Basic Information

Insect: Melanotus villosus
Gene Symbol: PRDM10
Assembly: GCA_963082815.1
Location: OY720422.1:45125682-45141634[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4e-06 0.00091 22.0 1.0 2 23 485 506 484 506 0.96

2 13 0.64 1.4e+02 5.6 1.8 2 23 538 561 537 561 0.75

3 13 0.001 0.24 14.4 0.5 1 23 578 600 578 600 0.97

4 13 0.031 7 9.7 0.1 2 23 612 633 611 633 0.91

5 13 8.5e-05 0.019 17.8 0.3 1 23 646 668 646 668 0.99

6 13 0.087 20 8.3 2.9 2 23 677 698 676 698 0.97

7 13 0.052 12 9.0 1.3 1 20 705 724 705 727 0.93

8 13 0.0072 1.6 11.7 2.5 1 23 733 756 733 756 0.95

9 13 0.00055 0.12 15.2 2.0 1 23 761 783 761 783 0.97

10 13 2.3e-05 0.0053 19.6 2.0 1 23 789 812 789 812 0.94

11 13 0.024 5.4 10.1 1.1 1 23 848 871 848 871 0.97

12 13 0.00011 0.026 17.4 2.3 1 23 893 916 893 916 0.97

13 13 0.003 0.67 13.0 2.6 3 23 956 977 955 977 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4e-06	0.00091	22.0	1.0	2	23	485	506	484	506	0.96
2	13	0.64	1.4e+02	5.6	1.8	2	23	538	561	537	561	0.75
3	13	0.001	0.24	14.4	0.5	1	23	578	600	578	600	0.97
4	13	0.031	7	9.7	0.1	2	23	612	633	611	633	0.91
5	13	8.5e-05	0.019	17.8	0.3	1	23	646	668	646	668	0.99
6	13	0.087	20	8.3	2.9	2	23	677	698	676	698	0.97
7	13	0.052	12	9.0	1.3	1	20	705	724	705	727	0.93
8	13	0.0072	1.6	11.7	2.5	1	23	733	756	733	756	0.95
9	13	0.00055	0.12	15.2	2.0	1	23	761	783	761	783	0.97
10	13	2.3e-05	0.0053	19.6	2.0	1	23	789	812	789	812	0.94
11	13	0.024	5.4	10.1	1.1	1	23	848	871	848	871	0.97
12	13	0.00011	0.026	17.4	2.3	1	23	893	916	893	916	0.97
13	13	0.003	0.67	13.0	2.6	3	23	956	977	955	977	0.97

Sequence Information

Coding Sequence: ATGGAAAGCGCCATTGAAGGGCTCCCTGATGGTGGTGGCACCATGATGGTTAACAATTTTAATCAAACCACATCGTGGAGTAACACACAAAATTCTGTATCTACAAATTCAAGTTCAACCCTTTTGTTTATCGCAgtagaataTGTAAAAGATGCCAATGAATATAAATTCCCCTCCGAAGTAAATTATTCACCGCAAGGTACTCCACCTTGTGGTGATTTTGAACAACATGTTAGTCCATTGGATCCCAACATGAGTTCGGCAGCACGTTACAGCCCAACCAGTCCATCATGTAGCGATGCGGACATTCAATATAATAATCCCGTCGTTGTGCAACAGTTAATATCGACTAATCCAAATCAACAGCTAATTAATTCCTCTAGAAATACTTATGCTGATAATCTGACAAATCCTGATGCTGCTTTAGAGAACATCAGCACTTCGCTTTGTAATTCGGATACCAATCTTTTAAAGCATGTGGTTGCCAATAGGTATTTGTTAAATCAGCAGAATGCTCCTGCAAATGTCCCAGCCAATGGTGTTCTGCAATTGGTACCTGATCCAGATGCGGAACAGGAAGTTGAGTTATTAATTACAGATCAAGCAACTGGTATTTCATATAATGTTAGTACTCAAGAGTATTTAGTTGAGCGTTGTTTAGCAGACGATCAACAACTTTTGGATGCATTAACACCGGGTCCTTTGTTGGATTCAGATTTATTAGCTTTGGACGACTCGACGTTGAAATCTCAGTTGCCTGACATCGTCGAATCTGTTAGTAATCCGCAAAGTTTAGATGCTAATTCATTGGTTCCAAATAATACAGTTATGCCGGGTTCGAGGGCAAACCAAAATGTGAcccaaatattaattaaaactgaagatGTCGAGGATGATTCAGAAGCCCTTTTCAATCAAGAAAGTATAAGACGATCGCAACGTCAGTTAGAACTTCGATCTACACAAAATGAGGAACAAATATtaactcAAGTGCATGCAATTACCGATAAACCGGTAGAATCTCGAGCGAGAGCAACATTGCCAGCTGCATATTTAGCTATCATAAAAAAAGGGgaagGAGAGTATGGAGTATTTGCTCGCAAAATGATCCCGAAACGTACGCAGTTTGGACCGCTTGAAGGTTTACTACTCGTGAATAATCGTCAGGTTGACAAAAATGGATTGCAGTTACTTTTGGAATGTGACAGTGGAGCTGTACATCGGTTAGATATTACTGATGAAAACGTTGCCAATTGGATGTGTTTTGTCAGAAGAGCTACTACTTATACAGACCAAAATTTGTTGGTTTCCCAGCAAGGGAATGCTTTGTATTATACGACTACTGCAAATATTTGGCCGAAGCAGGAGCTGTTGgtgGGTTATAGTACGATGTATGCAAAAAAGCACAATCTACCCCTTCTACAGCCAGTGCCGCATGTAGAAAATGATTGGCCCTGTTTTGAATGTGACAAGCATTTCTCAACGTCTGAAGAACTACAAAAACATTTGAATGTGCATGATGAATCTAAAAAGGGTGCAGTGAAGCTGAAAAAGAAGGCATTTAAAAGCAAGCGGAAGAAGTTAcgaaaaaaataccaaaagcaTATCTTGGagtgtaaaatttgtaaaaccgTATTTTCTTATCCTGAATATTCTGTACTAAGAAAGCACCTGATCATGCATGATATTGATACTAATGGAACTTTTGAAGATAAATTTACAGTTATTAGttacaatTGTGAGAAGTGTAAGATGTCATTTGACTCTGAAGCTCTTTTGAAAATACACAGGCTGTTGCATAAACCAAATACCGACGAAACATCACATGGCTTAATTTGTCCAGATTGTCAAAACGAATTTGATACTCAGCAACAACTAGTTGAACATGTTGGTCAACATCGTAGTGATCAGCTTGTCTCGGAATCCAAAGGAGGTTATAAATGCCCAGTTTGTTACAAAATGTTTGCTTCACTTGATCGGATACAAcGACATATGTTAGTACATGGTTCTGAGGAATCTAAACCGTTGAAATGCGACACATGTAATAAGagatttttgaataattctgcTCTCGCTTGCCATTTGAAAACTCACAGTACCGATAAAAAGATTTTCGAGTGTCCTATGTGTAAAGAAAGTTTCCATCACGTTTTGCAATTGAAAGTGCATGTTCCGCAACATTGCGAAGATGGTAAATACACTTGTCCTCACtgcaaaaaaatctttaaagaatACAGTATTATTCGCAAACATATTCGAGCTTTTCATTGCGAACGGAAACATAATTGTCCACATTGTGCGAAACCGTTTCCTACGTTGGATAAGTTGCGTATGCATTTATTACGCCATTCGGACCATAGGGAGTTTTTATGCGCCGATTGTGGAAAACAGTTTAAACGGAAGGATAAATTAAAAGAGCATACCAAAAGGATGCATTCGGAAGAAAGGGAAAATAACGTTCCAAAGCCCACAAAAGTTAATATGCAGAGCAATAAAAAGTTTACGCCTAAAGTTCAGCCTACCGATTAccacagatttatttataaatgtcatGCTTGCCTCGTAGGATTTAAAAGAAgagGTATGTTGGTAAATCACTTGGCCAAACGTCATCCGGACATCAGTCCAGACTCTGTACCTGAACTTAACTTACCAATCCTGCGTACCACCCGTGACTATTATTGTCAGTATTGCGACAAAGTTTATAAAAGTAGCTCGAAGCGAAAAGctcacattttgaagaatcatCCCGGTCAAGCTCTACCGATGAGTAACAGACGGCAAGGAGCTTATCCCGAAGTTGCAGGTTTACCGAATCCAACATTTTCGCAGACGGTAGGGAGCATCACAACTCATCCGCAAGCTTGCCAGTGGTGCCACAAGCAGTATGCAAGCAAAGCTAAGCTGTTGCAGCACCAACGAAAAAAACACACTGAATTACTTCAGATTCAGTCTAATCAAGTTAAAAGTAATACTCATCAAAATCAAGTCGTTCCGCAAGGTCAAGAAGTGGAAGAAATTATCATCGATACTCATTCATTTAAAAGAGACTTTAAGGTATCAGATGAAGAATTGTTATCGGAAGTTGTGGCTTTAAATGATGATAGAGAAGACGAACAGTACTATCAGATAATATCCGTTCCTCCAAACGACTCGGTCACTTTTAATCATTCGAGCGAAATTAATCACGCGCCAGATTCACGTTTGTATCGTTTATTGACTACTGGAAATGgtCTTTTACCTCCACGCTGA
Protein Sequence: MESAIEGLPDGGGTMMVNNFNQTTSWSNTQNSVSTNSSSTLLFIAVEYVKDANEYKFPSEVNYSPQGTPPCGDFEQHVSPLDPNMSSAARYSPTSPSCSDADIQYNNPVVVQQLISTNPNQQLINSSRNTYADNLTNPDAALENISTSLCNSDTNLLKHVVANRYLLNQQNAPANVPANGVLQLVPDPDAEQEVELLITDQATGISYNVSTQEYLVERCLADDQQLLDALTPGPLLDSDLLALDDSTLKSQLPDIVESVSNPQSLDANSLVPNNTVMPGSRANQNVTQILIKTEDVEDDSEALFNQESIRRSQRQLELRSTQNEEQILTQVHAITDKPVESRARATLPAAYLAIIKKGEGEYGVFARKMIPKRTQFGPLEGLLLVNNRQVDKNGLQLLLECDSGAVHRLDITDENVANWMCFVRRATTYTDQNLLVSQQGNALYYTTTANIWPKQELLVGYSTMYAKKHNLPLLQPVPHVENDWPCFECDKHFSTSEELQKHLNVHDESKKGAVKLKKKAFKSKRKKLRKKYQKHILECKICKTVFSYPEYSVLRKHLIMHDIDTNGTFEDKFTVISYNCEKCKMSFDSEALLKIHRLLHKPNTDETSHGLICPDCQNEFDTQQQLVEHVGQHRSDQLVSESKGGYKCPVCYKMFASLDRIQRHMLVHGSEESKPLKCDTCNKRFLNNSALACHLKTHSTDKKIFECPMCKESFHHVLQLKVHVPQHCEDGKYTCPHCKKIFKEYSIIRKHIRAFHCERKHNCPHCAKPFPTLDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHTKRMHSEERENNVPKPTKVNMQSNKKFTPKVQPTDYHRFIYKCHACLVGFKRRGMLVNHLAKRHPDISPDSVPELNLPILRTTRDYYCQYCDKVYKSSSKRKAHILKNHPGQALPMSNRRQGAYPEVAGLPNPTFSQTVGSITTHPQACQWCHKQYASKAKLLQHQRKKHTELLQIQSNQVKSNTHQNQVVPQGQEVEEIIIDTHSFKRDFKVSDEELLSEVVALNDDREDEQYYQIISVPPNDSVTFNHSSEINHAPDSRLYRLLTTGNGLLPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -