Most005203.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- -
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000005.1:23855917-23858773[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.1e-05 0.013 18.1 2.5 1 23 78 100 78 100 0.97 2 17 2.9e-06 0.00094 21.7 0.4 2 23 107 128 106 128 0.97 3 17 0.0025 0.82 12.5 1.1 2 23 134 155 133 155 0.97 4 17 2.5e-05 0.0081 18.8 3.1 1 23 189 211 189 211 0.98 5 17 0.001 0.34 13.7 0.0 2 23 218 239 217 239 0.96 6 17 4.3e-05 0.014 18.0 0.3 1 23 245 267 245 267 0.97 7 17 4.6e-05 0.015 17.9 1.6 1 21 274 294 274 296 0.96 8 17 3.1e-05 0.01 18.5 1.1 1 23 302 324 302 324 0.96 9 17 0.00018 0.059 16.1 1.7 1 23 330 352 330 352 0.98 10 17 0.00014 0.045 16.4 1.7 1 23 358 380 358 380 0.98 11 17 0.0032 1 12.1 0.7 1 23 386 408 386 408 0.98 12 17 0.13 42 7.1 0.7 1 23 415 437 415 437 0.95 13 17 7.7e-05 0.025 17.2 0.7 1 23 443 465 443 465 0.97 14 17 1.6e-06 0.00051 22.6 1.7 1 23 471 493 471 493 0.98 15 17 0.00028 0.09 15.5 0.6 2 23 556 577 555 577 0.94 16 17 3.9e-05 0.013 18.2 0.3 1 23 584 606 584 606 0.97 17 17 0.002 0.65 12.8 2.6 3 23 621 641 619 641 0.97
Sequence Information
- Coding Sequence
- ATGGATATCGAaagtaataatacaaaaatagagttaatttcaaaagatgaagTTCCGTGGAACAGCGTCTTCATTAAATCTGAGCCTGTCGAGTATGAGTTAAATGACGAAGACAATGCCAGAGAAGTACAGAACAAGCTGAAAAATCTCTCTGATGACATCAACAATGAGCTTTCAAAAACTGAGGCATacactttcaataaattacctataattaaacttgaaaaattacattcttGTAATAAATGTCAACAAGTATTCGAGACCACTGACAGTTTAAAGGTTCATTTGCAAACCCACATAAAAGTTAAACCCCTCTCTTGTGACGTTTGCTCCAAAGGTTATTCGAGGAAGCGTGACCTAATAAATCATATGAGGGTTCACGATGAATCTGCCCTCAGATGTGACATTTGCAATCAAGTGTTTCTTAGGCCATGTGCTCTTGTAAGTCATAAGCGTACTCATGTTGGGCAGCCCTTGGATATTAAGGAGAAATTCGGTACAAGTATTTCTGTGAAATCGAATTTACCTCGTAAAGAACCTGACAACGAAAATAGTAAGCCTTTTTCTTGTGACATTTGCTTCAAAAGCTTTGTGAAAAGGTCTTATTTAAACTTACACAGAAAGAGACACTGGTTTATAAGACAAATTCCGTGTGTAATTTGTGAAAGAAGATTTCTTACGAATGTTGAGCTTATTGCTCACATGCAAACTCACAAAGGAGAAAAGCCTTACAAATGCAACATTTGTAAGGCAACATTTTCTgccaaagaaaagttgaaatggCACATAATTGCTCATATGGATGATACGGGACCTTATGTGTGTCAAATATGCGGAAGAGGTTTTCAGAGAGCCTATCTTTTGAAGAGCCATATTAGATGTCACTCAGAACATAAGCCCTTCCACTGTCCTATTTGTGAATACGGATTTACCAGACGGAACGAACTAGCCTCACACATGCTTTTTCACGAAAACGAAAAAACTTTCGAGTGTGAGGTTTGCTCTAAAACTTTTATAACGATGACCTTTCTGAAGCagcataaaaaagttcatttagaGAAAATGCCCTACACGTGTGGAATTTGTGAGagaagatttattaaaaaatcggtCTTCAATATGCATATGCGTTTTCATGCTGGAAGAATGCCTTTCGAGTGCGACTTTTGTAAGCGAAAATTTGCTATCCGTTACAGGCTTGAAGAGCACATAATTTCTCACATCGGAGATGACGGAGTGCACAAGTGTGAAATTTGTGGAGCAGGTTTTTTGTTATCCAAGATTTTGAAGAGGCACCTGcgattacatttaaattttaagcccttcgaatgtcaacaatgcaagaagaacttttcaaaaaaggctGATTTAGCGGAACATGTACTCCAGCATTTAAACAGCAAACCTTTTGTTTGTGACGTCTGTGGCAAAGGTTTTACGAGAAAGTTTTATCTGAACTTACACAGAAAAAGACATTGGCAATGTCCCAGTAAGCCCACAGAGACCATTCAGCCCACAGAGACCATTCAGCCCACAGAGACCATTCAGCCCACAGAGACCATTCAGCCCACAGAGCCCATTCAGCGTATAATTCCTGAAGAAACTTTACCCACTCAACAGATAGATACTTCTACACTTagtcaaactgaaaaaaaaccttTAGAATGTGacatttgtaagaaaaaatttacagataGTTACAGGATGAAATTGCACATGGTTGCTCATACGGGAGATGGCGGACCGCACAAGTGCTCAGTTTGTGGAAAAGGTTTTTCGATACCCTACGTTTTACAAATCCACATGCAAGGCCACAAAAACAGAAAACCCTGTGATACTGTAAAAAAGCCTTTTGGGTGCGATGTTTGTAAGAAAAGGTTTAGGTTCGACAAGAATTTAAAATCCCACAAATTGAGTCATATGAAGGCTAAACCCAAAAAGAGTCATGATGGAAAGATAGAATTCGATGAATCAGTTTCTCGCTCGGTGCGTTTAAAGTCTGAAATCAAAAGTGAAGTGCAGGATGAAAAGGATAACAATTGGAAGGGTGgaaaaacaaactttaaaaaaacgcCTGAAAGTGGAAACTTTATCTTCCATTCTGTAAAAGAGGAACCTTGTGATCCATTAGATTTAGGTCACGAAGTAGACGTCGAAGATTTAAAGATAAAAgttgaagtaaattaa
- Protein Sequence
- MDIESNNTKIELISKDEVPWNSVFIKSEPVEYELNDEDNAREVQNKLKNLSDDINNELSKTEAYTFNKLPIIKLEKLHSCNKCQQVFETTDSLKVHLQTHIKVKPLSCDVCSKGYSRKRDLINHMRVHDESALRCDICNQVFLRPCALVSHKRTHVGQPLDIKEKFGTSISVKSNLPRKEPDNENSKPFSCDICFKSFVKRSYLNLHRKRHWFIRQIPCVICERRFLTNVELIAHMQTHKGEKPYKCNICKATFSAKEKLKWHIIAHMDDTGPYVCQICGRGFQRAYLLKSHIRCHSEHKPFHCPICEYGFTRRNELASHMLFHENEKTFECEVCSKTFITMTFLKQHKKVHLEKMPYTCGICERRFIKKSVFNMHMRFHAGRMPFECDFCKRKFAIRYRLEEHIISHIGDDGVHKCEICGAGFLLSKILKRHLRLHLNFKPFECQQCKKNFSKKADLAEHVLQHLNSKPFVCDVCGKGFTRKFYLNLHRKRHWQCPSKPTETIQPTETIQPTETIQPTETIQPTEPIQRIIPEETLPTQQIDTSTLSQTEKKPLECDICKKKFTDSYRMKLHMVAHTGDGGPHKCSVCGKGFSIPYVLQIHMQGHKNRKPCDTVKKPFGCDVCKKRFRFDKNLKSHKLSHMKAKPKKSHDGKIEFDESVSRSVRLKSEIKSEVQDEKDNNWKGGKTNFKKTPESGNFIFHSVKEEPCDPLDLGHEVDVEDLKIKVEVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -