Mvil087783.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melanotus villosus
Gene Symbol
SDR-1
Assembly
GCA_963082815.1
Location
OY720426.1:49282108-49288818[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.8e-07 3.8e-05 25.7 0.0 5 35 271 302 267 309 0.88

Sequence Information

Coding Sequence
ATGGTGGTTTCTATGGACCGATGGAAAGGAAAAGTTGCAGTTGTGACTGGTGCGAGTGGAGGAATCGGTGCTGCAATTGTCAAGAAACTTGTCGAAGAAGGCTTGAAGGTTGTAGGAATAGCTCGCCGTAAAGAAAAAATCGAAGAGTTAGGAAAAAGCCTGCAAGGAAAAAGTGGCAAGCTTTACGCACTCAAGGGCGATGTCAgcaaagaagaagatattgtCCAAGCATTccaatggattgaaaataacGTGGGTCCAATCCATATCCTTATCAATAACGCTGGTATTATAAGGGGCAAAGGCCTACTAGATGGTGAGACGAAATCGTGGAGGGAAACTTTCGACATCAACGTGCTTGGTTTGTGCGTTGCCACCCGGGAAGTTGTTAAAACCATGAAAGCCAACAACATAAACGGACATATAATCCACATAAACAGCATTTCAGGGCACGAAGTCCCCaactttccaaatttaaatgtttatccCGCATCTAAGCACGCTGTGACAGCCTTGACCGAAACTTTAAGGCAGGAATTGAACTCAATCGGGAGTAAAATCAGGATTACGaGCATCAGTCCAGGAACTGTAAACACAGAAATTTCAGAAGGTGGTGGAACTGACGTGTCTCCTGATTTACAGAAACATCTCGCAATTGCTCCTGTTTTACAGTCTGAAGATATTGCCGATGCTGTTGTTTATGTTCTGGCAACACCAGCGCATGTTCAGatgagTGAACAGAAACTTGCCCGAAAATCAGCTCAAACACCAATCCGAAAATACTGTCGATTTCGGTACGAAGAAGCAGTACTTGCTAAAGCCCTCCAAGACATACAAGACGGCACTGAAACTTTGAATTCGGCTTCAAAAAAATATGACATTCCCAAGTCAACTCTTCACAATAAACTGACTAACAAGACACCTAACATTAGAAAAATGGGCCCTCAGCCAGTGTTAAACGAGCTTGAGGAACATCGATTGGAACACTGGATTCTGGCTAAAGCAAAATTGGGATTTCCGATGCATCCGTCGGAACTTAAAAATGCTGTACAGAAGATTTTGACGGAAACTAGTCGGCCAAATCCATTTAACAATAATAGGCCTGGAGAAAAGTGGCTCAAACTATTTTTGCAAAGGCATCCAATCATTGGCAAACGTAACACTGAAATAATTTCCAAGTCGCGTGCTGCCGTAACTGAAACTGCTATTAGAGAATGGTTTCATGACTTGAAAGAGTATTTAATAGAACATGACCTTTTGGACATGATGGAAAATCCATCGCGAATGTATAATGCGGACGAAACTGGAGTGAGGACGTGTGTAAAATCAGGACTGGTGTTGGGACCTGtctcaaaaaatttcaaaaacttgtaTGAGATCTCATCTGGTAATGAAAAGGAATCCATTACTGTCTTATGTACCTACAGCGCATCTGGTATTGCAGCCCCGCCGATGGTAATTTTTCCTTATAAAAGGATTCCCAAGGAGTTGGCTATGTCAGTTCCAGGAAGTTGGGGAACTGGACGGTCGGACTCTGGCTGGATGACCGGAGCAACGTTTTTTGAATATGTTGCCAATGTGTTTTACAATTGGCTTGTCGCAAATCAAATCACATTTCCGGTCATATTATTCATTGACGGGCACAAGAGCCACTACAGCATCGAATTATACGAATTTTGTAttgacaaaaatattattttatattgtctTTATCCGAATTCTACGCATATTCTGCAACCGTGCGATGTTACGATTTTTAAGCCTTTGAAAAGTGAATGGAAAAAAGCTTGCCAAGCCCATAAACAAAGAACTAGTACATCTATAACTAGATACAACTTCTGCCCTCTGTTTGCAGAAGCTTTTGAAAAGGCAGGGCAGCCCAGTACTATAATACATGGCTTTGAAAGGTGCGGTCTTTATCCATTAAATCCAGATAAAGTAGATTATTCGAAATGCATATCGACCAGACGGGATGAGTTATTTCCAAAATCCAAACTAGTAGACAATGAGTTGACTTCTCAAGACTACGAGTCGTGTTTAAAAGTAATGAATCACTTTTTTGGTTCAGCAAAACTTGCTGGATACGAGAAAGTAGAAGAACAATCTACAAGTGAAGATAGTACTTATGCACTATGGAAGTTTTGTACAGAGTTTAAAAATACAACTGAAATATTGCCTTCTACAGAAACTGAACCGAAACCTATTTTTGACAATACTTTGATTGCTGAGCAAAAACTCACTGAAACATTCTTAAATGATTTGCCGTTTGAAATCGATGGAGTTATATATGGAGCACTGGACAACAATGACAATTTCAATATTGAGAACGAGAGGTTGGATGACCTAGATCCTCAGCTAGATGTAAACCAAATCATCTTTCCTGACTGTGATATGaacaaaaatattgaagatCTAGTCGAACCTGCCGACAGTGTCAACGAAACTATCGAATCAACCTCGAAATTAACAGAATTTGTTGATGCTTTAAGTGAAATCCCTACAACCACAGAGTTGGCGGATTTACAGTATTCAGAAGAGTATGTATCAATGTATGAAGTTATCATTGACTCTATTCTAGACAGAGTATTTGACACTTTTGACAAGAAGCAAATATCCCACCCATCTGTAATTTATACGGAAAATTCCCCACAGGGAGTAATCGAAAATATTAAACGTGATAAGACtgataagaaaatacaaattcttTCAAACGTTGTTATAAAAGAAAAGACTGATGACAGTGGAATCTGGACAAAACATTTACATTGGCCACATCAAGATGAAAAAGTCCGTAAAGGCAAGACTGCTACAAAAATGCCTTTTGCAATTACATCGTTAAAATGGTTAGAATATTATGAACAACAAGACAAGgtgaaaaaagaaaaggaagaagcaaTAAGGatcagaaaactaaaaaaagaacagAAAGCGAGTACTTCTCAAGCTGAGAAAAAAAAGATACTCAAAAGAAAGCGAGAGAAAAAAGATGAAGATGAAAGAGTAAGAGCCAAACGAGATAGAGAAGAAGACGCGGATAGCTGTAAAAGTTCCAAAATTGATCAGACAGAAGTAGAAGTGATACAAAGAAACAGTGCTAACAACAAATCCAAGAAATTGACTAAAAAGATGATAGAGATGAAAGAAGAAGATAGCTTAAGTAGTTCTGAATATTATATAACAGCAGTAGAAGAGAAAATGGAAAAGAGTACTAGGAGCAAGTGTACAAAAGAAACTCCTATTAAGAATACAGCAAAAACTCCAAACCATATTTTGGGAGTAGGAGACTACGTGATTGTAAATTATGATGATAAGCTTTATCCaggattaattaaaacagttgaGCGAGGGCAATATGAAGTAAGTGTTATGGAAAAAAGCTCCAATGGAAAATGGAAGTGGCCAAAAATTACCGACCAAATCTAG
Protein Sequence
MVVSMDRWKGKVAVVTGASGGIGAAIVKKLVEEGLKVVGIARRKEKIEELGKSLQGKSGKLYALKGDVSKEEDIVQAFQWIENNVGPIHILINNAGIIRGKGLLDGETKSWRETFDINVLGLCVATREVVKTMKANNINGHIIHINSISGHEVPNFPNLNVYPASKHAVTALTETLRQELNSIGSKIRITSISPGTVNTEISEGGGTDVSPDLQKHLAIAPVLQSEDIADAVVYVLATPAHVQMSEQKLARKSAQTPIRKYCRFRYEEAVLAKALQDIQDGTETLNSASKKYDIPKSTLHNKLTNKTPNIRKMGPQPVLNELEEHRLEHWILAKAKLGFPMHPSELKNAVQKILTETSRPNPFNNNRPGEKWLKLFLQRHPIIGKRNTEIISKSRAAVTETAIREWFHDLKEYLIEHDLLDMMENPSRMYNADETGVRTCVKSGLVLGPVSKNFKNLYEISSGNEKESITVLCTYSASGIAAPPMVIFPYKRIPKELAMSVPGSWGTGRSDSGWMTGATFFEYVANVFYNWLVANQITFPVILFIDGHKSHYSIELYEFCIDKNIILYCLYPNSTHILQPCDVTIFKPLKSEWKKACQAHKQRTSTSITRYNFCPLFAEAFEKAGQPSTIIHGFERCGLYPLNPDKVDYSKCISTRRDELFPKSKLVDNELTSQDYESCLKVMNHFFGSAKLAGYEKVEEQSTSEDSTYALWKFCTEFKNTTEILPSTETEPKPIFDNTLIAEQKLTETFLNDLPFEIDGVIYGALDNNDNFNIENERLDDLDPQLDVNQIIFPDCDMNKNIEDLVEPADSVNETIESTSKLTEFVDALSEIPTTTELADLQYSEEYVSMYEVIIDSILDRVFDTFDKKQISHPSVIYTENSPQGVIENIKRDKTDKKIQILSNVVIKEKTDDSGIWTKHLHWPHQDEKVRKGKTATKMPFAITSLKWLEYYEQQDKVKKEKEEAIRIRKLKKEQKASTSQAEKKKILKRKREKKDEDERVRAKRDREEDADSCKSSKIDQTEVEVIQRNSANNKSKKLTKKMIEMKEEDSLSSSEYYITAVEEKMEKSTRSKCTKETPIKNTAKTPNHILGVGDYVIVNYDDKLYPGLIKTVERGQYEVSVMEKSSNGKWKWPKITDQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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