Mvil080305.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720426.1:87387-89036[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00042 0.094 15.6 6.2 1 23 151 174 151 174 0.98 2 13 0.1 23 8.1 7.3 1 23 179 201 179 201 0.97 3 13 0.033 7.5 9.6 1.2 1 23 207 229 207 229 0.97 4 13 0.0042 0.96 12.5 3.1 1 23 235 257 235 257 0.97 5 13 0.034 7.7 9.6 3.0 1 23 263 285 263 285 0.97 6 13 0.099 22 8.2 1.4 1 23 291 313 291 313 0.95 7 13 0.00017 0.038 16.9 1.2 1 23 318 340 318 340 0.98 8 13 0.48 1.1e+02 6.0 1.2 1 23 346 368 346 368 0.96 9 13 0.0091 2 11.4 3.8 3 23 386 406 384 406 0.96 10 13 0.0078 1.8 11.6 1.3 1 23 412 434 412 434 0.98 11 13 0.81 1.8e+02 5.3 6.1 1 23 439 461 439 461 0.97 12 13 2e-05 0.0045 19.8 1.4 1 23 467 489 467 489 0.98 13 13 0.00044 0.098 15.6 0.1 1 23 494 516 494 516 0.98
Sequence Information
- Coding Sequence
- ATGGTAGAAAGAGGGAGTTATAACATGTCTGAGATAAATACGGAAAGTAACACAATAGGCAAGTTTCATTTAGTTCTAATCAAGGAAGAAGTTGAGCCCGAAACCTATAATGAGACTGCTTATAACTTCAATCAAACGGATATTATTGAAGAGACCGGCGCGGACATTACCTCAAATCTTAAGCAGGATGTAAAAGAAGAATCTGAAGACTTAAGCGACATTATCAAAGTAAAAACTGAAGCAACTTTTGAAGAAAACTACCGGAATGTCGACCCGAATCAGGTGGAACATGATTTAAAAGACGAACTGGAAAACTCAGGTAAAATCGAGGAAGAAGAAGTCAAAATAACTTTTGAGGAAACCAACTGGAAAGTTGATCCGAATCTTGTGGAGCAGGATTTAAAAGACGATCCGAAAACGGGTCTCAAAGAACACATAGGTGAGAAACGTTATTCGTGTGCCACCTGCGGATACAAATGTGAAGACAAAGTGCACTTCAGAAGGCATATGCGTAGATATCATAAAAGCAAAACGCATTCATGCAACTTATGCGAATATAAATGTATCTATAAATGTAAGCTCGAATTACACATGCGTGTTCACACGGGCGAGAAACCTTTTGCTTGCAATTTATGCAATTATAAAGCCGCAAGTAAATACAGCCTCAAATTCCATATGAATTCGCATACTGGTGAAAAACGGTTCGCTTGCGATTTATGCAATTTTAGGACTTCGTACAAGTGTAATCTCAGAATACATGTGAATACCCACACAGCTGAACGAatatattattgtaattattgtacATATAAGACCTTGCGTAAAGATGGGTTTAGAAGCCACATGCTTAGTCACAAGGATGATAAACCATTTGTTTGCAACATGTGCGATTTTAAAACGGCAAACAAATCCATTTTTAATCGTCATAAGGTTAGCCACAGCGAAAAAGCATTCACTTGTGGCTTGTGCGATTTCAGAACGGCTTACAAATATAATCTCCGCACCCACATGAGTGTTCATACTCGCGAAAAGCAGTTCGCTTGTGATTTATGTGATTTCAGAACCGTGCATAAGCAGATACTCGAGAGCCATATAACTAAACACAAGAAACCGGTTAAAACTACGAAACGCATATACGAAGACAAAatgcttttttgtaatttatgtgagtttAAAACCAAACATACGTACAACCTCAAGGTGCACATGTTAAAGCACACTGGTGAAAAACCGTACGCTTGCGATACATGCGAGTTTAAAACGGCATATCATAACGCTCTTACAAACCACATGCTCACTCATCAAGGTATATTCTTTTCCTGCGATCATTGTGATTTTAAAACTACTTGCAAGACGAGTCTCAAAGTGCATGTGCTTCGTCATACTAGTGAGGAGTCATTCGTTTGTAATGTGTGTACGTATACAGTAACGCGTAAACACTTACTCGAGCGGCATATGGAAATTCATAGGGAGAAAACATTCGTTTGTGAATTGTGCGGGTATAAAGCTGCACGTAAAGCCTATCTCGATAGTCATATGAAGGTTCACCCAAATAGGGAGTTGCTTATTTGTAAGTTTAGGGCAATTATTAAGAAGAAGATGTTCGATGAACATAAATGTGCTCACCAAACTAGCACGGCTTCTTCGTAG
- Protein Sequence
- MVERGSYNMSEINTESNTIGKFHLVLIKEEVEPETYNETAYNFNQTDIIEETGADITSNLKQDVKEESEDLSDIIKVKTEATFEENYRNVDPNQVEHDLKDELENSGKIEEEEVKITFEETNWKVDPNLVEQDLKDDPKTGLKEHIGEKRYSCATCGYKCEDKVHFRRHMRRYHKSKTHSCNLCEYKCIYKCKLELHMRVHTGEKPFACNLCNYKAASKYSLKFHMNSHTGEKRFACDLCNFRTSYKCNLRIHVNTHTAERIYYCNYCTYKTLRKDGFRSHMLSHKDDKPFVCNMCDFKTANKSIFNRHKVSHSEKAFTCGLCDFRTAYKYNLRTHMSVHTREKQFACDLCDFRTVHKQILESHITKHKKPVKTTKRIYEDKMLFCNLCEFKTKHTYNLKVHMLKHTGEKPYACDTCEFKTAYHNALTNHMLTHQGIFFSCDHCDFKTTCKTSLKVHVLRHTSEESFVCNVCTYTVTRKHLLERHMEIHREKTFVCELCGYKAARKAYLDSHMKVHPNRELLICKFRAIIKKKMFDEHKCAHQTSTASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00978818;
- 90% Identity
- iTF_00978818;
- 80% Identity
- -