Mvil079328.1
Basic Information
- Insect
- Melanotus villosus
- Gene Symbol
- -
- Assembly
- GCA_963082815.1
- Location
- OY720425.1:48573816-48585318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.7 8.4e+02 3.2 3.6 3 23 99 117 97 117 0.68 2 15 0.00088 0.2 14.6 3.6 1 23 120 142 120 142 0.97 3 15 0.0016 0.36 13.8 0.5 1 23 147 169 147 169 0.97 4 15 0.0011 0.25 14.3 0.2 1 23 175 197 175 197 0.99 5 15 0.0014 0.32 14.0 1.9 2 23 237 258 236 258 0.97 6 15 0.086 19 8.4 0.1 1 23 278 300 278 300 0.96 7 15 0.39 87 6.3 3.3 1 23 304 326 304 326 0.87 8 15 0.0013 0.29 14.1 1.2 1 23 332 355 332 355 0.98 9 15 0.00039 0.089 15.7 1.3 1 23 361 383 361 383 0.97 10 15 5e-05 0.011 18.5 1.0 1 23 389 412 389 412 0.97 11 15 1.7e-06 0.00039 23.1 2.6 2 23 424 445 423 445 0.98 12 15 1.7e-05 0.0039 20.0 0.8 3 23 460 480 458 480 0.96 13 15 8.8e-06 0.002 20.9 1.4 1 23 486 508 486 508 0.98 14 15 2.2e-05 0.005 19.6 1.1 1 23 514 536 514 536 0.98 15 15 0.008 1.8 11.6 0.7 1 21 542 562 542 563 0.95
Sequence Information
- Coding Sequence
- ATGTATTTTTTCAGGACGTTTGCGATTTTTGGACAATTGGCAATATATGGAGTTAAAAGACAAGAAAAATCTAACGAAATTCAGTCTTATATAGTAGAGCAAACATATGAAGTATTGGAAGATATTGACGATTCGTCAGAAGTTAATTTACCGATTGAAATTGAACGTTCACCGTCTCCAGATGATACGAACCTAGAAAAAGATTCACCACCGTTAGAAGACATAGAAGTGATTTTTACCGATGAAGTTGTTACCGAAACAGTTAATCAACCAGCTGCTAAAAAACCAGCAATGTGCCACTTGTGCGGAAAGAACACTACAAGTCTTAGTGTACATTTACGACGTTGTCATGGTACCTTTAAATGTAAAGTATGTTACCATTCCTTTAAATCCCAAAATGATCTCGATACACACCAGGAGTTACACAGAGATAATAAGTTTCCGTGTGAAACTTGTAAGTTGAGTTTTAAAACCGCTTTCGAATACGCTGTGCATTCAAGAGAACATTCTGGATTGAAATCGTATAAATGTCCACTTTGCGATTTTGGTACCCCATCAAGGGCTTCTGTAAAGATTCATATAAAGCGGCACGAACAGGATTTTAAgttaataaaatcaaaagtaaaactAGAAGAGTTAATCAATTACGAGGAACTGGTTAATACTCTCACGTCATCGCCCAAGAAAAGAAGACAGAAACGACTATGGACTTGTAGAAAATGTAGTGAGGAGTTTAATACATCCAGAAAATTACGTGAACATAGAAAAGTGCATCGTAAGCAAGATGATGATGTGCAGTACAATTATAAATATGATCAAATTCGTGAACTTTTCATTTGCTATACTTGTGATTTAGAAACAACCAGTAAGGAGGAAATCGAACAGCATGTCCTCATACATGAAGAAAAATTCGCTTGTGAGACTTGTAGCAAAACTTTCGTTAAACCCTACGAGTATTCGTGTCATTTATTTAATCATGACAAATCAAAAGGATTCCGATGTCCGTTTTGTAAATATACAACAAGTAGACGTACTGCGATCATGATACATATTAATACGTATCATTTACGTAAATTTATATATACCTGCTCGCAGTGCGGCAAAGGTTTTAACGACTGTGTGTTATACAAGGAGCATGGCAATGTTCACAAAGGTATCAAACCATTCCAATGTGTGGTATGTAACAAAGACTTTGCCTTTTCAAGTTATTTAACGACACATCAAATTCGTAATCATAGAGTTGTTATAGATGGTATGATCGGTAGTAATCAATGCCCTGTCTGTTCGAAAAGTTTCACTAAAAAGAACACCCTTCAAAGCCATATGAAACGACACGAAAATACGAACGAGAAAAAAATACACGAAAAAAAGCACTTATGTGATATTTGCGGGAAAGGTTTTGCACGCACCGAAAAATTAAGGATACATTACAGGGTTCATACCGGGGTCAAACCGTATACTTGTTCCTATTGTGCCAAAAGTTTTACAAAGAAGGATTATTTAATTATGCACGAACGGGTACACAGCGGTGAAAAACCGTATTCTTGTGACTATTGCGGAAAGTGCTTTAATCAAGGGGCACCTTTAAGATTACATGTACGAAGTCATACAGGTGAAAGGCCTTATAGATGTCATCTTTGTAATACCGGTTTTATTTCACGGGGTGTTCTTAATTTACACTTTAGAAGTTGTCCGGGTAGTTCTGCTTAg
- Protein Sequence
- MYFFRTFAIFGQLAIYGVKRQEKSNEIQSYIVEQTYEVLEDIDDSSEVNLPIEIERSPSPDDTNLEKDSPPLEDIEVIFTDEVVTETVNQPAAKKPAMCHLCGKNTTSLSVHLRRCHGTFKCKVCYHSFKSQNDLDTHQELHRDNKFPCETCKLSFKTAFEYAVHSREHSGLKSYKCPLCDFGTPSRASVKIHIKRHEQDFKLIKSKVKLEELINYEELVNTLTSSPKKRRQKRLWTCRKCSEEFNTSRKLREHRKVHRKQDDDVQYNYKYDQIRELFICYTCDLETTSKEEIEQHVLIHEEKFACETCSKTFVKPYEYSCHLFNHDKSKGFRCPFCKYTTSRRTAIMIHINTYHLRKFIYTCSQCGKGFNDCVLYKEHGNVHKGIKPFQCVVCNKDFAFSSYLTTHQIRNHRVVIDGMIGSNQCPVCSKSFTKKNTLQSHMKRHENTNEKKIHEKKHLCDICGKGFARTEKLRIHYRVHTGVKPYTCSYCAKSFTKKDYLIMHERVHSGEKPYSCDYCGKCFNQGAPLRLHVRSHTGERPYRCHLCNTGFISRGVLNLHFRSCPGSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -