Msca003729.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- Zbtb41_1
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:56531357-56534596[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.7 1.2e+03 2.1 1.9 3 21 597 615 596 619 0.92 2 11 0.0024 0.61 12.5 1.0 2 19 641 658 640 661 0.93 3 11 2 5.2e+02 3.3 0.4 1 23 681 705 681 705 0.91 4 11 0.28 71 6.0 0.2 1 22 710 731 710 734 0.81 5 11 0.041 11 8.6 1.0 2 23 762 783 761 783 0.97 6 11 0.00069 0.18 14.2 0.9 3 23 807 828 806 828 0.90 7 11 0.00074 0.19 14.1 0.2 1 21 833 853 833 854 0.95 8 11 0.78 2e+02 4.6 0.2 2 23 881 902 880 902 0.92 9 11 0.00053 0.14 14.6 5.8 2 23 916 936 915 936 0.97 10 11 3.7e-06 0.00095 21.4 1.1 1 23 942 965 942 965 0.93 11 11 1.3 3.2e+02 3.9 0.2 2 12 984 994 983 995 0.85
Sequence Information
- Coding Sequence
- ATGCTCGAAGAGGACCTCGATGATACACACTTGTGCATCAAGTGTAGTGCCACAATTGTCGGCCTCGATAATTACGTACAGCATCGCAAAACGAATTGTGTCTGTGGGAAAACGGCAAGAGCTACCATCGTTTCTGGGTATGAAGGCTTTGAAGAGTATACAGGACCGTCTGGCTATGTTAAAACTGAGGTGGGTAATGCCGGTGGTAAGGCGTCTAAGACTTTAAGTGATCCTTATGACTTGCCCTATGAGTTGGGAGCAGATGTTTTCTTCTCTTCGCTCCAACTGCAAAGTGTTCAGGCAAGTGGCGGCGGCAGCGGCGGCGTCGGCACTGGCACCAGAAAAACCACATCCATTCAGCAGATTTCGAATAGAAAAGCCAATAGTTCTGGAAGGGAAGAGGCAGATAATGATTGGCAACAGGAAACACAAAACAATACAGACAACCTGATGAAGGTCGTGCGGGATATTGGAGAAACAAAGAAGTTCGAACCGATATTTCAACCGATTTCTTTTGCACATGGTTCTCCAGAGCCTGAGCAgagtgacgatgatgatgacgatgacgatgatttTGATGACGACGATGATATTGACTATGTGCCAACGCCGTATTGTGGAGGCAAATGGAAACCCGGCAGTCAGCCATCATCTTCGAGATGTGGGGGCAGCAAATGGAAAGATAAAGGAAATTTGGCGCCATCAACGACAGGTGGAAAATGGCATAGAAAAGAAAGTAATAAGTGGAAATCATCGAGAAAGTTATTGGGATCGCCTTCTCCTACCGATCTCTCACCCCAAAACCGCTCCAAGACTCTTTCAAAAAAGGATGTTTTTTCTTCGGAGAAAATCACAGAAGCAACAAGTTCCGAAGTTCCTCAAGTGAGTAGTAAGCTACTCTCACACAAATTTTTAAAGCTCTCTAAGAGCACGGCATCTGAAAGAGAAACTGAAGATACCCAGTCAAGACGCAAATGGTATCCAAAGTTGATGAAATGCAAACCACCACTAACCGGTGGTAAATGGAAACCAGATGGCGATGAATCACCGAACATTTTAGACATGCCAACTGGAGGCAAATGGAAAGCTGAAGACTTGCCGTCGACCAGTGGTAAGTGGAAGCCAGGGAATCAACCTACATCCTCTGTTCAAAGTACGACAGCATGGAACGAACTGGAAGCTTGGGAAGAGGCGATCAATGCACATCCACCGGTTGACTATACTAAAGGCAAATGGGTTCCAGGCACTAAAGTAGACAAGCTAGAGTATAAAGAAGAGACCATTCCAGCAAACCAGGACTTTTGGTGCAACATTTGCTGCCGCAAGCTGAAAACCAAAACCATTTATGAAAAGCATTTAAAGTCAAGTGTGCATTTGAGAAAATCTGAAACCGAGGATCAGCTTGAACGGGCTGGTGTCAATCCACTCGAAGTCTCTTCACAAACCATCCAGCCTCCTCCGATAGTCATAAAACGGTCGATTTCTCCAGAGCCAAACactagcaaaagaaaaagaaggaaaaccTTCGTCAAATGCAACATTTGCAAACATCGTATGCAGCGTTACCTGATGGGCAAGCATTTGATTTCTCATTACCATTTTGTTCGACGGGCGATTGATCCGGCAAAGGCATATGGCATGGTTCTCGACAATATCCATCAGATTGTTTTACAATCACCCTTCCAGTGTAACCCGTGCCGGTTCTATGCAAACAACGAAGATAATTTTCTTGACCATTGGAACTCGGTTGAGCACCGTGATAGGACAGAAAGTCCTGGAAAATTCTGGTGCAGTTTTTGTCGCTTTGAGTGTGAAGACAACAATCAGATGAGACGCCATTTGCTTGGAACGGACCATCGTGAAGTTATATTGGCCATCAATAGATCGGTGCCGATAATTATCAGCAAGATGATTGCTATAAAGTGTCCGAAATGCCACCAGGAATTTCGCTACAACATGGAGTTGCGTCAACACTCGTCACGATGTGAAGGGTCTAAAGTAGAGCCAGTGGGAACCGCATCGGATGACTATCAGTCAAGGTTTCGATGTGTTCTGTGCCCGAATGAGGTGCTGAAATCGAAAATTGCTCTTCAGAGGCATGAGAAGTTCAAACACAATAAACAGCGGTTCTATTGTTCGATATGTGACGAGGAGTTCGGAAACGCTGACATAGCTGTCAAACATCGAAAGACCAAGGAGCATAGGCAAAAGTCGGCTGAGAAGCTAAGTCAATTGAAGAGGGACAAAAGTATCAAGACTGCCAAAGACATCAACGAGAATTTGAAGTGTGAAAAGTGTGATCATATGTCATCATCAAAAGTTGAAGCTATGCTGCATCAAATAACTCATCTAAAAAGCTGCAAGAAAACCGAAGACAATTCGCAAGAAATAGTCAAGGAGCATTCAGTTGTTCGTAGGTGTATCTACTGTAAACAGAACTTTTCAAACAAATCCGAACTAAAAAACCATCTGAATGCTGCTCATCCAGAGTCGAAGCATGTTTGTCCACTTTGTGGAGAAGCTTTCACTCTATCCCAAGAGCTCAGCTCCCATAGAAGATACAAAGTATGTGTAGCATCCACTTCAAAAAAACCCTCCTCCGATCTCCCATCTCATAAAAATGATACCAAAAAATCCTGGAAATGTACAGATTGCACATTTAGCTCTGCCTATGAATCGGAGCTGATATTCCATCGAATTATACACACCCTTGGTATGGGGGCGCTCCAGACCGGAGAAAAGCTCAAGTGTCCACTTTGCGAAAAGTCATTTAACAAACATTCACTTCGGCATCACTTGCGCCAACATACCAATGAAAAGACTTTTCTGTGTGAAATCTGTAAACGGTCATTTTCTCGGCGGAACAATTTGAAAGAGCACATGGAATATGTGCACTCGGTCGGGGGTGCAAAGAAACGCAAAACCGGACGTTCGGCGGATGAGAGTCTCATATGCGATACATGTGGCAAGATTTTTGGAACAAAGTGA
- Protein Sequence
- MLEEDLDDTHLCIKCSATIVGLDNYVQHRKTNCVCGKTARATIVSGYEGFEEYTGPSGYVKTEVGNAGGKASKTLSDPYDLPYELGADVFFSSLQLQSVQASGGGSGGVGTGTRKTTSIQQISNRKANSSGREEADNDWQQETQNNTDNLMKVVRDIGETKKFEPIFQPISFAHGSPEPEQSDDDDDDDDDFDDDDDIDYVPTPYCGGKWKPGSQPSSSRCGGSKWKDKGNLAPSTTGGKWHRKESNKWKSSRKLLGSPSPTDLSPQNRSKTLSKKDVFSSEKITEATSSEVPQVSSKLLSHKFLKLSKSTASERETEDTQSRRKWYPKLMKCKPPLTGGKWKPDGDESPNILDMPTGGKWKAEDLPSTSGKWKPGNQPTSSVQSTTAWNELEAWEEAINAHPPVDYTKGKWVPGTKVDKLEYKEETIPANQDFWCNICCRKLKTKTIYEKHLKSSVHLRKSETEDQLERAGVNPLEVSSQTIQPPPIVIKRSISPEPNTSKRKRRKTFVKCNICKHRMQRYLMGKHLISHYHFVRRAIDPAKAYGMVLDNIHQIVLQSPFQCNPCRFYANNEDNFLDHWNSVEHRDRTESPGKFWCSFCRFECEDNNQMRRHLLGTDHREVILAINRSVPIIISKMIAIKCPKCHQEFRYNMELRQHSSRCEGSKVEPVGTASDDYQSRFRCVLCPNEVLKSKIALQRHEKFKHNKQRFYCSICDEEFGNADIAVKHRKTKEHRQKSAEKLSQLKRDKSIKTAKDINENLKCEKCDHMSSSKVEAMLHQITHLKSCKKTEDNSQEIVKEHSVVRRCIYCKQNFSNKSELKNHLNAAHPESKHVCPLCGEAFTLSQELSSHRRYKVCVASTSKKPSSDLPSHKNDTKKSWKCTDCTFSSAYESELIFHRIIHTLGMGALQTGEKLKCPLCEKSFNKHSLRHHLRQHTNEKTFLCEICKRSFSRRNNLKEHMEYVHSVGGAKKRKTGRSADESLICDTCGKIFGTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -