Mvil080295.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720426.1:45241-50723[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0019 0.44 13.5 2.1 1 23 136 158 136 158 0.98 2 20 0.0038 0.87 12.6 0.6 1 23 164 187 164 187 0.95 3 20 2.5e-05 0.0056 19.5 2.0 1 23 193 215 193 215 0.97 4 20 0.16 37 7.5 3.6 1 23 220 242 220 242 0.92 5 20 0.00011 0.024 17.5 2.9 1 23 248 270 248 270 0.98 6 20 3 6.7e+02 3.5 1.4 1 23 275 297 275 297 0.93 7 20 0.012 2.6 11.1 1.9 1 23 302 324 302 324 0.97 8 20 0.042 9.5 9.3 1.6 1 23 330 352 330 352 0.96 9 20 0.038 8.5 9.5 4.4 1 23 488 510 488 510 0.98 10 20 0.00097 0.22 14.5 3.3 1 23 516 538 516 538 0.98 11 20 0.0016 0.35 13.8 0.3 1 23 572 594 572 594 0.97 12 20 0.051 12 9.1 7.3 1 23 600 622 600 622 0.98 13 20 0.097 22 8.2 2.6 2 23 652 674 652 674 0.94 14 20 4.6 1e+03 2.9 4.6 1 21 680 700 680 702 0.94 15 20 0.0059 1.3 12.0 1.6 1 23 709 732 709 732 0.95 16 20 0.034 7.6 9.6 0.6 1 23 738 760 738 760 0.96 17 20 0.018 4 10.5 2.5 1 23 765 787 765 787 0.97 18 20 0.036 8.2 9.5 4.9 1 21 793 813 793 815 0.94 19 20 0.47 1.1e+02 6.0 1.6 1 23 820 842 820 842 0.95 20 20 5.1 1.1e+03 2.8 1.9 2 22 849 869 848 869 0.91
Sequence Information
- Coding Sequence
- ATGTCGGAGGTGAATTCGGAAAGTAATAAAATAGACAGTTTTTATAGTGTTTTAATCAAGGTAGAAGCTGACACCGAACCTCATCTTGGTGACATTAAAAGTGAAACCTTGAACACAACTGCTTGTGATATACATCAAACGTATACTTTTGAAGAATCAAACATTCatgttcgtttaaattttaagcagGGTATTAAAGAAGAGCCTGAAGATGTTTACGATAACACCAGTACGaaggttgaaataaaaattgaagctgACGATAATCCAGGCATTATTGAGCACAATTTAAAGGAGGAATTCAAATACATCGAGCCAGAGGAAGtcgtatttaaaaacgaatttgaAACAGCCGCCGAAAACAATCCCAAATCACAAGCAAATGATGATTCGGAAGGAAAACATTATGCATGTAATCTGTGTAATTTCAAGAGTGCACACAAAGGCAGCCTCCGAAGCCATATGCTAAGgcatacaggagaaaagccgtttgctTGCGATTTGTGCGATTTTAAAACCGTACGCAAGTATTACCTCAAACAGCATGTTATTTCCGTTCACACTGAAGAAAAACCGTTCGTTTGTGATGTTTGTGGATTTAAAACTACACGAAAACATTCTCTCCAACGCCATATGCTCGCTCATAACGGAATAGTCTTCACCTGTGATTTTTGTGAGTTTAAAACCGTGCATAAAAACAATCTCAAAACGCATGTCGGTTTTCATACCGGTGAGAAGCCGTTTATTTGTGACGTGTGTGGACATAAATTTCCGCATAAACGATATCTCGACGCGCATATGAAAAGTCATCGAGAGAAAACTTATGCTTGTGATTTGTGCGATTTTAAAGCGACGAACAAAGTCTCTCTTGAGTGTCACAAGGTTACCCATAGTGAGAAAACATTTGCTTGTGATTTGTGTAATTTCAAAACCGCTCATAGAAAATATCTCAACATCCACATGACTATTCACACTGGCAAAAAACCGTTCGCTTGTGATTTGTGCGATTTTAAAACTGTGCATAAACAGAGACTCGAGCGCCATATAGGTAAACACGCCGAAGGCAAAAAGAAACCAGTTGTAAATTCGGAAAGTCCTAAAATAGGTCATTTTTGTGCAGTTTTAATCAAGGAAGAAGTTGACTCCAAAGCTCATCTTGGTGACattaaaagtgaaacctgtaacaCAACTGCTTGTGACATACCTCAAACTTATACTTTTGAAGAATCAAACACTAATgttagtttaaatttgaagCAGGGTGTTAAAGAAGAGCCTGAAAATGTTACAAAAGTTGAAATCAAAATCGAAGCTGATGTTAATCCAAGTATTGTTAAGCATGATTTAATGGACGAATTCAAAAAGATAGAGCCAGAGGAAGTTGTAATTAAAGAGGAGTTTCAAACAACCCCCGAAAACAATCCCGAACCACAAGCAAACGAGCATTCGGAAGGAAAACGTTATACATGTAATcggtgtaattttaaaagtgccCACAGAAGTAGCATCCGAACCCATATGCTAAGGCATACCGGAGAAAAGCCGTACGCTTGCAGTTTATGCGAATATAAAACCCGTCACAAAGGTAGTCTTAAAACGCATATGACAACGCACACCGGAGAAAAACTATTCGCATGCGATTTATGTGACTATAAAAATGCGTGTAAAGTGAACCTTGGACACCACATGAATAAGCACACCGGCAAAAAATCGTTTGCTTGCGGTTTATGCGAGTATAAAACCGCATACAAAGCGGGCCTCAAGAAACATCAAAGAGTGCACACGGGTGAAAAGCCATACTCTTGTAACTTCTGTGAGTTTAAGTGCGTACATAAAGTAACGCTTAGAAAGCATTTGAATAAGCACACGGGTGAAACTTCATTTGCTTGTAACATGTGTGAAGTCAGCGATCTTAAAGATTGCGTGTGCAAGAAAGGTGTGAAGAAAGTACGTTCGTGTGAGTTATGCGAGTATAAATGCGAACATAAGTATGTGCTTAAGAAACATATAATGGCGATTCACACCGGTGAAAAACCGTACGCTTGCGATTTATGCGAATTTAAATGTGTGGCTAAGAAGTACCTTAAATCTCACATGCTTTGTCATGGCACAGGGGATAAACCGTTCGCTTGTGATTTGTGCGATTTTAAAACCGTACGCAAGTATTACCTCAAACATCATGTTATTTCCGTTCACGCCGTAGATAAACCGTTCGCTTGTgatgtttgtgaatttaaaaccacCCGGAAAAATATTCTCAAACGACATATGCTGGCTCATAATGGAATATTCTTCACCTGTGATTTTTGCGAGTTTAAAACCATGCATAAAGACAATCTCAAGGCGCACCTCGGTTCTCATACCGGTGAAAAGCCGTTCGTTTGCAACGTGTGCGGACATAAATTTCCGCACAAGCGATATCTCGACGGGCATATGAACTGTCATCGGGAAAAAACGTACGCTTGTGACTTGTGCGATTTTAAAGCGACCTGCACGGGTTACCTAAATAAGCATATGAAGATTCACGCAAGGAAGGAGCTGCTTATTTGTGAAGTGTGCAAGTTTAGAACTATTAAGCAGAAGGCTTTTAAAGAACATAAGTGCACCGTAACATCAGTAAATTTAACTGGGCTACAAACTTAA
- Protein Sequence
- MSEVNSESNKIDSFYSVLIKVEADTEPHLGDIKSETLNTTACDIHQTYTFEESNIHVRLNFKQGIKEEPEDVYDNTSTKVEIKIEADDNPGIIEHNLKEEFKYIEPEEVVFKNEFETAAENNPKSQANDDSEGKHYACNLCNFKSAHKGSLRSHMLRHTGEKPFACDLCDFKTVRKYYLKQHVISVHTEEKPFVCDVCGFKTTRKHSLQRHMLAHNGIVFTCDFCEFKTVHKNNLKTHVGFHTGEKPFICDVCGHKFPHKRYLDAHMKSHREKTYACDLCDFKATNKVSLECHKVTHSEKTFACDLCNFKTAHRKYLNIHMTIHTGKKPFACDLCDFKTVHKQRLERHIGKHAEGKKKPVVNSESPKIGHFCAVLIKEEVDSKAHLGDIKSETCNTTACDIPQTYTFEESNTNVSLNLKQGVKEEPENVTKVEIKIEADVNPSIVKHDLMDEFKKIEPEEVVIKEEFQTTPENNPEPQANEHSEGKRYTCNRCNFKSAHRSSIRTHMLRHTGEKPYACSLCEYKTRHKGSLKTHMTTHTGEKLFACDLCDYKNACKVNLGHHMNKHTGKKSFACGLCEYKTAYKAGLKKHQRVHTGEKPYSCNFCEFKCVHKVTLRKHLNKHTGETSFACNMCEVSDLKDCVCKKGVKKVRSCELCEYKCEHKYVLKKHIMAIHTGEKPYACDLCEFKCVAKKYLKSHMLCHGTGDKPFACDLCDFKTVRKYYLKHHVISVHAVDKPFACDVCEFKTTRKNILKRHMLAHNGIFFTCDFCEFKTMHKDNLKAHLGSHTGEKPFVCNVCGHKFPHKRYLDGHMNCHREKTYACDLCDFKATCTGYLNKHMKIHARKELLICEVCKFRTIKQKAFKEHKCTVTSVNLTGLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -