Mvil080828.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720426.1:4416018-4420981[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0005 0.11 15.4 1.4 1 23 83 105 83 105 0.98 2 13 0.00014 0.033 17.1 0.2 1 23 111 133 111 133 0.99 3 13 0.00065 0.15 15.0 3.6 1 23 139 161 139 161 0.98 4 13 5.4e-05 0.012 18.4 1.0 1 23 167 189 167 189 0.96 5 13 0.001 0.23 14.4 1.9 2 23 196 217 195 217 0.96 6 13 0.00023 0.052 16.4 1.2 1 23 223 245 223 245 0.98 7 13 0.00094 0.21 14.5 2.2 1 23 251 273 251 273 0.97 8 13 0.00087 0.2 14.6 1.6 1 23 279 301 279 301 0.98 9 13 1.7e-05 0.0038 20.0 0.6 1 23 307 329 307 329 0.98 10 13 0.0017 0.39 13.7 3.3 1 23 335 357 335 357 0.98 11 13 0.0004 0.09 15.7 2.9 1 23 363 385 363 385 0.96 12 13 0.0004 0.091 15.7 6.0 1 23 402 424 402 424 0.98 13 13 0.00027 0.06 16.2 1.7 1 23 430 452 430 452 0.96
Sequence Information
- Coding Sequence
- ATGGATATCAAGCAAGAAATCGAAGATGTCGACGACGTCGAACTGGTTGACGACTACGACGATCCCCTTAATGTCGGTGGTATCGGAAACATAGAAACTGTAACAATCAAACCGGAAAATACGCTAATTAAAGAAGAGGCATACAATTCAGAGGACGATTCGAATGATGGCCGAGCCGAAGCGCACACGTTTGAAAGTATCTTTGTCAAATCGGAGCCGATCGAAAAAGCGTctaaagaaaaatcatttgtttgtttgtcgTGCGGTTTTAAATTCGACAGTAATTACAGGCTAAACCTTCACATGCGTAACCATACAGGCGAGAAGCCCTTCAAATGCACGATTTGTGATTATCGAGTGGCCTGGAAAGGCAATTTAATAAGCCACATGCGAATGCATACGAAGGAAAAACCGTTCAGTTGTAGCTTCTGCGATTATAAAAGCGTCACGAAATCGCATATAAATCGACATTTACGCATACACACCGGAGAGAAACCTTTTCTCTGTCATTTGTGCGATTATCGAGCGGCacagaaatcaaatttaaacatCCATATGATAACGCACAACACGGAAAAATCCGTTAGTTGTAGTTTGTGCGATTATAAAAGCGTCCACAAATCTTATTTAATAAGACACTTAAGTCGACACGCCAACGAACGGCCTTTCCCGTGTAATCTATGCGAATACAAAGGAGCTACGAAAGGGGCCTTACGGAAACACATGTGTACGCACACTAATGAAAAACCATTCGCGTGTAACCTGTGTGATTATCGAGCGACGGAAAAGCATTCGTTAAACACACACATGAAAAGCCACACCGGTGAAAAACCATTCAATTGCACTTTGTGCGAATACAAAGGCGCAACGAAAATGTACCTAAAACGACACATAAAAACGCATTATCAAGAAAGGCTGTACCCTTGCAACGTCTGTAATTATAAAGCGGCAGCGAAATCCAACTTAAAAAAACACATGAAAACCCACAGCGGTGAAAAACCGTACGTTTGTAATCGATGCGATTACAAAACGACACAAAAACATTCTTTAGACTCACACATGGTCAAACATACTGGCGAAAAACCGTTCCTTTGCACTGTTTGCGACCATCGAGCttcaagtaaatattatttatcgCAACATATGCGAACGCACTTGAGCCAAGCAGATTTAAACTCggatttaataaataacgagaaaATCTTCAGCTGTACTTACTGTGATTATAAAAGTGTATACAAATTCCATTTAAATAGGCATTTGAGGAAACACACAGACGAGAAACCTTAcgcatgtaatttatgtgattacAAAACGTCGAGGAAGTTTTCATTAAGGAAACATTTAGGGAGCCACATTGATGAAAGCGGAAATttattatttcaAGCTTACACCAGCATAACCAAAGAACGCCTTAAAGAATCGTTACTAGAAGGCGTTCTAAAAAAAGATGGAAATATTACCGAAGCCTTAACCCTCCTTAGCGATGAGGAAATGCGGAAACTTAACAATTTGGCGGAGACGATAAATCAAACTACATCGGAAATGGCTAAAGCTATGATTCCTTTCGGCTATGCATAA
- Protein Sequence
- MDIKQEIEDVDDVELVDDYDDPLNVGGIGNIETVTIKPENTLIKEEAYNSEDDSNDGRAEAHTFESIFVKSEPIEKASKEKSFVCLSCGFKFDSNYRLNLHMRNHTGEKPFKCTICDYRVAWKGNLISHMRMHTKEKPFSCSFCDYKSVTKSHINRHLRIHTGEKPFLCHLCDYRAAQKSNLNIHMITHNTEKSVSCSLCDYKSVHKSYLIRHLSRHANERPFPCNLCEYKGATKGALRKHMCTHTNEKPFACNLCDYRATEKHSLNTHMKSHTGEKPFNCTLCEYKGATKMYLKRHIKTHYQERLYPCNVCNYKAAAKSNLKKHMKTHSGEKPYVCNRCDYKTTQKHSLDSHMVKHTGEKPFLCTVCDHRASSKYYLSQHMRTHLSQADLNSDLINNEKIFSCTYCDYKSVYKFHLNRHLRKHTDEKPYACNLCDYKTSRKFSLRKHLGSHIDESGNLLFQAYTSITKERLKESLLEGVLKKDGNITEALTLLSDEEMRKLNNLAETINQTTSEMAKAMIPFGYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -