Mvil079327.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720425.1:48561180-48568427[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.012 2.7 11.0 2.9 1 23 66 89 66 89 0.97 2 13 2 4.5e+02 4.0 4.4 1 23 216 239 216 239 0.95 3 13 7.5 1.7e+03 2.2 0.3 12 23 328 339 317 339 0.87 4 13 0.11 25 8.0 0.6 1 23 421 443 421 443 0.93 5 13 0.01 2.3 11.2 0.8 1 23 447 469 447 469 0.97 6 13 0.87 2e+02 5.2 0.5 1 23 475 498 475 498 0.90 7 13 0.29 65 6.7 5.6 1 23 504 526 504 526 0.93 8 13 0.0039 0.88 12.6 1.3 1 22 532 553 532 555 0.90 9 13 3.2e-05 0.0073 19.1 3.4 2 23 563 584 562 584 0.97 10 13 1.3e-06 0.00029 23.5 0.5 2 23 590 611 589 611 0.97 11 13 1.4e-05 0.0032 20.2 1.6 1 23 617 639 617 639 0.98 12 13 1.2e-05 0.0027 20.5 0.2 1 23 645 667 645 667 0.97 13 13 0.0045 1 12.4 0.2 1 21 673 693 673 694 0.95
Sequence Information
- Coding Sequence
- ATGACCGACAGAGTTCAAGGTGGAACAAGTGTGACAGCAACGTATTATCGTGACTTCATGCAGAAATTACGCAGAACAATGTACAAAAGCCGATCTGACTTGCATGGTAATGCATGCCTGCACTTGGGGAAAGTTGTGACTGATTTGCTGCATCGGTGCGAAGAGAAAACGCCCACTATTAAAAGCAACTTTGTATACAAATGCCAGCATTGTAATTATACAGCCGAGGACAAAAATACTTTACTGGAGCATTTAAAACAGTTTCATGAAGGAGAGCCAATTTTATTTACTCGATCGATTAATACTGGCATGACTGACTTATCTAAAAAGACACtacataaagaagaagaaatatgcaAACACAACAGCATAAAAAGAATCAAGTCTGACAGTAAATCGAATGTTATACACGATGAGGATGATGTTATAGAAGTTTCAGCCGAAGCTACACGAACAagctcgattcttcaaaatttattggaaagaaaaaatacagtCGAACCCAGCTTTGAAAATTTCATGTTCAGATCTAAAAAATCAAGTGACGAACTAGAGGCACAGTTTTTTGATGTTACACATATAAAAGTCGAATGGGAAGATAACGATGAAgatataaaatcaaataatatttctCTGAAGAAGATACATAAGTGCAAATTATGTAGAGATAAATTTCATTCGTTAACCGATCTTCAAGTACATAATAATATGGAACATCCGATTTTGGGTAAGAGACAACCTGTACCGAAAGGAAACATGTCAGACGATTCGAGTGAATTTAGCGACGATGATGAAAGTGGTAATGCAGTGTTGATGAGTACAGACGAGGACAGTAGTGAAGAAGTACTGGAAATCGGGTTGGATAGCGACAAAAGCCTCGCTactgaagaattaaaaaagttatatgCTAATCCTCAATCGGACAGAAATTCACAGGATTTGGATCTGTTTTGTGTTATATGTAACAATGGCAAGAAGATGACGCAACAACAGTTAGTAAGACATTACAAGAAGCACGAGAAATTATCTGACACTTTTAACGAACAAGTCTTAACAACTTTAACAAAGATTAAAAAGGAACCTAAACCCGAAGATGAAACCCCACAGTATTACTGTCACATATGTAAAGATGATAAGAAAATGAAGAGGAGCGAATTGAAAGAACATTATCAGGCTGTTCATGATGGGAAGATTACTAATAAGAAACAGTTTTTCAGACGGGCTCGTTCCAAAAAACCTCGATCGCCAAGACCTGAAGTGTTTAGGTGCGAAATTTGTTCCGAAGAATTTCCGACTCGGCAAATTTTAGACAAGCATTTTGAAAAGCACAACGATCAATATTCCTGTGACATTTGCgatacgggttttaagaaactGATCGATTATACTTTCCATATGCAAAGTCATAGCGAAGACAAACTATTTAAATGTCCTTTATGTCAATTTGTAACCGATAAAGGTTATTTGGTAAAATCGCACTTATATTCGGTTCacgaacaatttaaaaaatataaatgtgaaGTCTGTCATAAAGGGTTTGCAATATTTACTCATTTCCAAGAACATAAATATTTCCATAGCGGAGAGAAACCGTTCCAGTGTGATATTTGCGGCCAGAAGTTCATGTATACAAGATACTTGAACTCGCACAAAGTTCAAATGCACAAGAGTGCCCAAAAAGGCATCGAGTGTAAACTTTGCAAAAAGGTTTACTCGCATAGGAACAGTCTTAATACTCACATGAAATCCCATACGGGTGTAGTGTCCGTCTGTGATGTGTGCGGGAAGACTTTCAGTAGCAACGAGAAATTACGTCTACATTATCGCATCCACACGGGAGAAAAACCGTACAAATGCGACTACTGCGACAAGATGTTTAAAACAAGCTCATATCGAGCCGAACACGAACGAATTCATACAGGCGAGAAACCGTACGAGTGTCCATATTGCGGAAAAGGTTTTTCACAACGTACGAGTATGGTTATACATTCACGTGGACACACCGGTGAAAAACCTTATATATGCCATTTATGTAACAAAGGATTCGCCGCCAAGTCGATGGTTACTATTCATTTGAAGTCTTGTAAAGGCATCATACGTCGTAATGAGAGTGATGATTAA
- Protein Sequence
- MTDRVQGGTSVTATYYRDFMQKLRRTMYKSRSDLHGNACLHLGKVVTDLLHRCEEKTPTIKSNFVYKCQHCNYTAEDKNTLLEHLKQFHEGEPILFTRSINTGMTDLSKKTLHKEEEICKHNSIKRIKSDSKSNVIHDEDDVIEVSAEATRTSSILQNLLERKNTVEPSFENFMFRSKKSSDELEAQFFDVTHIKVEWEDNDEDIKSNNISLKKIHKCKLCRDKFHSLTDLQVHNNMEHPILGKRQPVPKGNMSDDSSEFSDDDESGNAVLMSTDEDSSEEVLEIGLDSDKSLATEELKKLYANPQSDRNSQDLDLFCVICNNGKKMTQQQLVRHYKKHEKLSDTFNEQVLTTLTKIKKEPKPEDETPQYYCHICKDDKKMKRSELKEHYQAVHDGKITNKKQFFRRARSKKPRSPRPEVFRCEICSEEFPTRQILDKHFEKHNDQYSCDICDTGFKKLIDYTFHMQSHSEDKLFKCPLCQFVTDKGYLVKSHLYSVHEQFKKYKCEVCHKGFAIFTHFQEHKYFHSGEKPFQCDICGQKFMYTRYLNSHKVQMHKSAQKGIECKLCKKVYSHRNSLNTHMKSHTGVVSVCDVCGKTFSSNEKLRLHYRIHTGEKPYKCDYCDKMFKTSSYRAEHERIHTGEKPYECPYCGKGFSQRTSMVIHSRGHTGEKPYICHLCNKGFAAKSMVTIHLKSCKGIIRRNESDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -