Mvil080296.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720426.1:51938-53500[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00049 0.11 15.4 3.8 1 23 128 150 128 150 0.99 2 13 0.0037 0.83 12.7 6.7 2 23 157 178 156 178 0.95 3 13 0.024 5.5 10.1 1.2 1 23 184 206 184 206 0.97 4 13 0.00047 0.11 15.5 0.4 1 23 212 234 212 234 0.97 5 13 0.028 6.2 9.9 7.3 1 23 240 262 240 262 0.98 6 13 0.32 72 6.6 5.3 1 23 291 314 291 314 0.96 7 13 0.049 11 9.1 2.5 1 23 320 342 320 342 0.97 8 13 0.0021 0.47 13.4 0.6 1 23 349 372 349 372 0.95 9 13 0.018 4.1 10.5 0.6 1 23 378 400 378 400 0.96 10 13 0.036 8.1 9.5 3.0 1 23 405 427 405 427 0.93 11 13 0.00025 0.056 16.3 2.6 1 23 433 455 433 455 0.98 12 13 0.081 18 8.4 1.8 1 23 460 482 460 482 0.97 13 13 2.8 6.3e+02 3.6 1.9 2 22 489 509 488 509 0.91
Sequence Information
- Coding Sequence
- ATGTCGCAGGTAAATTCGGAAAGTCCTAAAATAGGTAATTTTTGTGCAGTTCTAATCAAGGAAGAAGTTCATTTTGTTgacattaaaaatgaaacctGTAACACAACTACTTGTGACATACCTCAAACTTATATCTTTGAAGAATCAAACACTAAtgttagtttaaattttgagcAGGGTGTTAAAGAAGAACCTGAAGATGTTTACGATAACACCTGTACGAAAGTCGAAGCTGATGTTAatccaaatattattaaacacgaTTTAAAAGACGAATTCAAAAACATCGAGTTAGAGGAAGTTGTAATCAAAGACGAATTTCAAACAACCCCCGAAAACAATCCCAAACCACAAACAAACGATCATTCGGAAGGAAAACGTTATACATGTAATCTGTGTAATTTCAAGAGTGCGCACAGAAGTAGTCTCCGAAGCCATATGCTAAGGCATAAGGGAGAAAAGCCGTGCGCTTGCAGTTTATGCGAATATAAAACCCGTCACAAAAGTAACCTCAAAACGCACATGACGAAGCACACCGGCCAAAAACTATTCGCATGTGATTTATGCGACTACAAAACTGCGTGTAAAGTGAACCTCGAAAATCACATAAACAAGCATACCGGCGAAAAATTGTTTGCTTGTGGTTTATGCGAGTATAAAACCGCATACAAAGCGAGCCTCAACAAACATCAAAGAGTGCACACAGGTGAAAAGCCATACTCATGTAACTTCTGTGAGTTTAAGTGTGTACATAAAGTAACGCTTAGAAAGCATTTGAATAAGCACACGGGTGAAACTTCGTTTGCTTGTAACATGTGTGAAGTCAGCGATCTTCAAGATTGCGTGTGCAAGAAAGGTGTGAAGAAAGTACATTCGTGTGAGTTATGCGAATATAAATGCGAACATAAGTATGTGCTTAAGCAACATGTAATGTCGATTCATACCGGTGAAAAACCGTACGCTTGCGATTTATGCGAATTTAAATGTGTGGCTAAGAAGTATCTTAAAACTCACATGCTTTATCATGGCACAGGGGATAAACCATTCGCTTGTGATTTGTGCGATTTTAAAACCGTACGCAAGTATTACCTCAAACAGCATGTTATTTCCGTTCACACCGTAGATAAACCGTTCGCTTGTgatgtttgtgaatttaaaaccacCCGGAAAAATATTCTCAAACGACATATGCTGGCTCATAATGGAATATTCTTCACCTGTGATTTTTGCGAGTTTAAAACCATGCATAAAGACAATCTCAAGGCGCACCTCGGTTTTCATACCGGTGAGAAGCCGTTCGTTTGCGACGTGTGCGGACATAAATTTCCGCACAAGCGATATCTCGACGGGCATATGAACAGTCATCGGGAAAAAACTTACGCTTGTGACTTGTGCGATTTTAAAGCGACCTGCAGGGGTTACCTAAATAAGCATATGAAGATTCACTCAACGAAGGAGCTGCTTATTTGTGAAGTGTGCAAGTTTAGAACTATTAAGCAGAAGGCTTTTAAAGAACATAAGTGCACCGTAACATCAGTAAATTTAACTCGGCTACAAACTTAA
- Protein Sequence
- MSQVNSESPKIGNFCAVLIKEEVHFVDIKNETCNTTTCDIPQTYIFEESNTNVSLNFEQGVKEEPEDVYDNTCTKVEADVNPNIIKHDLKDEFKNIELEEVVIKDEFQTTPENNPKPQTNDHSEGKRYTCNLCNFKSAHRSSLRSHMLRHKGEKPCACSLCEYKTRHKSNLKTHMTKHTGQKLFACDLCDYKTACKVNLENHINKHTGEKLFACGLCEYKTAYKASLNKHQRVHTGEKPYSCNFCEFKCVHKVTLRKHLNKHTGETSFACNMCEVSDLQDCVCKKGVKKVHSCELCEYKCEHKYVLKQHVMSIHTGEKPYACDLCEFKCVAKKYLKTHMLYHGTGDKPFACDLCDFKTVRKYYLKQHVISVHTVDKPFACDVCEFKTTRKNILKRHMLAHNGIFFTCDFCEFKTMHKDNLKAHLGFHTGEKPFVCDVCGHKFPHKRYLDGHMNSHREKTYACDLCDFKATCRGYLNKHMKIHSTKELLICEVCKFRTIKQKAFKEHKCTVTSVNLTRLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -