Mcra000667.1
Basic Information
- Insect
- Melieria crassipennis
- Gene Symbol
- ham
- Assembly
- GCA_963668005.1
- Location
- OY764961.1:7025510-7065159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.027 2.6 9.3 0.0 2 22 423 443 422 445 0.88 2 9 0.081 7.6 7.8 2.1 1 23 452 475 452 475 0.92 3 9 1.9e-07 1.7e-05 25.6 2.4 1 23 481 503 481 504 0.96 4 9 2.5e-06 0.00023 22.0 1.7 1 23 510 532 510 532 0.95 5 9 6.2e-05 0.0058 17.6 5.0 1 23 538 560 538 560 0.99 6 9 0.00036 0.034 15.2 1.1 2 21 568 587 567 588 0.95 7 9 9.7e-09 9.2e-07 29.6 1.3 1 23 1094 1116 1094 1116 0.99 8 9 5.2e-07 4.9e-05 24.2 0.9 1 23 1122 1145 1122 1145 0.97 9 9 8.9e-05 0.0083 17.1 6.6 1 23 1151 1173 1151 1173 0.98
Sequence Information
- Coding Sequence
- ATGCCAGCCGCAAGTCGCCAAGTCGCCAGTCGTCGCTTTGGAGCGCGTCACGACACAGATAGCTGCAATGGCGATTGTTGTGGCGATTGTCTCTGCTGCTCGCATCGAACTTGTCAATCAGTTTCGTTGCTGACTGTCGCTGATTGTGCGCTGCTTGGCAGCAGTGGCGACGAATACGAACCCTCCGTGCGGCATCTCAACATTGCTCAATTTTCGCCACACGGTCACCACCTGCACCACCATCCCACCCACCCGCAGCATCATCAACATCACCATCATCCGCATCATACGGCGCACCTGGTGCCGCCGCCACCAGCGTCACATCCGGATCCGTCACACTACGAGCGCGCGCACAAACGCGACAAATTGCAAAACGGCCACAATCCCTACGAGCCGCACGCGTCCTACGCGCTCGGCCAGAGCGCCAGCGGCCAGTCGCCGGAGCACTCGCCCCtgaataataacaacagcagtaacagcaacaataacaacatcagcACGCCACAACAGCGACACCTGCCGACGAGCGCGGCCGCCGGCGTACCCGCGCACATGGAGCAATTCTTCGGTAGTAAGGCGCACACGGAGGGAATTTTCTCGCAGCTGGCGCGCCTGCAGGATCCCATCTCGGGGCTGGATGTGCGCGAGACGGGCGTCTACGCAAAGGTGCCGCTACAGCGCGGCACCCGCTACGGACCCTTCGCGGTGCAGTTGTGCAGCGAGCCGACAACGCGCAATCTCGCCTGGGAGGTCATAGCGCGCCCACACTTTCGCGGCTGGCTGGAGCCGCTGAACATTGCCTCCTGGCTAAAGAAGATACGATCCGTGGATGCGGAGGGAGAGGCTAATCTGAAGAATTTCCTCGTTGCAGGATATCTTTGGTATGAAACAAATCGTGATATAAACGCCGGTGAGGAGATCACTGTCGACGGACGGCCAAAAACGCCCATACACCTCGCGGACGGTCTGACCAATGGCGCAGAACAAATGGGCTCCTCGGGCTCAGTGCACGGCGATGATCGGAGTGAGCGTGATAACGTCCAACTTATGGTCACCGCTTTACGCATTCACCCCATCGACCAGCCAAAGAGCGACTTGGTGCGCAAGTTCAAGTCAAGGCAACTGACTTTGAACGCGTTGTCATATCGCACCAATCGATCACTTTACAGTGGCAACACCACCGGCGACGACGAATTCAACAAGGAAAAATCGTTCACGGAACAGCCGGACGCCGATCTGACAGACGACGAGAACGGCTTCGATATACGCTGTGAAGTTTGTGATAAAACCTACGGTGACTTGGAGAGCCTGGACGATCATTTGGTGGCTAAACATCACTTCCGAAAGGACGAATTCGCCTGCGATCTCTGCGCCAAGCGCTACTGCCATCGACCGCTGCTGCTGAAGCATCGCGCACTAATACACAACGACATACGAAAATATCCCTGTGAGAATTGTACCAAGGTATTTTGTGATCCATCGAATCTACAGCGGCATATTCGTGCCCACCACATCGGCGCCAGAAGTCACGCTTGCCCCGAGTGCGGCAAAACATTCGCGACATCGTCCGGCCTCAAGCAGCACACGCACATCCACTCCTCGGTGAAGCCGTTCCAGTGCGAGGTGTGCTTCAAGGCGTATACGCAATTCTCGAACCTGTGCCGGCACAAGCGCATGCACGCCGACTGCCGCATGCAGATTAAGTGCACCAAGTGCGGCCAGAGCTTCAGCACCGTCACCTCGCTGTCGAAGCACAAGCGCTTCTGCGACTCGACAAACGTGCCGTCGTCCGCGAGCGCCGCCGGCGTCCAGCTGCCCGCCGCCGTCTCGGCTCATCTGCCGTCGCACCAGCAAGCCGCCATGCAGTCGCGCGTCGCCGCACTGCAGTCGATGAacgccgccgccgtcgctgcCGGCGTAGGCGTGGGCGGTGGAGGGGGCATGTCCGGTGCGGCCATGCCCACGCCGCCTAATCCGTTCCTGCTGTTTCGCACACCGACCGGCTTCTTTCCGGGCTTTCCGGCGGCCTATGGCCTGCAGGGCATGTTTCCGCAGAGTCCGGCCCAGGCGTCCAGTTTCCCGCTCATGTTCCCCAAGCCCAATCTGGACATGCGCATTCCCGCCATGCAGCCGACCAACCACAACCACAAGCCGACCAATTTGCCGTCGCCGAGCGCCTTTCGGCAGCACCTGAACTTTGGCCTGAATGAGACAATGCGCGCCGGCGGAAGCTCGCCGCCCTACAGCGACACCCACAGTCAAAAGTCAaccaagtacaacaacaacaacaacaacagcactgtCAGTGAGTGCGAACGCGAACGGGAGCAGGTGCAGGAGAGAGAACGGGAACGCGAACGCGAACGGGAGCAGGCGGACGAGGAGGCTGACATTAAGCCTGCCATGCAGCTGACACTGGCTGCGTACACGAAGGCGCTGGCATACAGTTCGCCAACGGCGGCCAAGCGACCCAACTACTCACCGCGCAACGGCACCGACGAGGAGTCCAGTTCGTCAATCGACCTGAAAGCAGAGCCCAGTGACAATGCCGATGTGGAGCGAGAAGAGAAGCCAACACTGGATGCCGACAGCAAAAACCTCGAGGACGACAAGAAATCGATTGACGTCATCAGCACTCCGCCTCCCGCCGACTTGGCCAGCCTGAAGCAGTTGAGCGCTGGCGCCAGCGAATTGCCGCTGGATCTGAGCATTAACCGCAAGCGCAAGCACAGCGACAGCTGCAGCTCCAGCGCGGACGCCAAATCGGAGCACAGCGAACGATCGCGCAAGGGCGCCGAAACTCTGCCGGACCATGCGCACGACTCGAATTCGGGCTCGGCGCacgacaccaacaacaccagcaacaacaaccacacttcAGTTTCCACGCCCAAGAACGGCGTCCTGAACGCGTCGAACCACTCGTACCAGGGCAGCCCGGCCGTGTCGGGCACCGGCTCGCCGGGTCCGACGCCGTCGCCCTCACCGCCCGGTCACGAGACGCCCAACACAACGTGCGACGGCGGCAACGGCGCCGCGCCCATCTCCTGCCCGCAGCCCATTCATCCCATGCTGCTGGAGGAGATATACCGCACGCGTGCGCTGGGCGCGGCCTTCCAGCGGCCCTTTCCTTTTTTAGGACCAATGGGCGGACGGCCAGCCTATGAGCATCGCGGCATGCCGTTTCCGCCCGATCCCATTTTCCGCGAGGCGCTGCGTGCGGCCGGCCTCACCGGCGGCGTGCTGGCCGCGGCAGGCGGCGGCAAGATCAAGGACCGCTACACGTGCAAGTTCTGCGGCAAGGTGTTTCCGCGCTCCGCCAACCTGACGCGCCACCTGCGCACGCACACCGGCGAGCAGCCGTACACGTGCAAATACTGCGACCGCGCCTTCAGCATCTCGTCCAATCTGCAGCGCCACGTGCGCAACATACACAACAAGGAGCGGCCGTTCCGCTGCCACCTGTGCGATCGCTGCTTCGGCCAGCAGACGAACCTCGACCGCCACCTCAAGAAGCACGAGGCGGACACGACGGGCCTGGGCATCGGCATTGGCGATTCGCCGTCGTCGAACGAGGCCGATCGCGAGGACTCGTACTTTGACGAGATACGCTCGTTCATGGGACAGGTGACCTACAACGAGGACCTGTACACGCCCACCAGCATAGGCGGCGCGGAGAACGACACCGACTACGCGGGCAGCGATGCCGAGCAGGAGCTGTCCGTGTCGCGCTCCTCGTCGGCGGACGGCCTGGTCGCGACAGCCCGAAGTGCGGACAACGAGACAACGGCAATCAGCAAGGAGACGCTGGACACCAAAAGCAACGAAACGATCGAGCTTCCACTGCGCGTCCAATTGCGGCGCCACATATTTCGTAGATCATCACGCAAGCGCGGCGCGTCTCGACGCATTGGCATGAAACCGCACCGTTGTCGCTTCCGCACCGCTCGCCAATCCATCGCCAGCGCGTCGAACGTACATCATCCGCTCcgaccgcaccgcaccgcaccgcaccggcCGCCGTCCATCTGCCCCGGCCCGACTCCGGCATTAGCCAGCCGACCATCTGCGGTCTTGGGCAAAGGCGTGATTCGCAAAAGTGAGTTAATTACCCTTCCGGTGTGTTACGCCCTCAGCGAAATGCGGCTAAATCGATGtcacaacaacaacggtagCGGTAGCTGTAGCGGCACAGACGGCATCAATCATGCGAGCAGCGGCTCGCACCGACCAACCGAACAACCTGCAGCCAAGCAGCTGTTACCGTTACTTGGGCGATCCGCAACCGCCACTAACCGCGCTGCGGTCACTTTCGATTATGCGAAACAAAAAGCGCCGGCCGCGAGGAAGCGAACCGCGCCGCCGGTGGACAGCAGACAAAACAGAGCAGCAGCATCGACGATGGCGTTGGCCCTGACCACAGCCAACAAAGCGCCCCCTGGCACAGCGGTGTGCAGCCGTGGTGGCAGCCGCCGACTTGATCGCAGCGCAGGGCGGCGGCGTACCGTATGGGCCAACGGTACACCAGCCAAATGA
- Protein Sequence
- MPAASRQVASRRFGARHDTDSCNGDCCGDCLCCSHRTCQSVSLLTVADCALLGSSGDEYEPSVRHLNIAQFSPHGHHLHHHPTHPQHHQHHHHPHHTAHLVPPPPASHPDPSHYERAHKRDKLQNGHNPYEPHASYALGQSASGQSPEHSPLNNNNSSNSNNNNISTPQQRHLPTSAAAGVPAHMEQFFGSKAHTEGIFSQLARLQDPISGLDVRETGVYAKVPLQRGTRYGPFAVQLCSEPTTRNLAWEVIARPHFRGWLEPLNIASWLKKIRSVDAEGEANLKNFLVAGYLWYETNRDINAGEEITVDGRPKTPIHLADGLTNGAEQMGSSGSVHGDDRSERDNVQLMVTALRIHPIDQPKSDLVRKFKSRQLTLNALSYRTNRSLYSGNTTGDDEFNKEKSFTEQPDADLTDDENGFDIRCEVCDKTYGDLESLDDHLVAKHHFRKDEFACDLCAKRYCHRPLLLKHRALIHNDIRKYPCENCTKVFCDPSNLQRHIRAHHIGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCTKCGQSFSTVTSLSKHKRFCDSTNVPSSASAAGVQLPAAVSAHLPSHQQAAMQSRVAALQSMNAAAVAAGVGVGGGGGMSGAAMPTPPNPFLLFRTPTGFFPGFPAAYGLQGMFPQSPAQASSFPLMFPKPNLDMRIPAMQPTNHNHKPTNLPSPSAFRQHLNFGLNETMRAGGSSPPYSDTHSQKSTKYNNNNNNSTVSECEREREQVQEREREREREREQADEEADIKPAMQLTLAAYTKALAYSSPTAAKRPNYSPRNGTDEESSSSIDLKAEPSDNADVEREEKPTLDADSKNLEDDKKSIDVISTPPPADLASLKQLSAGASELPLDLSINRKRKHSDSCSSSADAKSEHSERSRKGAETLPDHAHDSNSGSAHDTNNTSNNNHTSVSTPKNGVLNASNHSYQGSPAVSGTGSPGPTPSPSPPGHETPNTTCDGGNGAAPISCPQPIHPMLLEEIYRTRALGAAFQRPFPFLGPMGGRPAYEHRGMPFPPDPIFREALRAAGLTGGVLAAAGGGKIKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHEADTTGLGIGIGDSPSSNEADREDSYFDEIRSFMGQVTYNEDLYTPTSIGGAENDTDYAGSDAEQELSVSRSSSADGLVATARSADNETTAISKETLDTKSNETIELPLRVQLRRHIFRRSSRKRGASRRIGMKPHRCRFRTARQSIASASNVHHPLRPHRTAPHRPPSICPGPTPALASRPSAVLGKGVIRKSELITLPVCYALSEMRLNRCHNNNGSGSCSGTDGINHASSGSHRPTEQPAAKQLLPLLGRSATATNRAAVTFDYAKQKAPAARKRTAPPVDSRQNRAAASTMALALTTANKAPPGTAVCSRGGSRRLDRSAGRRRTVWANGTPAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -