Basic Information

Insect: Melikaiella ostensackeni
Gene Symbol: -
Assembly: GCA_032362435.1
Location: JAUMHM010000016.1:30682841-30684725[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.24 78 6.2 0.5 2 23 110 131 109 131 0.96

2 15 0.011 3.5 10.5 1.1 3 23 137 157 136 157 0.97

3 15 4.9e-07 0.00016 24.1 3.5 1 23 163 185 163 185 0.97

4 15 2e-05 0.0065 19.1 0.1 1 23 219 241 219 241 0.98

5 15 0.00014 0.045 16.4 1.3 1 23 247 269 247 269 0.98

6 15 6.3e-06 0.0021 20.6 2.4 1 23 275 297 275 297 0.96

7 15 8.8e-07 0.00029 23.3 1.7 1 23 303 325 303 325 0.95

8 15 3.6e-05 0.012 18.3 0.6 1 23 331 353 331 353 0.98

9 15 2.2e-05 0.0072 18.9 7.2 1 23 359 381 359 381 0.97

10 15 2.1e-07 6.9e-05 25.3 0.8 1 23 386 408 386 408 0.97

11 15 0.00012 0.04 16.6 1.4 1 23 414 436 414 436 0.97

12 15 2e-06 0.00066 22.2 5.1 1 23 442 464 442 464 0.96

13 15 2.8e-06 0.00091 21.8 0.8 1 23 470 492 470 492 0.98

14 15 1.4e-05 0.0046 19.5 0.5 1 23 498 520 498 520 0.97

15 15 4.6e-05 0.015 17.9 1.6 3 23 528 549 527 549 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.24	78	6.2	0.5	2	23	110	131	109	131	0.96
2	15	0.011	3.5	10.5	1.1	3	23	137	157	136	157	0.97
3	15	4.9e-07	0.00016	24.1	3.5	1	23	163	185	163	185	0.97
4	15	2e-05	0.0065	19.1	0.1	1	23	219	241	219	241	0.98
5	15	0.00014	0.045	16.4	1.3	1	23	247	269	247	269	0.98
6	15	6.3e-06	0.0021	20.6	2.4	1	23	275	297	275	297	0.96
7	15	8.8e-07	0.00029	23.3	1.7	1	23	303	325	303	325	0.95
8	15	3.6e-05	0.012	18.3	0.6	1	23	331	353	331	353	0.98
9	15	2.2e-05	0.0072	18.9	7.2	1	23	359	381	359	381	0.97
10	15	2.1e-07	6.9e-05	25.3	0.8	1	23	386	408	386	408	0.97
11	15	0.00012	0.04	16.6	1.4	1	23	414	436	414	436	0.97
12	15	2e-06	0.00066	22.2	5.1	1	23	442	464	442	464	0.96
13	15	2.8e-06	0.00091	21.8	0.8	1	23	470	492	470	492	0.98
14	15	1.4e-05	0.0046	19.5	0.5	1	23	498	520	498	520	0.97
15	15	4.6e-05	0.015	17.9	1.6	3	23	528	549	527	549	0.94

Sequence Information

Coding Sequence: atgaaagACAAATTCATGGACAAAATGGAGGCAACTGGAAAATCTGATTCTGGCTTCATGGAGGACATTTGCTCGGCCACTTTTGAAAAGGCGCTGTTATCTATCGGGAATCATGAAATGGACTTTCATGAGATGgTTGAATTCGAAGGAGAGACGAGTACCCATCAAAATTGGTTGACACTAAACGCAAATGTCTGCGACAAGCAAGACGGATCCCTTCAGAGATGTCTATTAAGCGTAGGTGTCGGCTCCATAATCCAACAAGATGTCCTGGAAAAACCACCATTTCTGCAAGCCAGTCCTCAGaagcaaaaatttgcaaaagtcCAATGCTCCATCTGTAAAAAATGGTTTCTAAACAACGACTCTATGGTAACTCATCTAAAACTCCACTGCAGTGGAAATTGCTGCCAAGTCTGCGAAGAAAACTTTCTCGATGCCTCGACTCTATACACTCATATGTTAACCCACGTGGGGATGAATCTCTTTGACTGCaacatttgtcaaaaaaaattctcctacaAAAAAAGTCTCCGAAATCACATGCAGACTCACTCGCTcgaaaaggaatttaaaaaccAGGAAATCCAGGAAGAAGTCTACCATGAGAAATTGAATTCCACCCCGAGTTTAAATTCCATCGAAAAAGGGCGCTTTTCCTGTAATCTTTGCGAGGCTTCCTTCAGAGAATTGGGGAATTTAAATCGTCACATTCTGATTCACACtgagaaaaagatttacaaatgtGTCGTTTGTTTCGCTTCTTTCAGGCAAAAGGGCAAGCTGAATCTCCACATGACTTATCACACCGGGAGCAAAcaatttcaatgttcaatgtgCCACAGATCTTTCGCCCAGAAGAATGCTTTGAATAATCACATGTTTGCTCACAGTCAAGAAAAACCTCATGCTTGTAATATTTGTGACAAGACTTACAAGAGAAAATCCGAATTGATACGGCACTCTATGGTTCATACAGGGGAGAGACCTTATGAATGCAAAGAATGTCTAATGACCTTTAGAGAAAAGGCGAAACTGAATTCTCACATGTTGGTGCACACTGGTGAAAAACCTCACGAGTGTCACATTTGTCACAAGGCTTGTGCGAGAAAATCTGATTTAAATAGTCATATGCTCTCTCACACTGGGGGACAGTATGACTGTACAATCTGCGAAAAGATTTTTACGAGAAAGTCGGATTTAAACAGACACACTCTGATTCACACGGGAGAGAAACCTTTTGCTTGTGAACATTGCAATATGGCTTTTAGAGAAAAGACGAGACTGAATTCCCATATGCTTATTCACACTGAAGACAAGAGACACGCTTGTCACATTTGCCAAAAGTCGTTTAAGGAAAAGGCGATGCTGAAAAAGCACATGCAGACTCACATGGGCGATCGACCTTACGAATGTTTCGTGTGCCAAAAAACTTTTGCCCAGAAGACGACGTTGAATAGTCATATTTTAATACATGAGGGCGAGTCTTGCTATGAATGTAGTACTTGTAATGAGATTTTTAGAGATAGATTTGCGTTGAAAAGGCATCTACTTGCACATGCTGGGGATAAATTTAATGATTGTCCGATTTGCTTGAAGAAATTTACGCACAGGTCGGCTTTGAATAATCATATTACTAATTCTCATAGTTCCTGA
Protein Sequence: MKDKFMDKMEATGKSDSGFMEDICSATFEKALLSIGNHEMDFHEMVEFEGETSTHQNWLTLNANVCDKQDGSLQRCLLSVGVGSIIQQDVLEKPPFLQASPQKQKFAKVQCSICKKWFLNNDSMVTHLKLHCSGNCCQVCEENFLDASTLYTHMLTHVGMNLFDCNICQKKFSYKKSLRNHMQTHSLEKEFKNQEIQEEVYHEKLNSTPSLNSIEKGRFSCNLCEASFRELGNLNRHILIHTEKKIYKCVVCFASFRQKGKLNLHMTYHTGSKQFQCSMCHRSFAQKNALNNHMFAHSQEKPHACNICDKTYKRKSELIRHSMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCTICEKIFTRKSDLNRHTLIHTGEKPFACEHCNMAFREKTRLNSHMLIHTEDKRHACHICQKSFKEKAMLKKHMQTHMGDRPYECFVCQKTFAQKTTLNSHILIHEGESCYECSTCNEIFRDRFALKRHLLAHAGDKFNDCPICLKKFTHRSALNNHITNSHSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01389646;
90% Identity: -
80% Identity: -