Mvil080332.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720426.1:219074-220807[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.002 0.44 13.5 0.6 1 23 144 166 144 166 0.98 2 15 0.33 74 6.5 5.7 1 23 172 194 172 194 0.97 3 15 0.00024 0.055 16.4 0.6 1 23 200 223 200 223 0.94 4 15 0.0045 1 12.4 1.4 1 23 229 251 229 251 0.97 5 15 0.0086 1.9 11.5 0.4 1 23 257 279 257 279 0.98 6 15 0.00021 0.046 16.6 1.0 1 23 285 307 285 307 0.98 7 15 0.0028 0.63 13.0 1.2 3 23 315 335 313 335 0.96 8 15 0.031 7 9.7 0.3 1 23 340 362 340 362 0.96 9 15 0.0008 0.18 14.7 1.7 1 23 368 390 368 390 0.97 10 15 0.0075 1.7 11.7 2.8 2 23 411 432 410 432 0.96 11 15 0.0031 0.7 12.9 0.1 1 23 438 460 438 460 0.96 12 15 0.0029 0.65 13.0 0.9 2 23 466 487 465 487 0.96 13 15 0.0028 0.63 13.0 4.7 1 23 493 515 493 515 0.98 14 15 0.00068 0.15 15.0 0.2 1 23 520 542 520 542 0.98 15 15 0.12 28 7.8 1.9 2 23 549 570 548 570 0.95
Sequence Information
- Coding Sequence
- ATGTCTGAGGTAAATTGGGAAAGTAACACAACCGGTAACTTTGATGCAGTTTTCATTAAGGAAGAAGTCGACTCTGAAACTACAGTGGACAACATTAAAATCGAAATCTGTAACGTGAGTGCTTTTGATATTCCTCAAACACATAGCTTTGATGTGACCAACACTAACGTTACCTTAAGGCAGGCTATAAAACTTGAACCTGATGATGTAAGCGATGTCACGACGCATGTCGACGAAAACGCACATGTTGATTCTACACCGAACCTATGTGTTATTAAGGAGGAATTGAGGGATGATCCGGAAATCACCGGTAACATTGAACACGATGAAGTCGTAATAAAAGACGAAGTAACGGATATCGATATTCAGGAGAAAGACAACGAAAAGCTTGAACCGGCTGTTGAAGAACCTAAAAGAAAAGACAAACGATTCACATGCGAATTATGCGATTTTAAAAGCGCCTACCCCAATAATCTCCGATTGCATCTGAAGCTTCACTCAGGCAAAATGAAGTTCTCATGTgatttatgcgaatataaatgtttacataaatatagGCTTAGGGAACACATGCGTGTTcacacaggagaaaaaccatttgcttgcgAATTATGCGATTTTAAGACGACTTACAGCAGCAATCTAAAGATTCACATGGCTAACAATCACACAGGCAAAAAGgagtttgcttgtaatttatgcgaatataaaaGCGCACTTAGATACCGTCTTAAAAACCATATGCGAACACAcgaaaccgaaaccgaattCACTTGCGAATTGTGCGATTTCAAAAGTGAGTCGCGTAACGATTACGAAATCCACATGAGTATCCACACCGGCAAACAAATTTACTTCTGCGAGTTATGCGATTATAAAAGCATACGCGAATACGGGCTTAAAAAACACATGCTTACGCATACGGATGATAAACCGTTAGCTTGTAACGTTTGCAGTTTTCGTACGGCAAGTAAAGCCACGCTTAAGCACCACATGATTAGCCACAACGAAAAACTATTCGCTTGCGACGTATGCGCCTTTAGAACCGCCTACAAAAATAATCTAAAGAGCCACACGATTATTCACAGCGGTGAAAAACCGTTCGCTTGTGATTTGTGCGATTTTCGAACAGTGCGTAAGCAGAAACTCAAACGTCATATCAGTAAACACgccgaagaaaaagaaaagccCATTAAAACCGAGAATCGCGTGTACGAAAGGAAAACGCTTTACTGTGATTTCTGTGAGTTTAAAACTAAACGTAGGTATAATCTCAAGTTACACTTGTCGAAGCACACCGGTGAAAAACCGTACGCTTGCGATATATGCGAGTTTAAAACCGCTCGTCGAATTGCCCTTACAAACCACATGCTCGCCCATCAAGGTATATTCCTTTACTGCGATTATTGTGATTTTAAAACCGCTAGTAAGAAAAGCCTCAAAATGCATGTGCTTAGTCATACTGGTGAGAAGTCGTTCGTTTGTAATATGTGTACGTATAAAACGACGCATAAACACTTGCTCGATCGGCATATGGAGATTCATAGGGAGAAAACGTTCGTTTGTGATTTGTGCGGGTATAAAGCGGCACGTAAAGACTATCTTGATAATCATTTGAAGGTTCATGCGAGGAGGGAGCTACTTATTTGTGAAATATGCAAGTTTAGGACGATTAAGAAGAAGACGTTCAAGGAACATAAACGTGCTCACCAAGCTAGCACGGCTTCTTCGTAG
- Protein Sequence
- MSEVNWESNTTGNFDAVFIKEEVDSETTVDNIKIEICNVSAFDIPQTHSFDVTNTNVTLRQAIKLEPDDVSDVTTHVDENAHVDSTPNLCVIKEELRDDPEITGNIEHDEVVIKDEVTDIDIQEKDNEKLEPAVEEPKRKDKRFTCELCDFKSAYPNNLRLHLKLHSGKMKFSCDLCEYKCLHKYRLREHMRVHTGEKPFACELCDFKTTYSSNLKIHMANNHTGKKEFACNLCEYKSALRYRLKNHMRTHETETEFTCELCDFKSESRNDYEIHMSIHTGKQIYFCELCDYKSIREYGLKKHMLTHTDDKPLACNVCSFRTASKATLKHHMISHNEKLFACDVCAFRTAYKNNLKSHTIIHSGEKPFACDLCDFRTVRKQKLKRHISKHAEEKEKPIKTENRVYERKTLYCDFCEFKTKRRYNLKLHLSKHTGEKPYACDICEFKTARRIALTNHMLAHQGIFLYCDYCDFKTASKKSLKMHVLSHTGEKSFVCNMCTYKTTHKHLLDRHMEIHREKTFVCDLCGYKAARKDYLDNHLKVHARRELLICEICKFRTIKKKTFKEHKRAHQASTASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -