Mvil053723.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melanotus villosus
Gene Symbol
-
Assembly
GCA_963082815.1
Location
OY720422.1:38114915-38121972[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0026 0.59 13.1 3.4 1 22 206 227 206 230 0.91
2 22 9.8e-06 0.0022 20.8 3.5 1 23 236 257 236 257 0.98
3 22 6.9e-05 0.016 18.1 6.9 1 23 263 285 263 285 0.99
4 22 1.1e-05 0.0026 20.5 0.7 1 23 291 313 291 313 0.98
5 22 0.028 6.4 9.9 4.6 1 23 319 341 319 341 0.97
6 22 0.0014 0.32 14.0 2.7 2 23 356 377 356 377 0.97
7 22 1.1e-05 0.0025 20.6 0.1 1 23 382 404 382 404 0.95
8 22 4.5e-06 0.001 21.8 1.6 1 23 410 432 410 432 0.98
9 22 2.9e-06 0.00065 22.4 4.5 1 23 438 460 438 460 0.98
10 22 3.4e-07 7.6e-05 25.3 0.3 1 23 466 488 466 488 0.99
11 22 7.8e-06 0.0018 21.1 0.7 1 23 494 516 494 516 0.97
12 22 0.0015 0.34 13.9 1.6 1 22 715 736 715 739 0.91
13 22 0.00017 0.038 16.9 2.5 1 23 745 766 745 766 0.96
14 22 1.3e-06 0.00029 23.5 1.4 1 23 772 794 772 794 0.99
15 22 2.9e-06 0.00066 22.4 0.9 1 23 800 822 800 822 0.98
16 22 3.3e-05 0.0075 19.1 1.1 1 23 837 859 837 859 0.98
17 22 0.00024 0.054 16.4 4.1 1 23 878 900 878 900 0.97
18 22 3.9e-06 0.00087 22.0 0.2 1 23 905 927 905 927 0.95
19 22 0.00013 0.03 17.2 1.5 1 23 933 955 933 955 0.97
20 22 3.7e-06 0.00084 22.1 2.8 1 23 961 983 961 983 0.98
21 22 2e-06 0.00045 22.9 0.2 1 23 989 1011 989 1011 0.99
22 22 1.8e-06 0.00041 23.1 0.5 1 23 1017 1039 1017 1039 0.97

Sequence Information

Coding Sequence
ATGGATTCGGTTATAACATCATCCGTAGCTAAAGTACCTAAAGCACCAGTGGAACCATTGTCACCGACACTCTTTGATAATATTTGTAGAGGATGTTTATGTTCCCAAGAATTGGTGCATCTGTTTGAAGTAACTTACGAAGACACTAATTTATGTGATATGTTTAAAAACTGTGTTACTCTTCAAGTAGAACGCAATGATAATTTACCACAGAATATCTGCAAAACTTGTGTAACAGGCCTTATTCAAATATATACATTTAAACAACAATGCCAACACTCTGAGACCCTTTTACGTACAgtattaactgaagaaaaacATAACGCAGATAATCAAAGTGGACTAAAAGTTGACCTCTCTGCTGAATGTCAGAAATTACCTAAGGAAAACGACTGTGAAAAAAGTGGCGATCTTGATACTGGCAATAACCCTACACCGAATTTAAGACCACGTCGAACTTCAAATGGTAAAACATACACGTGTAAAGGTAAAGTTAAAGAAGAATCAGATTCGGAATGCGACTTAAAACAAGAAGATATACAAAGTGATGACAGCATAGCAGAAGAAAATTCATTACCATTAAAACCATTAAGACAGTCTATAAAATCCGATAAATATACATGTAAGCACTGTAACGAGTCTTTCGATTCGTATAATAAATTAAGTGCCCATCGGAAACAAGTAAAACATCCTCGACCACGTAATTATATTTGTCCAGAGTGTTACAAAACTTTTTCTTATAGTCATTTACAACAACATATGAGGACTCATACGAAAGAAAAACCATTTCGTTGTCACATATGCCAAATGCGATTCAGTTTAAACTGTAATTTGCGGAGACATATGATGACCCACACTGGTGAGCGGCCACATACCTGTGAAATCTGCGGAAAAGGATTTATTCAAGCAACTACATTAGTAGAACATAAAAGAACACATACAGGTGAAACACCCTTTGTGTGTAGTTACTGTGGTATGTGTTTCGGAAGATCAGGAAGACATAAAGCACatttaagaaaacatttaattgaTAATGGagaatttgataaattaatgGGCGACAATGAGTGTCATGTATGCCACCGTTTTTTTGCAACAAAAGGTGTTTTAAAAACGCACCTGTTAATTCACGGAGAAAAGACTTTTTTGTGTAGTGATTGCGGTAAAGGTTTTGTAAGTAATGCGGGCTTACTATCCCATATGAAAGTACACACAGGTATAAGACCGTATTGTTGTACGGTGTGTAATAAAGCTTTTTCTCAATTGGGAAGTTTAAAATCTCACATGCTTATACATACAGGTCAAAAAccatttatttgcaaagtatgttCGAAAGCGTTTACACAACGTAACCATCTAAAATATCATATGAGAACACATAGTGGAGAAAGACCGTATGTTTGTTCATACTGTGGTAAATCGTTCGCATTAAATGGAACACTCACTATTCATATTCGAACGCATACTGGTGAAACACCATTCATTTGTGAAATTTGTGGGAAAGGATTTTATGATTCCAGCAGTATGAAAAAACACAGAAAAGGCCATGCacagttaaatataaaagatgAAGgAGAATGTGATAATGGAACTGATCCTATGTGTTCTGTAAATGGTATTAATTGCATTACAACTCGTCAGTTTCATAAAATATGTAGAACTTGCCTATCAGAAGGTGAtaataaaccaatttttgaaGTGACTTATGAACACAAAACAATATcagaaattctaaaattgcACGCAGCTATTCAGATATGCCAAGAAGATAGATTACCCAAAAACATGTGTACAACTTGTTTAACAGATCTGTTTCAAATGTAtacatttattcaaaaatgcCAGCGTTCGGATACGATGCTTCGCTATATAGTAGAACTCGATTCTAAGAATGAAATAAAAGCAGATGAAACTAATacaaaaacagaagaagaaaattatgaaCAGGAACAGGATTTGAAATCAGAGGAATATAACCAACTCTTGGATGATCCtgatttaaattcaaacgatAGTTTAGACGAAGATGATGGTGATTACTCGGTAAAATCAAAATCGAAACGGAAAGTGCCATCGAAAAGTAATCGTAAACGTAGAAAACATATGCAGACAAGACTTGTATCTAAAATACAAGGTCCACCCTTTAAATGTAGAGACTGTAATGAAAGTTTTGACAAGTATGAATTATTAAGAACGCATCGTAAAGAAGCAAAACATCCAGAAGCACGTAATCATGCCTGTTCGGTGTGTTCGAAAACATTTACCAGTAGTAAACTTCGTCAGCATATGCGAGCTCATACAAAAGAAAAACCGTATCAAtgcaaaatttgttttcaaggaTTTAGTATGTCAGGAAACTTAAAAAGGCACATGATGACTCACACTGGAGAACGTCCTCATGTATGTGAAATTTgtggtaaagGTTTCATTCAAGCAACAACTCTACAGAATCATAGGAAAACCCATgctaaatatgaaaaaataggAGGGGATGCTAATAGTCCACactttgtttgtaattattgtgGTAGGGGATTTAAAAGACTCGCTCGTTATAATGCacatttaaagaaacatttttcgGAGAGTAACGATGTTAAAAAACCCATTCAAGATGATGAACCTCGAGAGCATGTGTGCATGATATGCAAACGAGCCTACAAAACCAAACATCTTCTTAAGGCCCATCAACTTACCCACGgggaaaaaacatttttgtgtaGTGACTGTGGTAAAGGTTTCGTAACTAAGGCCGCTTTACAATCGCACCTTAAAGTACACACCGGAGAAAAACCCCATACTTGTAATGTTTGCAAGAAATCGTTCGCACATGTAGGTAGTTTTGAGGCACATATACTTATTCACACCGGACAAAAACCTTATAATTGCAACATCTGTGCGAAAGCATTTACTCAGCTATCCCATCTGAAATATCATTTGCGCACTCATAGCGGAGAAAGGCCCTATGTTTGTGCGTTTTGTGGAAAAAGTTTTGCGTTAAAAGGTAATTTAACTGTTCACGTGCGCACTCATACCGGTGAAACGCCATATATATGTCCCATTTGCGGAAAAGGTTTTTACGATTCGAGCAGTATGAAAAAACACAAAAGAGGACACGGAGATTCTAACATATCACCACCTCTACAACCGGTGGGATTGAACGTTGTTAATGTAGAAGTTATTGACAGCATTAATTGTGTAAATGTAAATCCATTAATAGCCTAA
Protein Sequence
MDSVITSSVAKVPKAPVEPLSPTLFDNICRGCLCSQELVHLFEVTYEDTNLCDMFKNCVTLQVERNDNLPQNICKTCVTGLIQIYTFKQQCQHSETLLRTVLTEEKHNADNQSGLKVDLSAECQKLPKENDCEKSGDLDTGNNPTPNLRPRRTSNGKTYTCKGKVKEESDSECDLKQEDIQSDDSIAEENSLPLKPLRQSIKSDKYTCKHCNESFDSYNKLSAHRKQVKHPRPRNYICPECYKTFSYSHLQQHMRTHTKEKPFRCHICQMRFSLNCNLRRHMMTHTGERPHTCEICGKGFIQATTLVEHKRTHTGETPFVCSYCGMCFGRSGRHKAHLRKHLIDNGEFDKLMGDNECHVCHRFFATKGVLKTHLLIHGEKTFLCSDCGKGFVSNAGLLSHMKVHTGIRPYCCTVCNKAFSQLGSLKSHMLIHTGQKPFICKVCSKAFTQRNHLKYHMRTHSGERPYVCSYCGKSFALNGTLTIHIRTHTGETPFICEICGKGFYDSSSMKKHRKGHAQLNIKDEGECDNGTDPMCSVNGINCITTRQFHKICRTCLSEGDNKPIFEVTYEHKTISEILKLHAAIQICQEDRLPKNMCTTCLTDLFQMYTFIQKCQRSDTMLRYIVELDSKNEIKADETNTKTEEENYEQEQDLKSEEYNQLLDDPDLNSNDSLDEDDGDYSVKSKSKRKVPSKSNRKRRKHMQTRLVSKIQGPPFKCRDCNESFDKYELLRTHRKEAKHPEARNHACSVCSKTFTSSKLRQHMRAHTKEKPYQCKICFQGFSMSGNLKRHMMTHTGERPHVCEICGKGFIQATTLQNHRKTHAKYEKIGGDANSPHFVCNYCGRGFKRLARYNAHLKKHFSESNDVKKPIQDDEPREHVCMICKRAYKTKHLLKAHQLTHGEKTFLCSDCGKGFVTKAALQSHLKVHTGEKPHTCNVCKKSFAHVGSFEAHILIHTGQKPYNCNICAKAFTQLSHLKYHLRTHSGERPYVCAFCGKSFALKGNLTVHVRTHTGETPYICPICGKGFYDSSSMKKHKRGHGDSNISPPLQPVGLNVVNVEVIDSINCVNVNPLIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-