Mcra000322.1
Basic Information
- Insect
- Melieria crassipennis
- Gene Symbol
- -
- Assembly
- GCA_963668005.1
- Location
- OY764961.1:2920495-2929323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.4e-05 0.0032 18.4 2.1 1 23 532 554 532 554 0.97 2 18 2.3e-05 0.0021 19.0 2.3 1 23 560 582 560 582 0.97 3 18 0.0012 0.12 13.5 0.5 1 23 588 610 588 610 0.95 4 18 2.4e-05 0.0023 18.9 3.1 1 23 616 638 616 638 0.97 5 18 5.4e-05 0.0051 17.8 4.7 1 23 644 666 644 666 0.99 6 18 9.9e-05 0.0094 17.0 5.7 1 23 672 694 672 694 0.97 7 18 4.9e-07 4.6e-05 24.2 4.3 1 23 700 722 700 722 0.98 8 18 1.7e-07 1.6e-05 25.6 2.4 1 23 728 750 728 750 0.97 9 18 0.0001 0.0096 16.9 6.7 1 23 756 778 756 778 0.97 10 18 2.9e-05 0.0027 18.6 6.5 1 23 784 806 784 806 0.98 11 18 4.9e-06 0.00046 21.1 4.5 1 23 812 834 812 834 0.98 12 18 1.1e-05 0.0011 19.9 8.1 1 23 840 862 840 862 0.98 13 18 1.5e-06 0.00014 22.7 7.3 1 23 868 890 868 890 0.98 14 18 1e-06 9.8e-05 23.2 7.7 1 23 896 918 896 918 0.98 15 18 0.00033 0.031 15.4 9.5 1 23 924 947 924 947 0.95 16 18 0.00027 0.026 15.6 0.5 1 23 953 975 953 975 0.97 17 18 0.0012 0.12 13.5 4.4 1 23 985 1007 985 1007 0.98 18 18 1.4e-05 0.0014 19.6 1.6 1 23 1013 1036 1013 1036 0.96
Sequence Information
- Coding Sequence
- ATGAATTCTGAACATACCAGAGTAACTCCTAGTGAGTCAGCCACATCAATATCAAGGAAAACTGCGGCAGCTGCAGCATCTGATTcgcatcaacagcagcaacagcatatTGACAATTCGCGCCATCCACATcagtcgcaacaacaacaccagaaCTATTTGAATGAGCCTCAGGCTTATAAACAGCGGCCACGgacaccacaacaacagcggccaCAAGCGACCAAGtcccaacgacaacaaaaagATCAGTGGGTTTTGATGTCATCGTCGGGAAGTATCGGCAGTACGACGGCTGCCACgcccgcaacaacaacaattgtcagTGGTCAAGGCGGCCCCTTGACGCAGCTCAACCCACTCCCCTCAATATCTACGACGCCAGCGTCAGCTGCAGCGGCGGTCAGTACGTCAGTGTTGGCGGTGAGTGCGGCTACTAATCAGGCGATTTGTCCGACGACGGCTGTTGGTGCGGGTGACGTTGTTGCcatcactgctgctgctgcgacagTCAATAAGTCAACAGCATCCAGCAGCAACGCAGCAACATTGACATTGCattcgcagcagcaacaacaacgcttgCAGCAGAATGTCTCCGCAGCACCGACAACAACGGCAGtcgcggcagcagcagcagctgcaacaaccGCACTTATACCAAATGCACAAAATCTGGGCAAGTACTGGGTGGTATCCAACGGTCAAGCACTTCCGTATAACATTTTACCGAATGGTACAATAATCACAGCGCATCAACGACACCCGACCTCAACAGAGCcacagcatcagcagcaacaacaacaacaacagcaccagcagcagcagcagcagcaggccaTACAAGTGCATGCTGCAGTCAATGCAAGTGATGACaatcgacagcaacaacagcagcagcagcagcaacagcaacacgtatctcagcagcagcaacagcatgtAGCTTCTGTTtcacagcagcaacaagaatTCATTAAAGAGGAGAAACCCTTTGCAGCGAACGGTAAACTAAATCAACAAATTGTTATGCAACACGTAACCGCGGTCACGTCGACACCCACAACGTCTGGCGCCACGACGATCACGTTGGGCGCGCCCAAGACTGAATCCAAGGAGGACGGCATGGGCAAGCCCCCGCCGGGCATTGAAATGTACAAAGTTAACATTGAGGATATATCGCAGCTGTTCACTTACCACGAGGTGTTTGGCAAAATACACGGTGACGTGATGAACCAGCAATTGGCTGCGCACGCAGTGCCCGCCCCGCCACCACCGTCGCACGGCAATGCCTCAAACAATGCCGCCGTTGCAGCGGTGGTGGCCAGCGCCAATGCCGCTGCAGCGgcggctgctgcagctgctgctacCAACACAACTACTGGCGTGGCGCCAACCACGACGACCAACCTGACCACGGCGATTAGTAATAGTGCCGGCGGTACCACCACCGCCCCAACCACCTCGGCGACGGCCACCACCACCGTGACCGGTGAGTTGCTGATGCCGAAAATGGAGGGCGGCCTACCAGGGGTGGACCAGACTACGACGATCACCTTGGCGCCGGACGGCACACCAATTGCTACCGGGACACATGTCTGCGACATATGCGGAAAAATGTTCCAGTTCCGGTACCAGCTGATTGTGCATCGCCGCTACCACAGTGAGCGCAAGCCTTTCAATTGTCAGGTGTGCGGTCAATGCTTTAACACGTCGCAGGATTTGACGCGGCATGGCAAGATTCATATTGGCGGGCCGATGTTCACTTGCATTGTATGCTTCAATGTGTTTGCGAACAACGCCAGCTTAGAGCGGCACATGAAGCGACATTCGACTGACAAGCCGTTTGCCTGCACCATTTGCCAGAAGACGTTCGCGCGCAAGGAGCACCTCGACAACCACTTCCGTTCGCACACCGGCGAGACGCCGTTCCGGTGCCAGTACTGCGCCAAGACATTTACGCGCAAGGAGCACATGGTGAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTCAACCACTACATGTGGCACACTGGCCAAACGCCACACCAGTGCGATGTGTGCGGCAAGAAGTATACACGCAAGGAGCATCTGGCTAATCACATGCGCTCGCACACTAACGACACCCCATTTCGGTGCGAGATCTGTGGCAAGAGCTTCAGCCGCAAGGAACATTTCACCAATCACATTCTGTGGCATACAGGAGAAACTCCTCATCGGTGTGATTTTTGCTCGAAGACGTTCACGCGAAAGGAGCATTTGTTGAATCACGTTCGCCAGCATACCGGCGAGTCGCCGCACCGCTGCACGTATTGTTTGAAAACATTTACTCGTAAGGAACACCTCGTTAACCATATTCGCCAGCACACCGGCGAGACGCCGTTCAAATGTACGTATTGCACGAAGGCGTTCACGCGCAAGGACCATATGGTGAACCACATACGGCAGCACACCGGTGAATCACCCCACAAGTGCACCTATTGCACGAAGACATTCACGCGCAAGGAGCATCTTACCAATCATGTGCGCCAGCACACCGGCGAGTCGCCGCACAAGTGTGAGTACTGCAAGAAAACGTTCACGCGCAAGGAGCACCTGACGAATCACATTCGCCTGCATACCGGCGACTCGCCGCATAAGTGCGAGTACTGCCAGAAAACGTTCACGCGCAAGGAGCATCTGAACAATCATATGCGCCAGCATTCGAGCGACAATCCGCACTGTTGCAATGTTTGCAATAAGCCGTTCACGCGAAAGGAGCACCTCATAAATCACATGTCGCGCTGTCACACCGGCGACCGACCGTTTGCCTGTGAGACGTGCGGTAAGTCGTTCCCGCTGAAGGGCAACCTGCTGTTCCATCAGCGCAGCCACACCAAGGGACAGGAGTGCGAGCGACCGTTCTCTTGCGAGAAGTGCCCCAAGAACTTTATTTGCAAAGGTCACCTTGTGTCGCACATGCGGTCGCATTCTGGTGAAAAGCCGCATGCGTGCACTCTGTGCAGCAAAGCATTTGTTGAGCGTGGCAATCTGAAGCGTCATATGAAGATGAACCATCCGGATGCGGTGATGCCCCCGCCGCCAGTGCCGCATCCGCAAATACCGGCCGGTATATTGACATCGGTCAAGCAGGAAATCAAGCCTATAATAATTCCTCATCAGACACCAACAATGCACACTATACAGCAAATAACATCAGGAGCTGCTGCGGCAAATGCTGTGCAGTTGGCGCCTGGCCTGGTGCCGCTGGTAACCTCAACGATCACATCGCATAACAgccaaaagcagcagcaacaacaggcgcaccagcagcatcaacaacaggtgcaacagcatcaacagcagcagcaacaacaacaacagcagcaactgcaattgcagcaacagcagcagcaactgctgCAGCTGTCTATTCAACAGGCAGCTcaccaccagcagcaacaggaGCAACACCgtcagcaccagcagcagcaacaggcacACCATCAGCAGCAAACCGCTCAGCAGCAGGGTCACCCGGCACAGCCACAACAACCCCAGCCGCAACAGCAGCCACCACAAGTGCCAATTGCCCTGATACAGACCGATCCGAGCGCGCTGGCACGCGCCGCCATGCAACTGCAGCACCTGCCAGCGAATGTCGAGCAGCATCCGGTGGTTTACTAA
- Protein Sequence
- MNSEHTRVTPSESATSISRKTAAAAASDSHQQQQQHIDNSRHPHQSQQQHQNYLNEPQAYKQRPRTPQQQRPQATKSQRQQKDQWVLMSSSGSIGSTTAATPATTTIVSGQGGPLTQLNPLPSISTTPASAAAAVSTSVLAVSAATNQAICPTTAVGAGDVVAITAAAATVNKSTASSSNAATLTLHSQQQQQRLQQNVSAAPTTTAVAAAAAAATTALIPNAQNLGKYWVVSNGQALPYNILPNGTIITAHQRHPTSTEPQHQQQQQQQQHQQQQQQQAIQVHAAVNASDDNRQQQQQQQQQQQHVSQQQQQHVASVSQQQQEFIKEEKPFAANGKLNQQIVMQHVTAVTSTPTTSGATTITLGAPKTESKEDGMGKPPPGIEMYKVNIEDISQLFTYHEVFGKIHGDVMNQQLAAHAVPAPPPPSHGNASNNAAVAAVVASANAAAAAAAAAAATNTTTGVAPTTTTNLTTAISNSAGGTTTAPTTSATATTTVTGELLMPKMEGGLPGVDQTTTITLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQCFNTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHKCEYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPVPHPQIPAGILTSVKQEIKPIIIPHQTPTMHTIQQITSGAAAANAVQLAPGLVPLVTSTITSHNSQKQQQQQAHQQHQQQVQQHQQQQQQQQQQQLQLQQQQQQLLQLSIQQAAHHQQQQEQHRQHQQQQQAHHQQQTAQQQGHPAQPQQPQPQQQPPQVPIALIQTDPSALARAAMQLQHLPANVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -