Most004640.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- -
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000005.1:10941043-10946562[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.21 70 6.4 0.1 2 21 10 29 9 30 0.93 2 21 0.066 21 8.0 2.0 1 23 37 60 37 60 0.94 3 21 2.2e-06 0.00072 22.1 1.3 1 23 224 247 224 247 0.97 4 21 0.0023 0.76 12.6 4.0 1 23 253 276 253 276 0.96 5 21 2.1e-05 0.0069 19.0 0.7 2 23 314 336 314 336 0.95 6 21 0.00077 0.25 14.1 3.3 1 23 342 365 342 365 0.98 7 21 1.7e-05 0.0054 19.3 1.6 1 23 444 467 444 467 0.97 8 21 0.0024 0.78 12.5 6.9 1 23 473 496 473 496 0.96 9 21 0.0028 0.91 12.3 1.6 3 23 535 556 534 556 0.95 10 21 0.00032 0.1 15.3 0.8 1 23 562 585 562 585 0.98 11 21 0.0024 0.78 12.5 4.3 2 23 655 677 654 677 0.89 12 21 0.0049 1.6 11.5 3.6 1 23 683 706 683 706 0.96 13 21 0.00035 0.11 15.2 0.4 1 23 754 777 754 777 0.95 14 21 7.8e-06 0.0025 20.4 1.3 1 23 783 806 783 806 0.98 15 21 0.024 7.8 9.4 0.8 1 23 819 842 819 842 0.92 16 21 5.1e-06 0.0016 20.9 1.1 1 23 848 871 848 871 0.96 17 21 0.00042 0.14 14.9 4.3 3 23 878 899 877 899 0.96 18 21 0.00011 0.034 16.8 5.2 1 23 904 926 904 926 0.98 19 21 0.0062 2 11.2 1.5 2 21 933 952 932 955 0.94 20 21 3.4e-05 0.011 18.4 0.9 1 23 961 983 961 983 0.98 21 21 4.6e-05 0.015 17.9 2.8 2 23 990 1012 989 1012 0.95
Sequence Information
- Coding Sequence
- ATGCGATTCCATCAAGAGCCACCGATAGTTTGTGATGCTTGTGGAAAAACTTACTTGAACAGTCGCTATCTTTATTTGCATCAAAGATATGCTCCTTACAAAACTGCATTTCTTTGCCATCTTTGCAAACGATTTATGGCTACTCAAGTAAATCTCGATCAACACATAAGACAGCAACATGGTCAGAAGGAGAGAGTGATTTGTGATGAGTGTGGAGAACCAAACAGAGATCCGCCACCTCTTAGCATACTGGAGAAATTTCTTACACGGCCTCTCGGAAACACTGTAGCACAAGcaagaaaaaacagaaaatcaaaCTTGGCAAAATCTTCAACGAACGTTCATCAGGCATCTACAACTACATTTAGTATTGTCTCTACTTTAGTTCAAACGTCAAAAGTGATTCCAAATTTCGTACTTGCGAATATTAATCCGAACGAGtctccaaaaattataatgagCAATACGACTAAACAAGTTGAAGAATCGGATCCTCTTTTACTCAAAACTTTGGAACAGCCCATCAATAGTAGAATTTCTATTAAAGCGGAACCACTCAGCATCATTGGAAGCAGTAAATCTTCAGAAAACGAGATAAGAACAcacataaaaagtgaaaaatccaACCGGCTCTCGGTAGAAAATATGGGGGTACTGATATCAAGCATGTACAAGTGTAAAGGTTGCGGTAAATTATTTAAGCGCAAGGAGATGTTGAGGGCTCATTACATTCGTTTACATACAGATATTTATCAATTTCCTTGTGAAGAATGTGGTGAGaagttcaagtttttttacTATCTCAGTCAACACAAAAGGCTATGTCATCCAAAAGAAAAATCAGCAGAAACTTCATCTTCTGGCATAACTTCAAATACAGATACACCAACgcagaagaaaataaaactgagcTATAAGGATTTTGATGCGAGTGACCgagtttgtaaaatttgtaataaggAATTCCCCAGTCCTTCTGCCCTAAGGAACCATCATATTCGAATGCAcacaaaggaattcaaatatcCCTGCGATATGTGTCCTAAAAAGTTTAAGCtttgtaaagatttcaacgatCACAGAAGGCGAGTTCATCCAAACCAATTATCAAGAGAAACAAACAATCCGAAGAAAAAAGTTCCGGAACCGGATCCGCTCTCAATCAATCATTTGGAAGAGCCCGTCCATgctgaaaattctattaaagtAGAACCACTTAACATCATTCAAAGCAGTGAATCTTCACAAAACGAGATGAAaacacaaatgaaaaatgaaaaatcggaCCGACTGTCTATAGAAAATATGGGTGTAGAGATATCGACCATGTACAAGTGTAAAGGTTGCGGTAAGTTCTTTAAGCGCAAAGATATATTAAAGGCGCATTACATTCGTTTACACACAGATATTTATCGGTTTCCTTGTGAAAAATGTGGCGAGAAATTTAAGTTCTTTTACCATCTCAATCAACACAAAAGGCTGTGTCATCCAGAAGAAAACCCAGCAGAAACTTCGTCTTCTGGAAAAACTTCAAGTAAAGAGTTAACAAcggagaagaaaaaaagactAAGATTAAAGACTTTTGATCCGAGTGAccgaatttgtaaaatttgtaataaagaaTTCCCCAATCCTTCTTCCCGAAAGTACCATCATATTCGAATGCAcacaaaggattttatataTCCCTGCGGAATATGTCCTAAACAGTTTAAGCTTCGTAAAGATTTCAGCGATCACAGAAGGCGAGTTCATCCAAAGGAAACATTAAcagaaactcaagaaaattggattaaaagagTACAAGAATCTAGAGAAATTACTAAAGACGTTGTATTAATTAAAGAGGATTCAATCGAAATCGTAGAACACTCCGTGGCTACGGAAGATGAGAATTCAGTAGAAGCTTTACCATCACAGAAGAAAGAAACACAAAGAggtgagaaattatttcagGACCTGACTTGTCATATTTGTGATAAGAAGTTCCAGAGATTACATGCTCTGAAAAACCATAATGTTCGTTTTCACACAGAAGGATTTGAACATACCTGCGAATTgtgtttcaaacaattcaagatTCTTAAAGATCTCCAAAAGCACATAAAACTATTCCATCTAAACGAGAGCTCAAGAGATACCCAACCGAATTCGGAAAAAGGAAAACGAAAGATTAAAGAAGAACAAGAGTTTACAGAAACTGGAGCTGAAACTTCTTCATCTAGTAAAGTTGAAAAGGTcccaaaaaaaagagaattatttatttgtgaagCTTGTGGTAGGGAATTTGTGCGCAAGGCGAGTTTGCAGATGCATTTTAATCGTACGCACACGCAAGAATGTAATTATACTTGTGCGGAATGTGGAAAAGAATTTAGGATCAAGAAAGACCTCTGTGCACACTTGAGGCGAATACATCAACAAGGAACTGGAGGACGAGAAAAAACGGgtgaatttgtttgtaacattTGTGGCATCAAAGTTTTGCGTAAAGGTACACTAACGATCCATCATCTTCGTAAGCACACTCATcagtttaaattttcttgtaaagTGTGCGGCAAAAACTTCAAGGTTCAAGGAGATCTCACTACTCATACGAGGCTTCGTCATTTGGAACCACCAGCAATTTGTGAAGTTTGCGGCAAGACTTGCAAGAACAAACATTCCCTTTATGTTCATCAAAAATATAGCCATTTCCAAACTAAATTCCGGTGTCCCTATTGCACCAGATGTTATGCTTCTCAAAAAAATCTCGACCATCATCTTATGTCCCATGAAAATAAGGAAAGACTTACTTGCTCAGAATGTAGCAATACTTTTGCGAGCAAAACTACTTTGGTGAATCACATTCGATGTGTGCATGCTCAGGAGAAGGCGTTTTCTTGCCAGGTTTGCGGAAAATTGTTCCCTTCGTATTCTCGATTGAGGAAGCATCTAATCACTCATTCGGGCAAACGACTTTGTATTTGTGAAATATGTGGGAAACAATTTAAGCAGAAACCTAGCttgattagtcacagaaaaaaaaagcaTCCTGGTGAACACCCACCGCTGCCTATTATTCGATTGGATAATGTCCTTAGCGAATTCATCCAGAAATAA
- Protein Sequence
- MRFHQEPPIVCDACGKTYLNSRYLYLHQRYAPYKTAFLCHLCKRFMATQVNLDQHIRQQHGQKERVICDECGEPNRDPPPLSILEKFLTRPLGNTVAQARKNRKSNLAKSSTNVHQASTTTFSIVSTLVQTSKVIPNFVLANINPNESPKIIMSNTTKQVEESDPLLLKTLEQPINSRISIKAEPLSIIGSSKSSENEIRTHIKSEKSNRLSVENMGVLISSMYKCKGCGKLFKRKEMLRAHYIRLHTDIYQFPCEECGEKFKFFYYLSQHKRLCHPKEKSAETSSSGITSNTDTPTQKKIKLSYKDFDASDRVCKICNKEFPSPSALRNHHIRMHTKEFKYPCDMCPKKFKLCKDFNDHRRRVHPNQLSRETNNPKKKVPEPDPLSINHLEEPVHAENSIKVEPLNIIQSSESSQNEMKTQMKNEKSDRLSIENMGVEISTMYKCKGCGKFFKRKDILKAHYIRLHTDIYRFPCEKCGEKFKFFYHLNQHKRLCHPEENPAETSSSGKTSSKELTTEKKKRLRLKTFDPSDRICKICNKEFPNPSSRKYHHIRMHTKDFIYPCGICPKQFKLRKDFSDHRRRVHPKETLTETQENWIKRVQESREITKDVVLIKEDSIEIVEHSVATEDENSVEALPSQKKETQRGEKLFQDLTCHICDKKFQRLHALKNHNVRFHTEGFEHTCELCFKQFKILKDLQKHIKLFHLNESSRDTQPNSEKGKRKIKEEQEFTETGAETSSSSKVEKVPKKRELFICEACGREFVRKASLQMHFNRTHTQECNYTCAECGKEFRIKKDLCAHLRRIHQQGTGGREKTGEFVCNICGIKVLRKGTLTIHHLRKHTHQFKFSCKVCGKNFKVQGDLTTHTRLRHLEPPAICEVCGKTCKNKHSLYVHQKYSHFQTKFRCPYCTRCYASQKNLDHHLMSHENKERLTCSECSNTFASKTTLVNHIRCVHAQEKAFSCQVCGKLFPSYSRLRKHLITHSGKRLCICEICGKQFKQKPSLISHRKKKHPGEHPPLPIIRLDNVLSEFIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -