Basic Information

Insect: Melieria crassipennis
Gene Symbol: Clamp
Assembly: GCA_963668005.1
Location: OY764961.1:56056437-56058797[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.3e-05 0.0022 19.0 1.7 1 23 136 158 136 158 0.99

2 7 9.7e-06 0.00091 20.2 1.0 1 23 460 482 460 482 0.98

3 7 6.8e-06 0.00064 20.6 0.1 1 23 488 510 488 510 0.99

4 7 3.9e-06 0.00037 21.4 3.2 1 23 516 538 516 538 0.99

5 7 2.2e-06 0.00021 22.2 0.4 1 23 544 566 544 566 0.98

6 7 1.9e-06 0.00018 22.4 0.4 1 23 572 594 572 594 0.98

7 7 0.00016 0.015 16.3 0.1 1 23 600 622 600 622 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.3e-05	0.0022	19.0	1.7	1	23	136	158	136	158	0.99
2	7	9.7e-06	0.00091	20.2	1.0	1	23	460	482	460	482	0.98
3	7	6.8e-06	0.00064	20.6	0.1	1	23	488	510	488	510	0.99
4	7	3.9e-06	0.00037	21.4	3.2	1	23	516	538	516	538	0.99
5	7	2.2e-06	0.00021	22.2	0.4	1	23	544	566	544	566	0.98
6	7	1.9e-06	0.00018	22.4	0.4	1	23	572	594	572	594	0.98
7	7	0.00016	0.015	16.3	0.1	1	23	600	622	600	622	0.96

Sequence Information

Coding Sequence: ATGGAAGACCTGACCAAGAATATAATTTTCACAACGAATGCCATTGGGGCCAATGGACAGCCCACCACCATACAATATCAGACAGCCGATGGCACCATACTGAAACAGCCAAAAATCGAGGGACAAAAGACAGAGCAGCCCACCTTCTACTACACCACCACCAATGGCGGCGCAGCGACCACCGTGAATCTTGCTCAGCTGACCACCGATGACAACAAAACATGCTACATTGCACAGCCGGTGGGCGGCTACAACTATGCGCTGGTGAACGGCATGCAGCTCAATCAGGGTGGCACCATTGGCATTGCCACGCTGGACGCGCAAGGACGCCTCCAGATTGTCAATCAGAATAAGCCAATTGCAGCGACAATTTCTCCGCTGCAGAACACCATTTCCAACATAAGTTTCAAGTGCGACGTATGCGGTCTGATGTTTCCACATCTAGCTTTGCTGAATCATCACAAGCGCATACACGCGCAGGACGGCAGCGATCAGCAGTCGCATCAGACGCAGCCGGAAACCATTGTGGTAAATGCGCAGGGCCTAGTGCAGACCCAGAATATCATCACCGAGAACGGACAGATGGGCCAGATACAGATAGTCGCCACCGAATCATTGGAGCCAGCGTCTGCCGTActgcagcagccacaacaacaacagcaacagcccaCGGGCGCAACGAACAGCAACGAGGTTACCGTGACCACTAGCAGCGGTAGTAATGGCAGCGGTGGTAGTGGCACCGTCATGAAATCCGTCAAAATGACACAATCAAAGTGCATCACGTGCGGCAATCAAATATTGCAGCCCTCGAAACGCAGGGGGCCCAAAGTGGTGCGTTGCGACGAGTGTTTGCACGGCGATCAAGAAATGGCCGTtgcgcaacagcagcaacaacaacaacaacagcagcagcaacagcagctgacGTCGACGCAAATATTCGTAGCGCCCGATGGTGAGATAAAATTCGAAATGAATGAATTACCCAGTGGTACCTCGGATTCCTCAATGGATTCGCTTACAGCGCAGAGCATACTGCCGCATCAAATACAGCCGGTGCAGATAATATCAGCGTCAACGGCTACGTCGGCGAACGCGGCGcagcaaatgcaacaaatgggacagcagcagcaacaggccggtcagcaacagcatcagcatgcgcagcagcagcagatggCGGTAGTGCCGAAAAGTGAGCCGGGCGGAGGCGGTGCGCACACGGCAAGCGGCCATCATCCGGTGAAGAAGCGCAGCTCACAACAGGTCACCAAATGTCAAAAGTGCAATGGGTCCGGCGTGGTGTTTGTGGCCACCGGTGCAGCGGCCAGCAAGCAGCAGGCGGTTCATATTAAACCCGAaaatCCCAAACCCTTTACGTGCAACATTTGCGGCGGCACCTTCTCGCGATACTCGAGTCTCTGGTCGCACAAGAAGCTACACAGCGGCGAAAAGAACTACAAGTGTTCCATCTGCGGACTGGCGTTTGCCAAGGCTGTCTACTTGAAGAATCACGCGCGCATACACACCGGCGAAAAACCATACAAATGCCAAACGTGCGGCATGCAGTTCTCGCAATCGCCGCATTTAAAGAATCACGAGCGCACGCACAGCGGCGAACGTCCCTATGTGTGCGAGGTGTGCGATAAGGGCTTTGCGCGTCACGCCACGCTGTGGAATCACCGGCGCATTCACACTGGCGAAAAGCCGTACAAGTGCGACATATGCGGATCGGCCTTCTCGCAGGCGGCGCACTTGAAGAATCACGCCAAGGTGCATTCGGGTGAGAAGCCCTTCCGTTGTGATATCTGCTCGGCGGCGTTTGCCGATCGCTTTGCGCTGAAACGACACCGCGGCATACACCAGAAATATGGTCAAACAGCGCCGCGTCAGCCCTCGCAATccgtacagcaacaacagcagaccATCACCACCGAGGACGGCCAAACGGTGATCATACAAAAGCAGGAGATACCCGAAATGGATGATGATGCACAGCACGAGGTGATAATTTCGGGCTTATAG
Protein Sequence: MEDLTKNIIFTTNAIGANGQPTTIQYQTADGTILKQPKIEGQKTEQPTFYYTTTNGGAATTVNLAQLTTDDNKTCYIAQPVGGYNYALVNGMQLNQGGTIGIATLDAQGRLQIVNQNKPIAATISPLQNTISNISFKCDVCGLMFPHLALLNHHKRIHAQDGSDQQSHQTQPETIVVNAQGLVQTQNIITENGQMGQIQIVATESLEPASAVLQQPQQQQQQPTGATNSNEVTVTTSSGSNGSGGSGTVMKSVKMTQSKCITCGNQILQPSKRRGPKVVRCDECLHGDQEMAVAQQQQQQQQQQQQQQLTSTQIFVAPDGEIKFEMNELPSGTSDSSMDSLTAQSILPHQIQPVQIISASTATSANAAQQMQQMGQQQQQAGQQQHQHAQQQQMAVVPKSEPGGGGAHTASGHHPVKKRSSQQVTKCQKCNGSGVVFVATGAAASKQQAVHIKPENPKPFTCNICGGTFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDICGSAFSQAAHLKNHAKVHSGEKPFRCDICSAAFADRFALKRHRGIHQKYGQTAPRQPSQSVQQQQQTITTEDGQTVIIQKQEIPEMDDDAQHEVIISGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -