Mvil055835.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720422.1:58723982-58734468[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0011 0.26 14.3 0.3 3 23 373 394 372 394 0.93 2 20 3 6.8e+02 3.5 4.8 1 20 507 526 507 528 0.94 3 20 0.36 80 6.4 1.3 1 19 616 634 616 639 0.89 4 20 0.00039 0.087 15.7 1.8 2 23 737 759 736 759 0.95 5 20 1.9 4.2e+02 4.1 0.1 3 23 768 789 766 789 0.90 6 20 0.00029 0.065 16.1 0.2 1 23 805 827 805 827 0.98 7 20 0.0034 0.76 12.8 1.3 3 23 832 852 830 852 0.93 8 20 2.3e-06 0.00053 22.7 0.7 2 23 878 899 877 899 0.94 9 20 0.29 65 6.7 3.8 1 23 924 946 924 947 0.95 10 20 0.0012 0.27 14.2 0.7 2 23 959 980 959 980 0.98 11 20 0.0017 0.37 13.7 9.4 1 21 1015 1035 1015 1037 0.96 12 20 0.47 1.1e+02 6.0 0.6 3 23 1059 1079 1057 1079 0.96 13 20 0.001 0.24 14.4 1.4 1 23 1102 1124 1102 1124 0.98 14 20 0.00086 0.19 14.6 0.2 2 23 1138 1160 1137 1160 0.94 15 20 0.0018 0.42 13.6 0.1 1 23 1178 1200 1178 1200 0.94 16 20 0.011 2.5 11.1 1.0 1 23 1235 1258 1235 1258 0.95 17 20 0.04 9 9.4 1.0 3 23 1270 1290 1268 1290 0.96 18 20 8.1e-05 0.018 17.9 2.4 1 23 1302 1324 1302 1325 0.95 19 20 1.6e-05 0.0037 20.1 0.7 1 23 1333 1355 1333 1355 0.98 20 20 0.014 3.1 10.8 0.0 1 23 1376 1399 1376 1399 0.95
Sequence Information
- Coding Sequence
- atggATGACGAAAGTGATCAAGAGTTTAACTGCACACCTCCTAATATTAAAGAAGCTGCTAGTGAAGTAAGTCTCGACTTACTTCCAGAAAAATCACGAAAACTCTATCAAAAACAATATGACAAGTTTATAAATTGGTGCCGGGAGAAGAAAGTCCTAAGCTATAGTGAAAATGttcttttggtttacttttCGGAGATATCCAAGAATTATAAAGCTTCAACCCTATGGACTGTTTATTCAATGCTAAAAGCAACCCTTATACTGCATAACAACACTGACATTAGCAAATACCTGCGattaatggcatttttaaaacgtaaaattaaaGGATACAAACCGAAGAAGTCCCAAATCCTAAACAgacaacaaataaatgaattccTTCTCAAAGCTCCCGACGACCAATACTTGATGATGAAAgtGGCCCTAATTTTTGGAGTAGCCGGTGCTTGCTGCCGTGAGGAATTGTGCAACTTGAAATTAAACGATATACAAGATACTGGTTCTTGTTTACGTATAAGTATACgagaatcaaaaacaaaaattaaaagaatgtttACTATAATCAAAAATGAAGAAACCCATCccaactatttaaatttttaccgaAAGTATGCTGGCTTGCGAAAACCTGATACGGATCATGAGCGATTTTTTGTGTTCTATAATAGCGGAAAATGTACTAAACAAGTTGTAGGGAAAAATGTATTTGGAAAAATACCTAGTAAAATAGCAAGCTTTCTGCAATTGCCTGATTCACAATGCTATACTGCTCATAGTTTTAGGCGATCATCAGCTACATTGTTGACTGACGCAGAGAAATCGAAAAATGTTGACGAAATAGAATTGGATACTACAACCAGTTTGTGCCTTCTAGCAGATGTTTTCCATTCAAGAGGACAAGACACAAGAGAATTATGGGACAAAGAAGTAGGTATGCCTCGTTTTAAAGCGACAATGTCAGTAAACCGATTTGAAGAAATTCCTAGACGCATGAGATTTTATGACATAGGAACAAGAGATGAAAGAAAATCTGTCGATAAGCTAGCTTTGATTTCACAATtaaattTCGATACGAGTGAAGGAGCGACTCCAAAGGACGATGGACGGAACTGTCCGAAATGCGACAAAGTTTTTAGCAGCGTGGGAAATCGACGAAAGCATGAAGCAATGATTCATCGACGTCAAGAACAGGCTGCCAAAAACAATGAAAGAGAAAAATTGAAAGaaaaaagggATGGATCATCAACGTCACGTGGGACACCAACAATATCAGAAAATGATGTGGACTTACAGAAGATACAGTTTGCTGCTGGTTTACGATTGCAACAACGTTCAAGCGCTGAACACGTCGGCAATATGCCTTTAACCAAGGTAGAAGTTAGTTATTTAGAGAAATGCAAGACAATAGTAAAAATGACACAAACTTTAATTTGTGCCTGTCACGACGAACAATACGAAGATGTTAGAGATTTATAtgctcatttaaaaaaacaacgcACATGGTTTGCAATGTATACCTGTTATAATTGTTTGATTACGTTTGGCACTAGATCGACGTACATGAAACATTTTTGTCATTGCCCGAAGGAGCTTCTCCAAAATCTCAAACGTTTATCGGAGTCACCTGTTAATCCAGAAATTAAAATGAGATTGTATCAAAGTTTCAAATGTATAAGATGCAACTGCATTTTTAGTTTCCACGAAGATTTCTGTAGTCACTTTGACGTAGAACACATGGAAATGTTACAAAACTCTCCGCCTTACACTTGCTTATGTTCGCAATCGTTTAACGAAGTGGAAGATTATAAACAACATTTACATATTACGTGTTTCTTACGTTATTTTTGTGACGTATGCTTCGAGGTATTTCCAACAACGGATGCGTTTAGAATACACTGTGAAAAAATACATGATAATGCAGATGGCGACAGTTTAGAAATGTTCGATTACTTTCATAAAACTAAACTTGTAGACGAAGAAGCCGAACCAGCTGATAATATAACCAGGAAATCTTTACCACccgaaattaagaaaaaagaagaagtggaagagaCTCGTACCAGAAGAAAAACCATTCAGTTACCAATTGGTTCAGATGTAAACACTCCTCCTCACTTAGAAATCGAAGATCCAAATTATGGAGAAACTATGAAGGTTATAAATCCGCATGCTCTTCATAATATAAAGTCCTCGAAACCTACATCATGTCCTACTTGCGGCAAAGCGTATTCATCGTATCACAACATGTTGCGACATTATAAGTTATCACACGATGAATCTGGAAAGATTTTGGAATGCATATATTGCCAAGAAAGGTTCCGTTTAATTACAGAGTTAAAAGAGCACGAAGCAACTGTACATTCGTCTGACAAAAAGACCGAGGAAACAAccaaaaatcagtttaaattttcttgccCGGATTGTGGGAAATTATTACGGAATATGGATGACTGGACGAAACACATGGAATCGCATCCTAAGAAATGTTGTACCGAATGCGGAaaagaatttgttttacaatCTGAACTCGATCAACACCGAAGTGcccatttaaatattaaattgtataGGGATGCAAAAACCAAGGGTTATAAAAGTACAATGGTTATTAGTCCTCCTATTTTGATTtgtgaaatttgtgataaaacgTTCAGTACTAAAAGCGAATTGCGACAGCATAAATTGTTACATGAAAAAATGCCCGTGCTTAGCGCCCAGGATGGAGGTGATGCGATGGAGGAGAAGAAAGATCTGAGTAAAAAATACAGTTGCACTACATGTAATAAACATTACGTGAGTTACGGAGGAATATGGGATCATAATAGAAAACATCATGCTGGTCAACAAATAGCAAGAGAATACCCCCGACAATGTAATCGTTGTGACAAAACGTTGACGTCGCGTGGTGCTTGGGTGAACCACCAACGGATGCACGAACGTTTACAAAACGAAGGAATGGTATTGAAGAAATCGAATACTCCGGTAGCTCGACCTTCAAAAGCGAGAGCGATTAAAACCGACGATGATGAATCTTATTATACctgtaaaaaatgtttcaaagtgTTTTCTAGTAAATGCAACCTTAGAAACCACATGAAATGTCACGGTATTAATTTGAATCCTAGTCGAAGTAGCTCAAAGACCGgtaaaatcattaaaacatATTGGTGCGATATTTGTCATCAAGCTTGTCCAGGTTATGCAGAATTACAAGAACACAAACAGGAACATCGTCATGAAAACATGCCTAATTTGACTACTGAGGAAGATCCTCTTGATTTGAAAAGACCATTTGTGTTTACTTGTGATGTGTGCACATTAACATTTGCTACCACTTTTGCACTAAAAAGACATAAAGAAAAGCACACCGAGCATGGTGAAACTGTTGTAAAACAAGCTTCGGTTTATTGTAAGTATTGCAAGATACCATTCTCAAGTACAGGGGAGTTAAACGAACACATGACTAATGAACACGATCAAGTCGTTGTCAAATCTAAATCGAATAAACCACCATCCGGACGAAAGTTTCCGTGTCGTTTATGTAAGAAAGTGTTTGATAATGCTGGTGCACTTTCTTCACATCAAGGTTGGCATAAGCGTGGTAAAGTGGAAAAGAAGGCTCGATCGGAGGAGAAAATATTCAGAAAGATGGTAAATCAAATACCTAAATCGAACGCATCTCAGGCGAGCAGTAAATATCAGTGTTACACTTGCTCCTTGTGCTTTGTTAACGATACTGCCTTACAAATACACATTCTGGAAACACATAGAAATATTAATACCACAGTGTTGGCCATGAATTGTAACAGTTGCAAGCTAAACTTTGATTCAAAGTCCGCCTATGATACGCACATGCAACTACATCAAGTGGTTGAAAATCAAAAGTCTTTAAAACCACATCCTTGTAAGTACTGTTCAGCTGCGTTTAGTAGAAGTGACACTCTAAATGCGCACGTTAGGCAGCACCACAAGGAACATTACCGTGATACTTTTAAATGTACCCAGTGTGACCGTgtttttgataaacaaaatgCGCTTACAATACATCTTAAAGTACATGACCGCCAGCGATTGTCTGGAGATAGTAATACACCTAAACcgatacataataaaaatatatatttttgttctatttGTGATTTAGGGTTTGCTATTGCCAAAGATCTTCGCACTCACGTTGTTACTGCTCatccattttga
- Protein Sequence
- MDDESDQEFNCTPPNIKEAASEVSLDLLPEKSRKLYQKQYDKFINWCREKKVLSYSENVLLVYFSEISKNYKASTLWTVYSMLKATLILHNNTDISKYLRLMAFLKRKIKGYKPKKSQILNRQQINEFLLKAPDDQYLMMKVALIFGVAGACCREELCNLKLNDIQDTGSCLRISIRESKTKIKRMFTIIKNEETHPNYLNFYRKYAGLRKPDTDHERFFVFYNSGKCTKQVVGKNVFGKIPSKIASFLQLPDSQCYTAHSFRRSSATLLTDAEKSKNVDEIELDTTTSLCLLADVFHSRGQDTRELWDKEVGMPRFKATMSVNRFEEIPRRMRFYDIGTRDERKSVDKLALISQLNFDTSEGATPKDDGRNCPKCDKVFSSVGNRRKHEAMIHRRQEQAAKNNEREKLKEKRDGSSTSRGTPTISENDVDLQKIQFAAGLRLQQRSSAEHVGNMPLTKVEVSYLEKCKTIVKMTQTLICACHDEQYEDVRDLYAHLKKQRTWFAMYTCYNCLITFGTRSTYMKHFCHCPKELLQNLKRLSESPVNPEIKMRLYQSFKCIRCNCIFSFHEDFCSHFDVEHMEMLQNSPPYTCLCSQSFNEVEDYKQHLHITCFLRYFCDVCFEVFPTTDAFRIHCEKIHDNADGDSLEMFDYFHKTKLVDEEAEPADNITRKSLPPEIKKKEEVEETRTRRKTIQLPIGSDVNTPPHLEIEDPNYGETMKVINPHALHNIKSSKPTSCPTCGKAYSSYHNMLRHYKLSHDESGKILECIYCQERFRLITELKEHEATVHSSDKKTEETTKNQFKFSCPDCGKLLRNMDDWTKHMESHPKKCCTECGKEFVLQSELDQHRSAHLNIKLYRDAKTKGYKSTMVISPPILICEICDKTFSTKSELRQHKLLHEKMPVLSAQDGGDAMEEKKDLSKKYSCTTCNKHYVSYGGIWDHNRKHHAGQQIAREYPRQCNRCDKTLTSRGAWVNHQRMHERLQNEGMVLKKSNTPVARPSKARAIKTDDDESYYTCKKCFKVFSSKCNLRNHMKCHGINLNPSRSSSKTGKIIKTYWCDICHQACPGYAELQEHKQEHRHENMPNLTTEEDPLDLKRPFVFTCDVCTLTFATTFALKRHKEKHTEHGETVVKQASVYCKYCKIPFSSTGELNEHMTNEHDQVVVKSKSNKPPSGRKFPCRLCKKVFDNAGALSSHQGWHKRGKVEKKARSEEKIFRKMVNQIPKSNASQASSKYQCYTCSLCFVNDTALQIHILETHRNINTTVLAMNCNSCKLNFDSKSAYDTHMQLHQVVENQKSLKPHPCKYCSAAFSRSDTLNAHVRQHHKEHYRDTFKCTQCDRVFDKQNALTIHLKVHDRQRLSGDSNTPKPIHNKNIYFCSICDLGFAIAKDLRTHVVTAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -