Mcra004995.1
Basic Information
- Insect
- Melieria crassipennis
- Gene Symbol
- -
- Assembly
- GCA_963668005.1
- Location
- OY764961.1:79780618-79811472[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.012 1.1 10.4 1.3 1 23 2064 2087 2064 2087 0.94 2 8 8.9e-05 0.0083 17.1 0.5 1 23 2092 2115 2092 2115 0.97 3 8 0.022 2.1 9.6 3.1 1 23 2322 2345 2322 2345 0.93 4 8 1.4e-05 0.0013 19.7 0.8 1 23 2353 2375 2353 2375 0.98 5 8 0.00015 0.014 16.4 1.1 1 23 2382 2405 2382 2405 0.97 6 8 0.00017 0.016 16.2 1.3 1 23 2411 2433 2411 2433 0.96 7 8 0.076 7.2 7.9 1.6 2 23 2439 2460 2438 2460 0.97 8 8 0.34 32 5.9 2.4 1 23 2466 2488 2466 2488 0.99
Sequence Information
- Coding Sequence
- aTGAATGTCGATGACGCACCTGCTGCGCCCAGTGTCGCTGCGCCACCGTCCGCAACGGCAGAACAATACCGCAGCGAGCACGCTGCCACGCCGCCGCCAACAGCCGACGCGGCTGAAACTACACAAGCGGCATGGGCGAACGAGTCCGATTGGTCGGTGAACATTCTGGACCTgtgtcgcagctgcggcaaacCCAATGCGACACTGCATGATCTCTTCGTCGAAGTTGAACGGGATGATGGCGGCGGGGACGGCGATATTGGTGACCTTGTCGCTGACAAACAAGACAACAGCGGAGAGAATCTGCCGCGCTTTGCGCCCACCGAAGCCGAAAATAGTGCCACGTCAGCAGCAGTGGACATGACAGCCGCAAATCTTGATATCAGCGCTTCCAAAATTGACGATAGCCTCACTGATGGCACCACCGATAACTTAGCAGCAACAGTAGCAGCCGCGCCAGCAGAGATACCAACCACGACACTCGCTGCCGCTACAGCAAGTGCCTCGGCAAAAGCCACTGCCCAAGGACAGAGCAACATGGAAAACATTTTGCAAGAAATGCAGATTTGGCAACTGCGGATTAAATCCAACGACGGCTTGCCGCAGCGCATCTGCCCCAAATGCACCGCACAATTCTACATCATTCACAAGTTCCGGCGCAAATGTCTGAAGGTGCAGATTCGGCTGCGCGCGCTGCACGAGGAGCGGTGCCTGGAggaggagcagcagcagctgctgcacgAGAAGGAGTCACCGCTGGAGTTGAATGTGCCGCCTGCCTTGGATATTGGCAATGATTTAATTAACGACAATTACGGCCAGCCATTGTCTGAGGCGGAGCTGTTCGAGTCGGCCGCATGGAACGAGACGGATGCACCATTGCTGGACAGTGATGCCTCCAAAACGGGTCTGGAACCGGAGCCGGAATTAGAGGTGGAGGCTGAGGCTGAGACAGAAGTGGAAACCGAGATGGAGCTGGCGGTGGACGCTGTCGAGGAGGAGCACCTTAACGAAGAGGCTGCACTTGAAATAGAAGCGCCGCAAAGTCTACCAGCGGATGAACTACTCGCTAAGGCGCCCACAATTGACGAGGAGGCACTGCTGGAGACGCATGTTATTTTCAAACCAGTTGACGCTGTGATGAAGAGAGTTGACTTGCCCTGCGTGGCGTCGGAGAAGATTACGCAGCCAGAAGATGAGAATTTGCTGGACAAATTGGCAAACGAGTGCATGGAAGCAACTGATCAAGAGGACCTGGACGCCGAGGAGTTGGACGAAGAGCACGACTACTATGAAGAGACCTTAATAGAACGCTGCGACAACGAGCTGGATGAGACAACAATGGGTGTCACCAGCGAACTGGAACAGCTAGACACACTAAACAATGTGAACCTGTTGACTGCGCACGAAAACGCCTTAAAAGAAGAAACAACCGAAAGTATTACACCCGTAATCGCTACATTGCCGACAGCTGAAGAGAAGCCACCAATTGAAGACACGACCGCAGCAACGGCTCAATCGAATCGAATGGAAGTTGAGTGTGAAACAACGGACACTCACAATGCCGTCGACGAACCAAATGCGACAGCTGCGCAAGTAAGCATTGAAGGTGGTGAGGGCGCTCTTGTCAAGTCAGCCGCAGAATTATGCCCGACAATAAGCGACACTGAGCCACATTGCAGCGAACGATCTGCAGATATTAAAGAAGCCGCAGCGGAGTGCTCCGACCAGTCAGCTCCGCTATCGGCAGACGTTGCCAGTGGGGCCGAACTAAGTGATAACCGCCAAGCCAGCGATGACAAATCGGTGACGGCAACATCAAATACAAGGAAATCGACAGATGCCCCAGAGAATTTGTTTGTTACAAAGGCTGCGCTGAAGGCCTACGGCTCGCCCACAAAGTCGCGAGCACACTATCGCGTACAGCGCAGCTTGCGGCGCTCACTGAATTGGCCAATGGCGCGTTTGTCGTCATCAACGTCGACATTTTCGCCACTAACACTGGCATGTGGTGAAGTGGCAACACTACCGGTGGGAGAGCTTGGTGCAATCGCCGCGTCATCGGCAGTGACGCCGGTCGCCAGTCTCAGCCCGAATGCCGAATGTAGCAGCGTTGCGCAAGCATTGTCAGCAGCGGACGCAGGTGCCCAAACACAGGAAAATGCAAGCCCACCATTGCCGGAAGTCAATCGTGCAATTTTCTCGAGTTATAGCACGGCGGCAAAGCGTGGCCGCAGGCTAAAATGGCGCGGGCGGACCCCTTTGGCGGTCGGCGCGCATAAGCGTAGACATGTCGTGAGCGAGCGCACTGCGAAACCACAAATTCCCACTTGCTTCGTGCGGCTGAGGCGTCTGCATATGGATCGATGGGTGTGCGAGACGGATGTGGGTGAAGTTTCCACAGCAGCGACGACGTGCGAGTCACGCGATGTCTCGGAAAACGAAAGTGACGACGCGCGGCAGGACTTGAAGCGCACAGCCGAAACTGCAGCAGACACAAATGCGGAATCGGCGATATCTGGTGAAAGTGAAAGTACGCCGCTACGCATCGACCGTCACAGGAAACGCTTTAGGAAGCGGAAACACGCGTCGGAATGTAAGTATACGGAATTGGTGGCGCGTAGCTCACCCTGGAGAACTAAGGCTGAAATGAAACAAACCATGACTGAGGAAATTAAGATGTCGACAGACCAATCAGCACCACAGAGCGCCATTGTAGCGGAAGAACAGCCAACAACGGAACCGGAAGAGCGTTTAGCGGTCGCGGCGGAAAGCACCTTGAATATTGAGATAAAGGCGCCGGTTGGTGGTAGTGAGACTGAGCCGATTTTACAAAAGGCCAAACGGGGAAGAAAGCCCAAGCTGGGTGTGGCCAAAGCGACTAAAATTGTAACGCATCGCAAACGCTACCGCAGAAAGAAAGATGTGCAGGTTGTGGAGAGACGCAGCAAACGCATACGAAAACGCCTGAAAGGCAAATGTCAAATGGGAGATTGCCGATCGGCGGACGAGTCGAGTTGTTCAGATAAAAGCGACAAGCTCCCAAATGTTTTTCCAAGCGCAACGAAGCCAGCACGTACTGCAACACTGCAAGTGTCCTCAAATGTAGCCTCCGAAACAGTGCTGGAGAATACAGTGATCTCAAGCATGCACGAGTTGTTAAAGGAGGAACTTCCTAAATGCGCCCATCCGTTGACAGAGACCACTGAAAGCGAAAGTACCGAATCCAAAGCCGATCACACGATGCCAACCGCAACACAATTACAGCCAGCGGCGCAAAATGTCGACCTTCAGAGCGAAATATCAACACTCCAAGAAACTTGTGATACTGCAACTGCATCAGCTGCGCCAATGTCGCCAGTATCGTCAACGGAAGAACTGACAACTAGATTCGCAACGGAAGAGCTTCCAACATCATTAGTTGTGCGGATTTCACTTGCGTCAATCAGCTCCGATTTCCAAAGAATGCACCTCAAGCAACCACGACACGAAGACATGAACAACCAGTCGATAAGTCTGTTGCCAGTCAATGACGCAGTAACTCAGCCGGACACTTGTTCCAATGTGCTAGAGCGGCAGCATAGCACCCAGACAGAGAACAAATGTTGTGTGAGTGCCGCCGCCGATTGCTCTGATGCTGTGGCGAAGCATAGCGCCACGGTTGCTGATAATATTGCGACTGCTGAGCCGTGCATTGCTGACATTGCCAATGATCCTAGTCAGGTGTTGGACAGTTCGAACACCTCTGCCGCTTCGCCCACCGATGCCGCCGAAATTTCGTTAGTGTCGGAGATTGCGCATTCGCATTGCAGTCAGCAGGAAAGCGAGCAGAGCGATTTCTTGGGCTTCACACATGAGAGCGATGGGAGGGAACAATTGAACGGGAGTGCCACCTCGTCGGAGAGTCAGGACTCCATTGAGGCGCAACGTGACGCGGACCTGAATACGTCGATGAATGCTTCATCAAAAATTCACGACTTCATCAATGATTTTCAGGCGCACTGCATTGATCCGTCTGAAGTGGAGGCGGACGAAGAGGAGGAGCGAatgtaccaacaacaacagcaagcagcaaTGACCGCCCTGCATATGACAACAGGTGCAATGGTGCCCTTGAGTAATGAGCAACAACAATCGAATATGCAACTGCTGAGCGAGTCGAACCTGAGCGAAATGCAGGATGTGGAGACCACTTTGAGTGGTATTCTGAACGAGATGCAGGACCAGCACATCTACACGCCAGTCTCCTCGCACACCGACGACTTTTTCACGCAGTCTGTTTACTCGCCGCTCTCTGAACCGCCcggcacacccacacacagcaTTTACGTCGAGAGCCCAATGGATGgaagcggcagtggcagcgtcAGTGTCGCTGGTGGCGGCCTCTCCGTGGAGTCGAGCCCCTATGCGCCACACACCGCCGGTTTGCAAGTCGCCGACACATCAGCCGCTGTACAGACGCCCGAAGAAGATGCGTTCACCAAAAATTTCCGCACCTACGGGGAGTGCTTCACCGAAGACAGCACCCAGTCCGAACTGATAGGCTTCCAAAATGACATACCCTGTTTTGAAAACATTGAGATGGCGGCGACGACAGCCAGCACGGCCGCAACGACGCCAACGAACAGCGCAGGCTCCAGCCCGAGTGGCCACCTAACCAGCGGACGCGCAATCATAACGAACAGTGCGCTACAGGGCGCGCTACCCAAAAGCGCTACCGACACAAATGTTCAGTATTTGGGTATGGCGCAGGACAGTGAGATCAGCGATGCGTCGGCGAACGGCATGGGGCTGGTGTGCACGACAGGGTCCGGCGTGCAAGTGCACGCGCCCGCCTTTCAAGTGAGTCCCGTCACAACAGCGTCGGTAGCCCAGATGCGGAATGGTCATGGACGTGACCTCGGCGCTGCCTACGCTGACGACAGCGAGAAGGAGTACGCAGTGGACAGCGCCACTTTGCAGCTGGCGCAGCTCCTAAACGATTTACAACCACctcatcaacaacaaccacagcagcaacaacaacaacccctgATACATGTGAACAATGAGTCGACGTCGCTGGTGGTTGCCGGCGGCAGCGCGCTGATGACCCCGACAAAAAGTGTGCCTGTCCAGCACAATGCCCCCGCTGCACATAAAATGCCGCGcattagcagcagcaacgcGAAAGTGCAGTATGTTACGCTGGctgctggcaacactgcttccgAGCCGCAGCACCTGCAGCTGGCCAACGTCAGCAGCCTGCCGCTGAGAAGCACGGGTCCGACACGCCTCAATATCTACAATTCCGCCAATGTAGGACCACAGGAGATCCAGTGGACGACCAGCACTGGCGAAACCGTGACCGCCACGACTTCGAATGTTCTTGATGGACAGGCGAGCGCGGCCACCACCACGTACTATATCAACGCCAGCGATCTGTACCAGTCGAATCTAATCACGACCACCTCCACGCGAGCGACCATGGTGACGGCACCAACGCTCGACACGGTCAGCGTCTCGGCGTTGTCACACACGCCTCAACAGTCCGCGGGATTGGATAAATGCTCCATGGACGCAAACGAAAACTACATCGAGgccatgcagcagcagcaacagcaacaacaacaacagcaacagcaacaacctaTAATGATTGTTATACCGCACGAGTTCATGCGCGCTGACGCGTCGGCAGGCACAGCGACCGCCGGCTCCACTCAGATTTACACCACCACCACGAACACCTCGACCGCCAACGGCACCGCCAGCCAGGATCTCAGCCACGCCTTGCACATCGCACAGACCCCACAAACAGTATTAGtgcagcagcaaccacaaccAACGCAGCTGGCACTACCGGCGCACAACAAGAGCGCAAACGCACAATATCTGACCACCAGCACCGTGGTGGCTTCGCCGCCCCGTCATACCAGACACACGGCATCACCACAGCATCgtcaactacaacaaaatcATCACCTGGCCACGGCCACGATCACCCCACCGCCAGTACAACAGCAACCGCGTCACGCACCCTCTCCACCACAAGCTCCCCagccacaacaaaaaccacagccGATCGCCCAGCCACAGGAGAAGGTCAACCTGACTTGCCGCTTCTGCCACAAGCGTCCGAAATTCACGAGCAATCTGGACTACAGCAACCACATCATTGCCATGCACCCCGTCGAAACGCCCTTCAATTGTCCTATGTGCCCGATGCACTTTACGCGCCGCGTCAAGCGGCAACAACACATTTTGGAAGAGCATGGCGCCCACCGATTCCAGTGTGCGCAATGCGGACAGAGCTTCAGCACGCAGCGGGCCCTTGATCTGCATCTCCAGCGCTCACATGCGCCGGAGTCctcccagcagcagcagcaacaaaaacaacagcagacTCAGGCGCTATTGCAGGCTCAGCAGCGCTATTTGGCGCATCGAAGCGCTTGGGCGGATGGCAGTAGCGGCAGCAACATCGGCTCAAACCACGCCCAGACGCAGATGGTGCGCGTGGAGGATGTCCACCTGCACGTGAGTGACGAGGACAATAAGGACAAGAAATCTATTGATCTGCAGCTCGGCAGCGGCACATTGACCACCGAGTCATCGCCGAGCTCACAAACCAGCAAACAGCAGCGAATACTTTGTTGTCCCGACTGCGATGATCCCTTTGACGAGACGCATACGCACCCGCACACGAACGCGCAGCAGCAATCAGAGCACCAGCAGCCGAAAAGCCTGCACGTAACGTTGCCCTCACCGGAGCAAACCGAGCCCGATTCCACCTCCACCACCACATTGCGTCACTTTCGCAAACGTCGCACATCCAACGCCAAATTAGCGGCCAATgtggctgctgccgccgccaacTGTTCGTCTTCCTCAGCAAGTGCAGCCGCGCTGGCTACTGACGGCGCCGCCGCACCCGAAGACGAGTTACTGCTGATGGAACGTGTGATGCGCACTAGTCACAACTGCCTCTTCTGCGACGAGCGCTTCACCAACGAGATATCGTTGCGCAAACATCACCTGCTTGCGCACAGCAGCCAGACCACAATGCCGTTTGTCTGCTCGATTTGCAAGCGCGGCTTTCGCATGCGCACCGCACTGCAGCGGCACATGGAGACGCACGACAGCGAGGGCCGACCGTTCGAGTGCACGCTGTGCCATGTGCGTTTTCCACGGCCGTCGCAGCTAACGCTGCACAAGCTCACAGTGCATTTTCTCAAGAAGCCACACACCTGCGAAGAGTGTGGCAAGCAATTCGGCACCGAGAGTGCGCTCAAGACACACGCCAAGTTTCACGGAGAACGTGACGTTGAATGCGACATGTGCAGCCGAAAGTTTTTCCTAATGAAAGACATGCGCAAACATCGACGCGTTCATACCGGCGAGCGCTTTTACAAATGCGATCTCTGTCCCAGCTCATTTTTGCATTATACGCGACTAAGTGCACACTTGAAGACACATCTGCCGTTGAGCGCCTACTTGCCGCAGGACACGCCACTTCAACTccaaatgcaacagcaacagtgcgCGTCCGCAAACACGGCGCTAATCAGCGCTGAAAGTGCGCAACAAGTGCAGCCGTcgcaggagcagcagcagccggaGGTGACGCTCGCCAGTGCCAGCGCAGTCATTAGCACCACAGCCACTGGCAGCGTCATAAGCACGCCGTAA
- Protein Sequence
- MNVDDAPAAPSVAAPPSATAEQYRSEHAATPPPTADAAETTQAAWANESDWSVNILDLCRSCGKPNATLHDLFVEVERDDGGGDGDIGDLVADKQDNSGENLPRFAPTEAENSATSAAVDMTAANLDISASKIDDSLTDGTTDNLAATVAAAPAEIPTTTLAAATASASAKATAQGQSNMENILQEMQIWQLRIKSNDGLPQRICPKCTAQFYIIHKFRRKCLKVQIRLRALHEERCLEEEQQQLLHEKESPLELNVPPALDIGNDLINDNYGQPLSEAELFESAAWNETDAPLLDSDASKTGLEPEPELEVEAEAETEVETEMELAVDAVEEEHLNEEAALEIEAPQSLPADELLAKAPTIDEEALLETHVIFKPVDAVMKRVDLPCVASEKITQPEDENLLDKLANECMEATDQEDLDAEELDEEHDYYEETLIERCDNELDETTMGVTSELEQLDTLNNVNLLTAHENALKEETTESITPVIATLPTAEEKPPIEDTTAATAQSNRMEVECETTDTHNAVDEPNATAAQVSIEGGEGALVKSAAELCPTISDTEPHCSERSADIKEAAAECSDQSAPLSADVASGAELSDNRQASDDKSVTATSNTRKSTDAPENLFVTKAALKAYGSPTKSRAHYRVQRSLRRSLNWPMARLSSSTSTFSPLTLACGEVATLPVGELGAIAASSAVTPVASLSPNAECSSVAQALSAADAGAQTQENASPPLPEVNRAIFSSYSTAAKRGRRLKWRGRTPLAVGAHKRRHVVSERTAKPQIPTCFVRLRRLHMDRWVCETDVGEVSTAATTCESRDVSENESDDARQDLKRTAETAADTNAESAISGESESTPLRIDRHRKRFRKRKHASECKYTELVARSSPWRTKAEMKQTMTEEIKMSTDQSAPQSAIVAEEQPTTEPEERLAVAAESTLNIEIKAPVGGSETEPILQKAKRGRKPKLGVAKATKIVTHRKRYRRKKDVQVVERRSKRIRKRLKGKCQMGDCRSADESSCSDKSDKLPNVFPSATKPARTATLQVSSNVASETVLENTVISSMHELLKEELPKCAHPLTETTESESTESKADHTMPTATQLQPAAQNVDLQSEISTLQETCDTATASAAPMSPVSSTEELTTRFATEELPTSLVVRISLASISSDFQRMHLKQPRHEDMNNQSISLLPVNDAVTQPDTCSNVLERQHSTQTENKCCVSAAADCSDAVAKHSATVADNIATAEPCIADIANDPSQVLDSSNTSAASPTDAAEISLVSEIAHSHCSQQESEQSDFLGFTHESDGREQLNGSATSSESQDSIEAQRDADLNTSMNASSKIHDFINDFQAHCIDPSEVEADEEEERMYQQQQQAAMTALHMTTGAMVPLSNEQQQSNMQLLSESNLSEMQDVETTLSGILNEMQDQHIYTPVSSHTDDFFTQSVYSPLSEPPGTPTHSIYVESPMDGSGSGSVSVAGGGLSVESSPYAPHTAGLQVADTSAAVQTPEEDAFTKNFRTYGECFTEDSTQSELIGFQNDIPCFENIEMAATTASTAATTPTNSAGSSPSGHLTSGRAIITNSALQGALPKSATDTNVQYLGMAQDSEISDASANGMGLVCTTGSGVQVHAPAFQVSPVTTASVAQMRNGHGRDLGAAYADDSEKEYAVDSATLQLAQLLNDLQPPHQQQPQQQQQQPLIHVNNESTSLVVAGGSALMTPTKSVPVQHNAPAAHKMPRISSSNAKVQYVTLAAGNTASEPQHLQLANVSSLPLRSTGPTRLNIYNSANVGPQEIQWTTSTGETVTATTSNVLDGQASAATTTYYINASDLYQSNLITTTSTRATMVTAPTLDTVSVSALSHTPQQSAGLDKCSMDANENYIEAMQQQQQQQQQQQQQQPIMIVIPHEFMRADASAGTATAGSTQIYTTTTNTSTANGTASQDLSHALHIAQTPQTVLVQQQPQPTQLALPAHNKSANAQYLTTSTVVASPPRHTRHTASPQHRQLQQNHHLATATITPPPVQQQPRHAPSPPQAPQPQQKPQPIAQPQEKVNLTCRFCHKRPKFTSNLDYSNHIIAMHPVETPFNCPMCPMHFTRRVKRQQHILEEHGAHRFQCAQCGQSFSTQRALDLHLQRSHAPESSQQQQQQKQQQTQALLQAQQRYLAHRSAWADGSSGSNIGSNHAQTQMVRVEDVHLHVSDEDNKDKKSIDLQLGSGTLTTESSPSSQTSKQQRILCCPDCDDPFDETHTHPHTNAQQQSEHQQPKSLHVTLPSPEQTEPDSTSTTTLRHFRKRRTSNAKLAANVAAAAANCSSSSASAAALATDGAAAPEDELLLMERVMRTSHNCLFCDERFTNEISLRKHHLLAHSSQTTMPFVCSICKRGFRMRTALQRHMETHDSEGRPFECTLCHVRFPRPSQLTLHKLTVHFLKKPHTCEECGKQFGTESALKTHAKFHGERDVECDMCSRKFFLMKDMRKHRRVHTGERFYKCDLCPSSFLHYTRLSAHLKTHLPLSAYLPQDTPLQLQMQQQQCASANTALISAESAQQVQPSQEQQQPEVTLASASAVISTTATGSVISTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -