Mvil053194.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720422.1:34609007-34622190[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.12 28 7.9 2.3 2 21 115 134 114 138 0.89 2 14 0.0096 2.2 11.3 0.1 2 20 142 160 141 161 0.95 3 14 0.086 19 8.3 3.3 1 23 169 191 169 191 0.97 4 14 4.1e-06 0.00092 22.0 0.3 2 23 199 220 198 220 0.98 5 14 2.3e-05 0.0051 19.6 1.8 1 23 354 376 354 376 0.97 6 14 0.045 10 9.2 0.2 1 19 384 402 384 404 0.97 7 14 0.0017 0.38 13.7 4.6 1 20 432 451 432 454 0.93 8 14 0.021 4.7 10.3 0.9 1 23 459 482 459 482 0.93 9 14 2.5e-05 0.0055 19.5 3.1 1 23 488 510 488 510 0.98 10 14 0.00037 0.083 15.8 1.2 1 23 517 539 517 539 0.98 11 14 0.0011 0.25 14.3 0.7 3 23 547 567 545 567 0.97 12 14 0.0016 0.35 13.8 0.3 1 23 573 596 573 596 0.94 13 14 0.0019 0.44 13.5 0.8 1 23 608 630 608 630 0.97 14 14 0.19 44 7.2 0.1 2 22 699 719 698 719 0.94
Sequence Information
- Coding Sequence
- ATGGATGTAAACTCCGAACTTATATCTGTGGCTTCTGAGAATGTAACCTTAGCAGATGGTAACATTTACGAACAAATATATTTGGATATGAGGCAAGATGCATCAAACTGTGAACCTGTTCAAGTAGAGCAATTTAATACTACAACGGAGAATTCATTAAATGTCGTTTATGAACGAGACACACCATTACCACAAGATCCGTTAGTATATTCGTTAAAAGAGGAAACTAACCGAATATTAAACGCTAATGCGACGGAAGATGAAAGCATGGCTGTTGAAGCTCTACGTCAATTAGGAAGTAGCGCAGTTTACACGAAAATACCTCAGGATTTACCACTTTTGACTTGTTCTAATTGTGAAACACAATTTAGAACGACAGCTGATTTTCAAAATCATGCGAGCATATGTAAGCACAGTCAGTTAAAATGTTATATCTGTAACGAAGTATTTGAAAGGGCCATAGATTTTAATAATCATTTAGTATGTCACGCTGTTGAACGACCACACTCTTGTCGTATTTGTAGTACGTTATTCATTCATGAAAAAGACTTTATAGAACACCTGAATACACATGGAACTGTTGTAAATCTAAACCAATGTAGAGTATGTGGTGTAATATTTAACAGACCTTCTAGTTTAACGAATcatatgaaaatacataattaccaACCAGGAAGAgctcttttaaattcattcgtATTGCCAAAGACAGAAGTCGATAAATTAAATCAGGATGAAGGTGTTGCTTCAAGTAATATAATTACCTCGAAAAATATGGTATTACCAAGTTTAAATAATATAGCAAACCCCAATAATTGGGATGACTGCGACTTAACACAGGgagaaaattttaatgttgtaaatTTTGAAGTCGCTCAAGAAATGACGATTGGAAATTTCGAGGAGGATAAGAATGTAGTTGCGATTACTTACGAGTATGTGAATGATGATACAATTAAGTGCCCTGAGGAAGACATTTCTGATTTGCCCGAAGTAACATCTCCACAAactatttctgaaaaaaaaaaagtaaatgatAGTGGCACCAATAAAAGGCCACATGTTTGTAATTACTGTAATAAGCGATTCGCACGTGAGAAAGCTTTAATTTCACATTTGAAGTTACATTCCAATGTTTTAGAAATGTATTACCGCTGTAAGAACTGTGATGAATATCTTACTGATGAAGAGTCACTTGCAAAACATTCAACAAATTGTAGCGAAAAGCTCCAATATAATAATGTAAATGATATGCCGGATAATACACCTTCAAATCAAGAACAAttCTATAAGCATATTTGTTCTCAGTGTAGTAAACGTTTTTcaactaaacaaaaattacatcgTCATATGTGGATCCATCGCAAAAAGACATTTACTTGTGAAATTTGTGCTTGTTCGTTTGAAAAACAAGAACAGCTAGATGAACATCGTTTAGCAACACATCAAGGGAATTCTGCTTATGTATGTAATGAATGCGGTAAATGTTTCTGCAGTAGACAAGGACTTTGGGAACACAATCGTATCCATGGTGCAACTTCACACCTTTATAAGTGTGTGGAATGTTCCAAAACATTTTCAAGTAGGCAAGGTTACTTAATACATAAGCGAGCTCATAATGACGAACGACCGTATGGATGTCGATTTTGTTGGAAATCGTTTAGGGATGGAGGAACTTTAAGAAAACACGAACGAATTCATACAGGGGAACGTCCTCATGCATGTCCTTTATGTACGAGAGCTTTTAATCAAAAGGTCGTTTTACGAGAACACGTACGGTGGTTGCATGCAGCTAATTGGCAACCAAATGCAGATGATGTTTACGATTGTACTCTCTGTGAGCAGAAACTAACAGATAAGGATGATTTATGTGCACATATTGTTAAACATAGTGATCATTTAGCAATGCTTGCAAAAGATGCCTCaaagaataatataaaagtGATATCTAATATaacagataataataaaaataaacaaaaattaaaaatatatgataGTAACAAGGTAAAAATAGAAATCCTTCCGGCAGTTAGTGCAACCACTGATGTGTTAAATGTAACCGAAGAAGTTATTTCTGGTGCACCTTTCATTGAATGTGATCTTTGTGGtgataaatttttgaataaagatGATTTAACAGAGCATTTAAAAACTACATACTGCATTGATAAAGATGGTCAACTAATAGAAGAAACAGATAAGGTATTACATAGATGGGATGAATACTTTGAACACCTGTCAAATGTGAATGGACACATAGAAACAGCACCAGTGGGTAATCTGGGTAGAGAGCAAGATAAAGCTGTGGCACCCACAGTAGAAGATGTTAAAGAAGTAATAgcacaaatgaaaaataacaaagctccGGGAGGATCAGATTCCATTCCGATATGGAACGAAGAAAGGATACCACAAAAACTGAAGGACTGA
- Protein Sequence
- MDVNSELISVASENVTLADGNIYEQIYLDMRQDASNCEPVQVEQFNTTTENSLNVVYERDTPLPQDPLVYSLKEETNRILNANATEDESMAVEALRQLGSSAVYTKIPQDLPLLTCSNCETQFRTTADFQNHASICKHSQLKCYICNEVFERAIDFNNHLVCHAVERPHSCRICSTLFIHEKDFIEHLNTHGTVVNLNQCRVCGVIFNRPSSLTNHMKIHNYQPGRALLNSFVLPKTEVDKLNQDEGVASSNIITSKNMVLPSLNNIANPNNWDDCDLTQGENFNVVNFEVAQEMTIGNFEEDKNVVAITYEYVNDDTIKCPEEDISDLPEVTSPQTISEKKKVNDSGTNKRPHVCNYCNKRFAREKALISHLKLHSNVLEMYYRCKNCDEYLTDEESLAKHSTNCSEKLQYNNVNDMPDNTPSNQEQFYKHICSQCSKRFSTKQKLHRHMWIHRKKTFTCEICACSFEKQEQLDEHRLATHQGNSAYVCNECGKCFCSRQGLWEHNRIHGATSHLYKCVECSKTFSSRQGYLIHKRAHNDERPYGCRFCWKSFRDGGTLRKHERIHTGERPHACPLCTRAFNQKVVLREHVRWLHAANWQPNADDVYDCTLCEQKLTDKDDLCAHIVKHSDHLAMLAKDASKNNIKVISNITDNNKNKQKLKIYDSNKVKIEILPAVSATTDVLNVTEEVISGAPFIECDLCGDKFLNKDDLTEHLKTTYCIDKDGQLIEETDKVLHRWDEYFEHLSNVNGHIETAPVGNLGREQDKAVAPTVEDVKEVIAQMKNNKAPGGSDSIPIWNEERIPQKLKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -