Basic Information

Insect: Melanostoma scalare
Gene Symbol: wdn
Assembly: GCA_949752695.1
Location: OX456985.1:234173085-234176748[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9 2.3e+03 1.2 2.3 1 23 183 205 183 205 0.89

2 8 1.6e-06 0.00042 22.5 1.1 1 23 209 231 209 231 0.98

3 8 0.04 10 8.7 1.8 2 23 242 262 241 262 0.93

4 8 1.8e-05 0.0046 19.2 1.0 3 23 270 290 268 290 0.97

5 8 1.5e-05 0.0038 19.5 5.1 1 23 296 318 296 318 0.98

6 8 0.00014 0.037 16.4 3.0 1 23 324 346 324 346 0.97

7 8 8.4e-06 0.0022 20.2 1.1 1 23 352 374 352 374 0.96

8 8 0.00026 0.067 15.5 3.3 1 23 380 403 380 403 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9	2.3e+03	1.2	2.3	1	23	183	205	183	205	0.89
2	8	1.6e-06	0.00042	22.5	1.1	1	23	209	231	209	231	0.98
3	8	0.04	10	8.7	1.8	2	23	242	262	241	262	0.93
4	8	1.8e-05	0.0046	19.2	1.0	3	23	270	290	268	290	0.97
5	8	1.5e-05	0.0038	19.5	5.1	1	23	296	318	296	318	0.98
6	8	0.00014	0.037	16.4	3.0	1	23	324	346	324	346	0.97
7	8	8.4e-06	0.0022	20.2	1.1	1	23	352	374	352	374	0.96
8	8	0.00026	0.067	15.5	3.3	1	23	380	403	380	403	0.98

Sequence Information

Coding Sequence: ATGAGGGAAGAAGGTTTACTAAGCAAATCTAATTTTGGAAATAGCGATGAGATTTTTACATCGCTCCTCAAAATCAATAACTTTGATAATAGCATCAAGGATGAATCGCTAGATATAAATTTGTCGGCATGTGTGACCATATCCACAGATCCATCGAGCATCTGCAACAATAGTCTTTCATCGGATTTTTGGAAGGTCCTCGACGAAAATGCACAGGCCGATACAAGTAACAGCGCATTAACAAATCAACGATCAACAACGCTCGAGGATATCAATTTCATTAGTCCCCTTCCACCACCACCTGCaggacaacaaaaaataaacatttctgGGGACATAAGTCGTGTTTTGGGTCCAACATCACcgataaaaaagaaatgtcgCAATCGCAAACAGGTGaagcaacaaacaacaaaatcaaacgACAATAATGAAATGTCAGAAGCTGCGACAATTGCGGATGACGCTACTACGATCTCAAATAGTTTTAAGGGTAATTTTCCGAGTGCTGCTAGatcaaatgaatttttggaaGGCGGATTTAAGTTTAAATGCGAGCACTGCTGTGTTATATTGACCGGGTTGGAGGAATTCACGAAGCACGAAGCATCCCACAAGATTTTATTCAAATGCAACGAATGTGATCGCGAGTTTAGCAACGAAAATGGACTCAAGAAACACGTCAAAAGCCATCGGGATGAGTCTAGAAAGGACGGCTGGAAAAAGTGTCCCGACTGTGGAAAGTGTTTAAAACTGGGAAGCATGTGGATGCACAGGAAAATCCATAGTGATAATAAAAAGTACGGCTGTGATATATGTGgccaaaaatttgttcaaaaaattaatCTAACACATCATTCGAGGGTGCACACGGCCGAGAAGCCGTACGAGTGTTCGGAATGTCAAAAAagatTTCAAGAACGATCTCATTTGCAACGTCATCAGAAATACCATGCTCAAACACGTCCCTATCGTTGTGAAAAATGTGGCAAAATGTACAAAACCGAACGTTGTCTAAAAGTGCATAATCTGGTTCACTTGGAGCAGCGTCCTTTTGCATGTCAAGTTTGCAACAAAAGTTTTATAAGTAACTCGAAACTAAAGCAACACTCAAATATCCATACCGGTGAACGGCCATTCAAATGCAACTATTGCACACGAGATTTTACAAATTTTCCCAATTGGTTGAAACATACACGAAGACGCCACAAAGTTGACCATAAGACCGGTGAATTGTTGGAGAACATACCTTCTTATTGCACAAAGTCAGGCAAGAAATCTGCTGCTGCAACTGCGGAAGCTAATGTTGATGAAAAACCaacaagaaagaagaagaaaactgaAGCACTTCAAAAGAAGGAAACCCCAACGGCAACATCACAACCAGAGCTACAAATGCCAATGCCAAAGTCTGTTCCATTGCCAGCATCACCCACCGTCCAACTATTGAATGTAAAAATTAAAGATGAAATCAAAAAGGAACCTACTGACGTCAACACGAACGCAAGTTTCACAGATTTACACTGTCTCAGCATTACAAGTGCAGAGGAATTGATTATGGAACAAGCCCTTGAAATGGAAGAGTGTGGATTCTATGAGCAGCAATTTGCCAATGAAGCTTTGCAGTTTCATATAAAAAACGAGTTTGCAGTTAAGACGGAATTTGAAAACAAACCCTTATGCTCTGTGGACTCTTCCCCGTTCTCTTCGCCAGCCTCTACTGAGTTTCCTATTACGTACAATCTTCAGTCTCTTCCATCGAGCAACGTACCAACCGCAGCAACAATAACATCAACCCAGTCTGCAACCTCCAATCGAATGTTCACATCAGGTTTTAACAATCAAGTTCTTCCGTCCGTCGATACACTCTTAAATGCTTGCTATTTTAAGGCCGAGAATCAAAATATGtga
Protein Sequence: MREEGLLSKSNFGNSDEIFTSLLKINNFDNSIKDESLDINLSACVTISTDPSSICNNSLSSDFWKVLDENAQADTSNSALTNQRSTTLEDINFISPLPPPPAGQQKINISGDISRVLGPTSPIKKKCRNRKQVKQQTTKSNDNNEMSEAATIADDATTISNSFKGNFPSAARSNEFLEGGFKFKCEHCCVILTGLEEFTKHEASHKILFKCNECDREFSNENGLKKHVKSHRDESRKDGWKKCPDCGKCLKLGSMWMHRKIHSDNKKYGCDICGQKFVQKINLTHHSRVHTAEKPYECSECQKRFQERSHLQRHQKYHAQTRPYRCEKCGKMYKTERCLKVHNLVHLEQRPFACQVCNKSFISNSKLKQHSNIHTGERPFKCNYCTRDFTNFPNWLKHTRRRHKVDHKTGELLENIPSYCTKSGKKSAAATAEANVDEKPTRKKKKTEALQKKETPTATSQPELQMPMPKSVPLPASPTVQLLNVKIKDEIKKEPTDVNTNASFTDLHCLSITSAEELIMEQALEMEECGFYEQQFANEALQFHIKNEFAVKTEFENKPLCSVDSSPFSSPASTEFPITYNLQSLPSSNVPTAATITSTQSATSNRMFTSGFNNQVLPSVDTLLNACYFKAENQNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -