Mvil081088.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720426.1:6443042-6445915[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.2 46 7.2 2.4 1 23 128 150 128 150 0.96 2 22 0.0018 0.41 13.6 1.2 1 23 156 178 156 178 0.96 3 22 0.013 2.9 10.9 1.8 1 23 184 207 184 207 0.97 4 22 1.7e-05 0.0039 20.0 2.9 2 20 245 263 245 266 0.93 5 22 0.0015 0.34 13.9 3.3 1 23 272 294 272 294 0.98 6 22 0.0094 2.1 11.4 1.1 1 23 300 323 300 323 0.97 7 22 8.8e-05 0.02 17.7 2.1 1 23 395 417 395 417 0.97 8 22 0.0017 0.37 13.7 0.4 1 23 423 445 423 445 0.98 9 22 0.0065 1.5 11.9 2.2 1 23 451 474 451 474 0.97 10 22 0.00027 0.062 16.2 2.6 1 23 546 568 546 568 0.98 11 22 0.0049 1.1 12.3 2.3 1 23 574 596 574 596 0.98 12 22 0.38 85 6.3 2.3 1 23 602 625 602 625 0.95 13 22 0.0054 1.2 12.1 5.5 1 23 656 678 656 678 0.98 14 22 0.21 47 7.1 2.1 1 23 684 706 684 706 0.98 15 22 0.0032 0.73 12.8 3.8 1 23 712 734 712 734 0.99 16 22 0.035 7.9 9.6 0.4 1 23 740 762 740 762 0.96 17 22 0.00092 0.21 14.6 4.9 1 23 768 790 768 790 0.97 18 22 0.24 53 7.0 3.3 1 23 801 823 801 823 0.92 19 22 8.1e-05 0.018 17.9 0.3 1 23 829 851 829 851 0.97 20 22 0.085 19 8.4 1.9 1 23 857 879 857 879 0.96 21 22 0.2 46 7.2 2.6 1 23 885 907 885 907 0.96 22 22 0.91 2e+02 5.1 1.7 1 19 913 931 913 934 0.93
Sequence Information
- Coding Sequence
- ATGCAGAACCCTAAGAAAGGTCTTGCAGAAtgttacattaaattaattcgtttgCCTAAAACTATAACCTCGACTCAGGCAGTAAATGTAAGTGCATTTAGTAGTTTTGAACCTGGAAATACGTCCCAGCATCGTATTTCATCCGGTTACAGTTTGACGTGCAAACCGCCCTTTGACATATTCAGCAACACCTCTGCCGAAAACACGTACGAGCCTTAcgtaaaaaacattaaaattgaaatcatTGAAGCAACAGATCGCATTACGGCAGTTAATCTTAAACAGCATTACATAGATGAGTCTGGAAGCACTGAAAATAGTATGCACAATGCCGATGTTTCTTCCCAAGAACACATGCTTAACCATGTTGAacaaaaaccatttgcttgtagtTTATGTGAGTTTAAAACCGTACATAAAAAACGTTTAAATGAACATATGTACGTTCATGCAGGCGATAAATCGTTTGCTTGTAGTTTATGCGAGTTTAAAACAGCATATAAGAAAAATCTCAAGAAGCATATGGAcattcataccggagaaaaacccTTTAAATGCGCTGAATGCGAGTATTCGGCAAGAGACAACAAGACGCTAAAAAATCATAACAAACGTAAACATACGTTTTTCATTATAGAAGAAGTTAACGTTCAAGCTGGAGTTGTTGAGGTAACGAACCAGAATATAAAAGTCGAGCCTGAAAATACACAGGAGGTTGAAACCGAAACTAACTCTTGTccaatttgtaacaaaaatttcGCTAATCAGAGTAATTTAAAACGTCATCTATCGTGCCACACAGGTGGGAAACGTTTCGAATGTGATGTTTGCCATAATCGTTACACGACTAAGAATTCGCTCGAATATCATTTAAAATCGCATACCGGTGAAAAACCGTTTCCTTGCACACAATGCGATTATTCGGCAAAGACGAACAAACAAGTACGAGAACATTACAATCGTATGCACATCAGGGAAGAAGTTAACGTCGAACCGCATTACGACAGTTTAAGTAACATTAAGAGTGAAACCCTTGAAGCAACCGATCCTTTTACGGCTGTATATCTCAAACAGAATTTAGAAGACGAATCTGAAAATACACCAATTGACGAGCACAAGAAAGTCGAGTTAAAAGAAGAAGCAGAGAACGTGATCgaagttgaaaataaaacaagcaaagCCTTTGTTTGTCCGACTTGTAATAAGAATTTTTCTTGTCCGAGTAAGCTAAAACGGCACATGGTGGTTCACACAGGGGAGAAACGTTTCGAGTGCGATATTTGTCAGAACAGTTATTCGGCTAAAGAGTCGCTGGAATACCATTTAAAATCGCATACTGGCGAAAAACCGTTTCGTTGCATGGAATGCGATTATTCGGCAAAGACGAACAAACAAGTACGAAAACATTACAATCGTATGCACATCAGGGAAGAAGTTAACGTCGAACCGCATTACGACAGTTTAAGTAACATTAAGAGTGAAACCCTTGAAGCAACCGATCCTTTTACGGCTGTATATCTCAAACAGAATTTAGAAGACGAATTTGAAAATACACCAAATGACGAGCACGAGGAAGTCGAGTTAAAAGAAGAAGCAGGGAACGTGATCgaagttgaaaataaaacaagcaaagCCTTTGTTTGTACGACTTGTAATAAGAATTTTCCTTGTCCGAGTAAGCTAAAACGGCACATGTTGGTTCACACAGGTGAGAAACGCTTCGAGTGCCATATTTGTCAGAACCGTTACACGGCTAAAGAGTCGCTTGAATACCATTTAAAATCGCATACTGGCGAAAAACCGTTTCGTTGCACGGAATGCGATTATTCAGCAAAGACAATGAAACTTGTGCGATATCATTATACACGCAGACATGCTTCGGTCGTCAATGAAGAGGTTAGCTTACACGAAGGAAGCGAGTCGTCAGGCGCAAATCACCCACTTCCCATTGAAGAGGACCGCGAATTTGAATGCCAAGTTTGCGAGTTTAAAACAACCCACGAAACCCACCTTAAAAAACATATGATTAAACATTTAAGCATCAAACTATATCCGTGTAGTTTGTGCAAGTTTAAAGCTACCGGCAAATACATCCTCAAACACCATATGCGTGTTCATACCGGTGAACAACCGTacacttgtaatttatgtgaatttaagACCGCTCATAGTAACAGTTTTAAACAGCATATGCGTATACATACAGAAGAAAAAGTATTCGCTTGCGGTTTATGTCGATTTAAAACGGCGTCTCAGAAAAGCCTAGAAATACATATGTTCGTTCACACAGGCGATAAACCATTCGCTTGTAGTTTATGTAACTTTAAGTGTGCGTATAAAAGCAGCCTCAAGAAACACATGCAAAAACATACGCAAATGTATACTACAGGTGAAAAAACGTTTGCTTGtagtttatgtaaatttaaaagtttgtataagCAAAACTTCAAGAAACATATGCGTATACATTCGGGGGAAAAACCGttcgcttgtaatttatgcgaatacaggagcgtaactaaaggcaatctcgaaaaacatatgaatgtacatacgggagaaaaaccgttcgCTTGTCATTTATGTGAATTTAAGACCGTAGATAAAGGCAAGTTGCAAACTCACGTTTTTAGTCATACAGGCGAAAAACCGTTCGCTTGTAATTCGTGTAGTTTTAGAACTTCGAATAGGAGGACGCTCAAGTATCATGTAAAGCTTCACACTAGGCGGAAAGTGTTTGTTTGTAAAGTTTGCAGGTTTAAAACGCCCGACAAACGGTTGCTTATGCAACATAATTGTTCGCCTGAAAGTAGTgctgttaacattaaaaacgAAGCCCTTGAAGTTGTTAATACTGCTGCTGATTCTTCGTAA
- Protein Sequence
- MQNPKKGLAECYIKLIRLPKTITSTQAVNVSAFSSFEPGNTSQHRISSGYSLTCKPPFDIFSNTSAENTYEPYVKNIKIEIIEATDRITAVNLKQHYIDESGSTENSMHNADVSSQEHMLNHVEQKPFACSLCEFKTVHKKRLNEHMYVHAGDKSFACSLCEFKTAYKKNLKKHMDIHTGEKPFKCAECEYSARDNKTLKNHNKRKHTFFIIEEVNVQAGVVEVTNQNIKVEPENTQEVETETNSCPICNKNFANQSNLKRHLSCHTGGKRFECDVCHNRYTTKNSLEYHLKSHTGEKPFPCTQCDYSAKTNKQVREHYNRMHIREEVNVEPHYDSLSNIKSETLEATDPFTAVYLKQNLEDESENTPIDEHKKVELKEEAENVIEVENKTSKAFVCPTCNKNFSCPSKLKRHMVVHTGEKRFECDICQNSYSAKESLEYHLKSHTGEKPFRCMECDYSAKTNKQVRKHYNRMHIREEVNVEPHYDSLSNIKSETLEATDPFTAVYLKQNLEDEFENTPNDEHEEVELKEEAGNVIEVENKTSKAFVCTTCNKNFPCPSKLKRHMLVHTGEKRFECHICQNRYTAKESLEYHLKSHTGEKPFRCTECDYSAKTMKLVRYHYTRRHASVVNEEVSLHEGSESSGANHPLPIEEDREFECQVCEFKTTHETHLKKHMIKHLSIKLYPCSLCKFKATGKYILKHHMRVHTGEQPYTCNLCEFKTAHSNSFKQHMRIHTEEKVFACGLCRFKTASQKSLEIHMFVHTGDKPFACSLCNFKCAYKSSLKKHMQKHTQMYTTGEKTFACSLCKFKSLYKQNFKKHMRIHSGEKPFACNLCEYRSVTKGNLEKHMNVHTGEKPFACHLCEFKTVDKGKLQTHVFSHTGEKPFACNSCSFRTSNRRTLKYHVKLHTRRKVFVCKVCRFKTPDKRLLMQHNCSPESSAVNIKNEALEVVNTAADSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -