Most029407.2
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- -
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000083.1:39496270-39505993[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-05 0.026 16.5 0.0 3 38 167 202 165 208 0.86 2 4 1.7e-10 1.7e-07 33.0 0.0 5 39 219 252 216 257 0.85 3 4 0.0029 3 9.9 0.0 6 34 272 299 269 305 0.86 4 4 5.1e-13 5.2e-10 41.1 0.1 5 42 331 368 330 370 0.95
Sequence Information
- Coding Sequence
- ATGTCTGAGGTTAACAACAGAGAAGCTATTACTGAAAGCTACTCGTTTACATGGAGGGATTACCAGAATCATTTATCCGGAGTTGTTCGCCAGCTCCTCGAAGAGGAATTCATGGTGGATATTACATTGTCTGTAGCTGGGGAACGCATTCATGCTCATCGCATTGTTCTTTGCGCTTGCAGCACTTTATTCAAAgaactTCTTAGAGAAGCTCATGTTcctgaagaaaatataaaaaatcttttggaagcagcacgttttctaaaaataactgGTTTGATGGAGtaTGATGTTAACGAGTCAAGCGTAAAATCAAAAGActcaaatgaagaaaatggtGATTCATTCGCAGAATTAAACGAAATGGAAGAagtatttgatattttagaaCAACCTTACGATGACACAAACGAGCAATCGGAACAGAGTCCAACAGAGGAAAGTTTTGgagtcaaaaaaagaaaacggcGTTTTCCTATGAAAAGAGAATATAGCGGAGATATGCTAGCCGCCGCTATTAATAATTTACGTGAGGGAAAGACTTTAATCGAAGCTTCTACCAAAAACAATGTCCCTCGTTCCACTTTGTATATGCGAGCTAAAGCATTAGGCATTCAATTGAATGCTTCAAGAAATGAATATCCTGCCGAGTGTATGAGGGCAGCTATAAATTCTGTTATTgGTGGATCGAGTTTACAGCAAGCATCAGAAATGTTTGGTATTCCAAAAACTGTACTCTGGCGACGAATGCAAAAAGAAGGCTACCATATATTTCGTTCCGAAATGAAGAGAAGTTACGGCTCTGATAAAAGAGAAGCTGCCGTGGAAGCTTTACAACGCGGGGAAAATCTCACGAAAGTTGCACAACAATATCAAaTACCAAAGACGACTCTATTTAGAGACAAGGCTCGCCTAGTCGACGAAGGAAAATTGCCTACCTCTTTctggaaaaaaaggaaaactgaaaacgaatcgataaaaaaatttcgactggAAGAAGCTGTTGCTGCCTGTAAAAGCGGAAAAATGTCTCAAGCAGCGGCTTCCGTATTGTATCATATTCCAAAAACTACGATATGGAGACGTTTGCAgcaacataattcaaaaattaaatcgaaaaaagtgtCTGTTCATCCTCTTTCGAGTGTGCAAGATGACGTCGAAAGCGATGCCCAATTTACATACTGCGAGGTCACTTCCGACATCCCAGTGACTTATACAATTGAAGATAATGGCATTTCCGGAGAGCAGCAAGTTATCGTTTTCACGCCTGAAGAGGTCGAAGAACTCAATTTGGATGCTCATACACAAATCATTATCAGTTCGgaTTCAAATCACGAATTCGTCACGAACTCCACCGTCGATGATGATTCGAATTATAATTCGAATAAAAGTTAA
- Protein Sequence
- MSEVNNREAITESYSFTWRDYQNHLSGVVRQLLEEEFMVDITLSVAGERIHAHRIVLCACSTLFKELLREAHVPEENIKNLLEAARFLKITGLMEYDVNESSVKSKDSNEENGDSFAELNEMEEVFDILEQPYDDTNEQSEQSPTEESFGVKKRKRRFPMKREYSGDMLAAAINNLREGKTLIEASTKNNVPRSTLYMRAKALGIQLNASRNEYPAECMRAAINSVIGGSSLQQASEMFGIPKTVLWRRMQKEGYHIFRSEMKRSYGSDKREAAVEALQRGENLTKVAQQYQIPKTTLFRDKARLVDEGKLPTSFWKKRKTENESIKKFRLEEAVAACKSGKMSQAAASVLYHIPKTTIWRRLQQHNSKIKSKKVSVHPLSSVQDDVESDAQFTYCEVTSDIPVTYTIEDNGISGEQQVIVFTPEEVEELNLDAHTQIIISSDSNHEFVTNSTVDDDSNYNSNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392906;
- 90% Identity
- iTF_00980303;
- 80% Identity
- iTF_00980303;