACACATCAGAAACGCACACGAGGACGTGCGACGCATTGACTGTTCGGAGTGTATTAGAACTTTCAAAAACAAGGAGTCCTACGAAGATCATCTTCGAAACGCACACAATCCTGAAAAAACTGTCTTGCAGTGTCCTCAGTGTCCAAAAACGTTCGTCTTTCAAGCGAATTTGGATCTCCATCGTCGCAATGTGCACATCAACAAATCAGAACCCACTAATCATGAGTGCGATGTGTGCGGTAAATCATTCCTGGAGGAATCTTCTCTGAAAATCCATCGTGGGTGGCACAATCGCGCCAATTCGCGTCTTAGCCTCGAAAACTATGAGAGAGATAGACTCGCATTGCCGAATCCTGGTAGTTCAAAACCAGCGAAGGCAAGAAAGTCTTTTCCGAACGTTCCTCTAGTTCAACAGCAATTGCAACTACAACAGCAGCAGCAATTACCCAAGCTTCAATGTCAGGTATGCGACGACAAATTCGTCGACGTTTCCGAACTGAGAAAGCACGTTTGGGATGTTCACTGCGCTCGCGCAGCCAAAGTCGAAAAACCATTCGTTGTCAAAGACCTTCAATGCGAACTCTGCACCAACATCTTTCCTGATCAACAAAGTCTCGAAGCTCACATGGAGTGGCACGAGCGCAACCCGATTTTGAGCGACTACACTGGAAATACCAATACCAATTCCTACCGGTGTGACGTTTGCGACAAGTATTACAGTTCACTCAAGATTCTCGCGAAGCATAAAAAGTTACACAAGCAGGTTTCACAGCCTTTGAGATTACAATCACTCCCAATAAAAAGGCCCTCTTGCAACGTTTGCGGCAGGTCCTTCACTGCCGAGTCTTCACTCAAAAGGCACAAGGCGATGTCACCAGAATGCCAGTCTTATTATTCAGGAAGATTTACAGAGGAACCAAGAAACGATCAAGattccatttttaagaaaaaacctGTAACCTGCCACATTTGCAAGACTGTTTTCCCGAGTATGAGCATTTTGTATCAGCACAAACAGTTGGCAcataaattgtgttttaacaaagACAGAAAATCACCAAGCAATGAATGCGTCCCATTGGCGAGTGGCGAAGGAGTTTCTTGCAATGTTTGCGGTAAGCAATTCCCCGGCCTCTCCAATCTCAAGCAGCACTTCACGATTAAGCACAAAAACGTTAGTCAGCATCCATGCACGATTGCtaattgcaaaatgattttctccACGTCGCACGCCCTTAAAAATCATGAACTCACGCACTCAAACATGATATACAGTTGCAGTCTCTGCGAAAGGCACTTTTTCCACAAGGGGGCGATCATCAAACACGTCTTCAACGCCCACAAGGCCATATACCAAGGAACCGGAGACAAGGAATCTCTTTTCAAGGAAACCGATTTGAGTACATATGTCGTAAAAGGTGCAACTGGGACAGTTTGTCCGCGATGCAGAATCAAGTATCCGAATATTAAGGCTATGAAGATTCACTACTTCAAATTCCATGAGACATTCGCTTAA
- Protein Sequence
- MVSSTPNFSRQPDAPIRSPYGNGDPACNHECDLCGMIYRYKPNMIKHRELCASLPPEGRTSYKCVDCGMTFLVFNKFHSHVTTEHRKKELKCPKCAAKFRSPSDYLTHHEYHRMGKKNKEHPSANWNYKNQAEVEEEAEVGVGVQENLQHQQKRRFSCTLCSQHFPSRVELAEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPNERTANSSCMEYGQETLNTSTKNSNPPLRKNECFECGKTFSNYANLRRHIRNAHEDVRRIDCSECIRTFKNKESYEDHLRNAHNPEKTVLQCPQCPKTFVFQANLDLHRRNVHINKSEPTNHECDVCGKSFLEESSLKIHRGWHNRANSRLSLENYERDRLALPNPGSSKPAKARKSFPNVPLVQQQLQLQQQQQLPKLQCQVCDDKFVDVSELRKHVWDVHCARAAKVEKPFVVKDLQCELCTNIFPDQQSLEAHMEWHERNPILSDYTGNTNTNSYRCDVCDKYYSSLKILAKHKKLHKQVSQPLRLQSLPIKRPSCNVCGRSFTAESSLKRHKAMSPECQSYYSGRFTEEPRNDQDSIFKKKPVTCHICKTVFPSMSILYQHKQLAHKLCFNKDRKSPSNECVPLASGEGVSCNVCGKQFPGLSNLKQHFTIKHKNVSQHPCTIANCKMIFSTSHALKNHELTHSNMIYSCSLCERHFFHKGAIIKHVFNAHKAIYQGTGDKESLFKETDLSTYVVKGATGTVCPRCRIKYPNIKAMKIHYFKFHETFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -