Basic Information

Insect: Melanotus villosus
Gene Symbol: bab2_1
Assembly: GCA_963082815.1
Location: OY720423.1:11795593-11803666[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.7e-10 2.3e-08 36.1 0.0 1 39 372 411 372 415 0.90

2 4 1.5e-11 2e-09 39.4 0.1 1 39 426 464 426 468 0.95

3 4 8.1e-16 1.1e-13 53.1 0.0 1 45 481 526 481 526 0.97

4 4 5.7e-15 7.8e-13 50.4 0.0 1 39 533 572 533 576 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.7e-10	2.3e-08	36.1	0.0	1	39	372	411	372	415	0.90
2	4	1.5e-11	2e-09	39.4	0.1	1	39	426	464	426	468	0.95
3	4	8.1e-16	1.1e-13	53.1	0.0	1	45	481	526	481	526	0.97
4	4	5.7e-15	7.8e-13	50.4	0.0	1	39	533	572	533	576	0.94

Sequence Information

Coding Sequence: atGTCGGGGCAACATTACTGTTTAAGGTGGAACAATTACCAAAGCAATATGACCTCCGTCTTCCACCAGCTTCTTCAGAATGAAGCTTTCGTGGATGTCACATTAGCTTGTAAGGATTTATCGCTAAAAGCACACAAAGTGGTGTTGTCTGCGTGCTCCTCTTACTTCCAAAAATTGCTGCTGGAGAATCCCTGCAAGCATCCCACGATAATTATGCCGCAAGACGTGTGTTACGCTGATCTCAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCCCAAGCAGAGCTGCAGtCACTATTGAAAACAGCAGATCAGTTAAAAATAAAGGGCCTCTGTGaatcagaagaaaaagaaaattcagcttcttcttcaatttttgtacCTAAAGGTCATCCAAAGATCTGTAAGGTATCCTCACCTATACACTACAGAAAATTAGATAGTAACAAGAGGCATAAATTCAGAGAATTTGACCAAGACATTTTCTCAGATGGAGAAGAAGatgttaaagaaaatataatacaaGGAAACACTTCAGAGGAAGATAGTGATGTACCATTAGTTGTTGATGAGGgaccaaaaagaaaaaaactgacACAAGCTCAATCTAAACCGATTAACATGAGCAGTCATGGCCTTTTGGCTGGACAGGCTCTATTCTCTCAGCTGTGTGATAACGATGATTTCCCACCGGAACCACCAGCTCCAACAGCTACACCGGTAGGGCATGTCGACCTGCAAGATCATTCTCCGACCCGTAACTTATTCCAGTCATCCCACAGAACAGACTTATCAGACGTTCACATAAAATATGAAGATATCAAAAAAGAAACTAATATTAAGTTTGAAACGTTGCGATCGTATGACCATGACTCCATGATGGATATGGATGCCTCTCACATGTCTGGAGCAGATCATTCAATGGAAAGCCATGAAGACGCAGAGAGAGCCATGCATTCCATGATGGTAACCCCAGAATTAATGGGAATGATGCCTGGAGCTTCAGGGAGACTAGATCCATTAAATGGAGACGGTCAGAAAAGTAACGGTCATTCAGACCATTTGACCCCTAGGGGACATGGTGGGGGACCTAAAACGTGGACTCAGGAAGATATGGAATTAGCTTTAGATGCCTTAAGAAATCATAATATGAGCCTCACAAAGGCTTCTGCAACGTATGGTATTCCATCCACCACATTATGGCAAAGAGCGCATAGATTAGGTATAGACACTCCTAAAAAAGAAGGGCCTACTAAATCATGGACTGAGGAGAATTTAAATTCGGCTTTAGAAGCATTAAGAACGGGTACTATTTCTGCAAACAAAGCCAGTAAAGCGTATGGTATACCTAGTAGTACATTATACAAAATAGCTAGGAGGGAAGGTATAAAATTAGCAGCACCATTTAATGCGGCACCCACTACGTGGTCACCTGAAGACTTAGAAAAAGCATTAGAATCTATTCGATCCGGCCAATCATCAGTTCAAAAAGCTTCGACAGAATTCGGTATTCCTACAGGAACATTATATGGGAGGTGTAAAAGAGAAGGAATTGAATTATCACGTTCGAATCCTACACCATGGTCGGAAGATGCAATGGGCGAAGCTTTGGAAGCTGTGAGATTAGGTCACATGTCAATAAATCAAGCAGCGATTCATTACAACCTTCCGTATTCGTCGCTATATGGAAGATTTAAAAGAGGCATTAAATATGACGCAGAAACCATCGATTCTAACAATTCGGATAGCCAATCGCAACCGGATTCTCAAGTGCTTGTTATGGATTATCCCAATAATCATCAACAGATTCAGTATCAACATCATACGAATAGCTGA
Protein Sequence: MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESEEKENSASSSIFVPKGHPKICKVSSPIHYRKLDSNKRHKFREFDQDIFSDGEEDVKENIIQGNTSEEDSDVPLVVDEGPKRKKLTQAQSKPINMSSHGLLAGQALFSQLCDNDDFPPEPPAPTATPVGHVDLQDHSPTRNLFQSSHRTDLSDVHIKYEDIKKETNIKFETLRSYDHDSMMDMDASHMSGADHSMESHEDAERAMHSMMVTPELMGMMPGASGRLDPLNGDGQKSNGHSDHLTPRGHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDAETIDSNNSDSQSQPDSQVLVMDYPNNHQQIQYQHHTNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00003877;
90% Identity: iTF_01284853;
80% Identity: iTF_00978509;