Msca039844.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456985.1:180871980-180882263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.13 35 7.0 3.2 1 23 1185 1208 1185 1208 0.97 2 12 0.00027 0.071 15.5 5.3 2 23 1370 1391 1370 1391 0.97 3 12 3.3e-05 0.0085 18.4 0.3 3 23 1399 1419 1397 1419 0.98 4 12 2.9e-07 7.5e-05 24.8 3.6 2 23 1426 1447 1425 1447 0.97 5 12 4.8 1.2e+03 2.1 0.1 5 23 1460 1478 1459 1478 0.96 6 12 0.0085 2.2 10.8 3.4 3 23 1485 1506 1483 1506 0.95 7 12 0.15 39 6.8 0.1 2 23 1517 1537 1516 1537 0.96 8 12 8e-05 0.021 17.1 0.8 1 19 1543 1561 1543 1562 0.96 9 12 0.00011 0.029 16.7 0.7 1 23 1573 1595 1573 1595 0.98 10 12 0.00024 0.061 15.7 9.0 1 23 1601 1623 1601 1624 0.96 11 12 0.0012 0.32 13.4 4.7 1 23 1629 1651 1629 1651 0.98 12 12 0.0015 0.4 13.1 6.0 1 23 1657 1679 1657 1680 0.96
Sequence Information
- Coding Sequence
- atggcTGGGAACGTACAATGTCCAGTATGTACATTATTCCTGCTCCCGGGTATGAATTTATCCGATCATTTGGAGACTCATCCAAAGGAGCAGGTCATAAAAGCCCTGGTACAGATGAGTCTTAAATCTGAGTCATCTGAACCGGCAACACCAGAAACACCCAAAAAAGCCAACAAAATTGCAGTTCCTGAAGACAATGACACCAATCAGGGTGAAGAAAATGAAAGGGACTCTCCGAATTCGGAAATGAGTGGCTGTATGAGTAGCAGCAGTGGTGCACCGATTCGTGAGGAAATAAATTCTAAACTAGATGATGGAAGAGATAACTGTGCACCGCATACACCGATGCCTCCGAATGTGATGTCAAATACACAAGTTGGGTATGTGTTTGAGAACAATagtaacagcagcagcagcagtagcaatACGTTCTTTGGACCACCGAGCACATAttatcatcaacaacaacaccaacaacaccaacaacacaatcatcatcatcatcatcatcaacaacaacagtcaCAATCACAGCAgcaacaaaatttacaaaactatCAATCGTATCCTCGTTTCCCGCAAGGTGGAAATAACAATCTAATGGGCTCTGGGCTAGCACAGCCTCCAATGCGACTGTTCTCCTATCAACAACCACCTAAACCATTGCAACCGCCACCTGCCTATGGCGCCGCCATAAGCCAACTTCGATCTCAAAATAGCCAAAATATGATGTCACACAACATCAATCGGCCACTTTATTCTCCAACAAACTACACAATTCCATCACCGACATCGTTATCAATGTCGTCAGCTTCTTCTACATCGACACCATCGCGCCTGCCACCACCATTACCTCCACCACCTCTTAACCAACGTTATCAGGCTAATTTTGAGCAAATTGAAACGAATTTTAACGAAAGTGGTGAAACGAACATGTCACCCAGGCGAAGATCAATGACACCCCCAATAAGACCTCCTCCCCAACTCTACCGTTCACCACAATCTTCATCAAATGCACAATACTCCAGACAGTCAAGCTCTCCCTACTCGGTCATGTCAGGTTCTCCGTCTGTGTTACGGTACGCAGAATCACCAGTGACTGCACACTATCTTGAACGAGAAAATGGTGATTTTATTGTACAAGAAACACCAAAACATGTTGTTGAGTGTGTTGAAAAGGACGACGGCGAGTTTTCAGTAATTGAAAGAGTCTATCATATGCCACCGAGTGTTGTTCAAATaaacgaagacgaagacgataATATGTCAGAACACGGGTCTAATAGTGAAGACATCAAGCTGATGGAAGATGACAGACAAAATGAATGGTCTAGCGAAGGCTCCTCAAACCAAGGACAGACAACCCAACTAAGAGAACAGCTGCATCAAAAGAAGTCTGCAATTACCGTACTCAGTGATGTACAATTAGATTTAAGTGAATATCTAGACTTAGTaggaaacatttttgcctccggAAAGGTTGCTAAAAATCGAACTGAATtaattaaagttgaaaaattcGAACCGGATGAAGTGAAAGAGGAAATGGGACAAACTATATGTCtggacgacgatgatgatgatgatttgattttaaatacAAATGAGCAGAAAGTCGAACATGTTGAAGATGAGAAGCAACCATTTGGTACTGAGCCAACGTTCAGTCCCCATTGTTTAGCAGAAGCTTTTTCCAAGACATTAATTGCAGATTcgttatcatcatcatcttcatcaacATCATTATCATCTGCACCAATAGTTACTCCTGTTACAACTAGTGTCATTCGATTAGCTGCTAATGTTACTTCAAAAAGTACTATAcacacaacagcaacaacaatgtTTAAGGAGTTCGTAGAAGATGCAACCTTTGATAAACCCACAATGACGAAAGTCGAAGAGTCAAGTGACACAGTAAAGTCTGACGAATCACAGGAACCGGTTGAGAGAATTGAACAAGGAATCAAAACACCAAGCAAGACACCATCCCAGGAGGATCTGGAGTTAAGTGGAACTAGTTCACTTATTAATAAGACTGaggaagaaaataaaacagCAAATTTAGAGAATTCGAGTCCACAAAATCAAGACGAAAACCTTACAACAACACCActgaaacaaattaaaaaggaaGTTAGTTCGCCAATCCCATCTTTCCAATCGGCAGTGAAGCGACCAATCAAGAAGCTTCCAAAAAAGCTGATCATCAAACCAAAAAGCAAGGAGACTACAACTCCGCGATCGGAAACAAGCCAACCGCAACAAGATCCAATAGCAGATCCAATTCCGCCAATTGCAATTCAAATTACAACCCCAACCCCAAGTTCAAGTCCATTACCGTCTACCTCGTCTGCAAGTAGCACTGTGGAATTACCAAAAGAAGTAtctaaagaagaagaagaagaaaaagatctGGAACCCCAAGatgaaataaatattattaagaCTGAAAGTTTATCGACCACAACATCAGATTCGGTTCTTATGACACCCTTATTCGCTGATGCGGACGAGATACTTCCACCTGATGATGATTCACCACAACCGTCAACATCGAGTTCGTCGATAGTGTTCCCCGAAGAGGAGAAGAAAGCATTAGAGTTGCTGACTTCTGATAAGAAAAAACCCACCGCTGATTTGACCGCATTCTTTGACGAGTGCCTGAAgaaagaagacgaagaagatcACCCAATGCATTCAATATTTGGAATGGATATCGGAAACACGGTGGAAACATTAAACGAACCATTGACACCACCACCGACGACCGAGTTCCCCTCTCCCTCGCTGTTTGCTAAGCCTTTGACAACTACTGAAAATCTATCATCATCCATTTCCGAACCTATTCTCCTGGAAGGAAGTAGTAGTTTACAAGAACCGACTGATAACCAACTGCAGCATGAAGAGCAGcaccagcaacaacagcaaaataattCTAACTATGTTGAATATCCGTTTAGTTTTTTGTATGGCGGCGAGGCAAATCAGCAAGGAGACGAAGATAAAAATAACATCCCTGCACCAATATACTGCACAGAGGATTTCAACAAGTACAGTGCAAGTACAAGTGGAGGAAATAGTGCCAGTTGCACCTGGTATCAATCGCAAAGTAGTGAAAATGACTTCGAAATTGACGGGAAGGGTAGCTATTTGGACTTGGATTCGTGCAAGCGAAGCACTTCATTTGCAGCAGCCACTGAAGGTAGCATGCCAACATCGGATGCACTCAATATAAGGACAGACGAAAAGATGCCTGCCAAAGGTGAGATCTCGGAGCAGGAAAGTAATTGCGGTGTGGAGAACTCATGGAGCCAACCGctttACAACGAGTTTTCCGTTCGGTTCGTGAACCCCTATCCAAACTTTATGTCCAACCAAGAAAGCTGGAGCCACGACCACTATTTTCGTCCTCAGGACCTAAGTTCTTCCGTAGAGACGAAGaaTTTTGCTTTACGACTAACCGAAGAATCGCCGCCAGTCGTTGACTCTCTACCATCAACATCGAAGCGAAGGAAGATAGCAATCGTGAAGACTCCTCGCAAGAAGAACTTCCAATGTGCTCATTGTAACACACACTTCCCATTGCTCAAGGAGAAAAACGCACATATGATAAAACAGCATGGATATAAGCGTGTTAACCGACGTCTTATACGTGACCCACCGACTTCAACAGTAACAACGGCCACACTGAACACAGCCCAAGCAGATGGTGCTTCCGCTTTGCACCTTGGTTTGGAAGGACTTATAACACCACCAGCATTACCAATCACCGAAGATGAAGATTCAAAAGCGACCATTGTCAAATTGGAACAAGAGAAGCCGGAAGAGTGCAAGCTTGCGAGTGTACCATTGAGTAGCACTAAAGTGTCTTCGTCATCGTCAACAAACACTGCAACAAATGCATCGCGCACGAAGTATGACTCGATGCGAGCACGAGATAATCGCATGCTTATTAATTTCAATCTCAGTGCTCTGAATGTGAAAAACGAGGGCGAAGCACACAACTACTACATGGAATCTAAATCGTCATTCTGTTGCTTCGTATGCAAGCGGGACTTTCTTACTGTTAAACTATTTGACGAGCATTTGGTTGAACATCCAGCCGAATGTTTTACGTGTCACAAAAAGTTCACTAGATGGAAGAACTTTATGGTTCATCTGAAACGGCATCTGGGATGGAAAGATTTTGGATGTACGTATTGTGACAAGAAGTTCGTTATACGTAGCGCTTTGGTGGAACATATGCGTATGCATACTGGTCAGACTCCCCTTAAGTGCAAGGTGTGCGGGAAGAGTTTCAAACGTTATTCGAACCTGACACAACATCGGAAACGGCACGGCACTAAAACAATTCGCACCAAAGAGTATGTTTGCTACTGCGGTGAAGTGCTTCCGTCAAAAGCTCGTTTTCTTTGGCACAAAGAGACACACGACGTAAAGCCAAAATGTTGTCCCTATTGCAGAGACAGATTTGTGCACGCTAACAGCCTGCGACGTCACATAAGGCTTGCGCACTCTGACAAATTTGACTACACCGAACCTATGGAGTGCCCTATGTGCAAACAAATCTATGCTAAGTCTAGCATTAAGGCGCACATGGCGACACACTCAATGGACACACAGCATGAGTGTCTAATATGTAACAAATCGTTCAGCACCAAATGGAATTTAAAGATCCACAACTGGGTGCACGCCAACCGCACAACCAAGCCTTTTAAATGTAAGCAATGTGTAAAGGCTTTTGTACGTGAAGTCGACTACAACAACCACATAAACTCGCACAAGCAAATCAAACCGTACACATGCGAGCACTGTGGTTGTAAGTTTATAAGAAAATACAACTACATCCGACACAGACGTGAGCATCATGGCAATAAAAAGTTCACCTGTGATCTCTGCGGCAAACTTTTCCACCGGCACTACTATCTAATCGAGCATCGGCGCATCCACACTGGGGAACGGCCATTTCAATGCACGATATGTGGTAAAAGCTCCACAACAAAGACAAACCACAACAAACATTTGAAGATTCATCATTCGCGGGATCCCTTCACATCGGAGGCGTAA
- Protein Sequence
- MAGNVQCPVCTLFLLPGMNLSDHLETHPKEQVIKALVQMSLKSESSEPATPETPKKANKIAVPEDNDTNQGEENERDSPNSEMSGCMSSSSGAPIREEINSKLDDGRDNCAPHTPMPPNVMSNTQVGYVFENNSNSSSSSSNTFFGPPSTYYHQQQHQQHQQHNHHHHHHQQQQSQSQQQQNLQNYQSYPRFPQGGNNNLMGSGLAQPPMRLFSYQQPPKPLQPPPAYGAAISQLRSQNSQNMMSHNINRPLYSPTNYTIPSPTSLSMSSASSTSTPSRLPPPLPPPPLNQRYQANFEQIETNFNESGETNMSPRRRSMTPPIRPPPQLYRSPQSSSNAQYSRQSSSPYSVMSGSPSVLRYAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDEDDNMSEHGSNSEDIKLMEDDRQNEWSSEGSSNQGQTTQLREQLHQKKSAITVLSDVQLDLSEYLDLVGNIFASGKVAKNRTELIKVEKFEPDEVKEEMGQTICLDDDDDDDLILNTNEQKVEHVEDEKQPFGTEPTFSPHCLAEAFSKTLIADSLSSSSSSTSLSSAPIVTPVTTSVIRLAANVTSKSTIHTTATTMFKEFVEDATFDKPTMTKVEESSDTVKSDESQEPVERIEQGIKTPSKTPSQEDLELSGTSSLINKTEEENKTANLENSSPQNQDENLTTTPLKQIKKEVSSPIPSFQSAVKRPIKKLPKKLIIKPKSKETTTPRSETSQPQQDPIADPIPPIAIQITTPTPSSSPLPSTSSASSTVELPKEVSKEEEEEKDLEPQDEINIIKTESLSTTTSDSVLMTPLFADADEILPPDDDSPQPSTSSSSIVFPEEEKKALELLTSDKKKPTADLTAFFDECLKKEDEEDHPMHSIFGMDIGNTVETLNEPLTPPPTTEFPSPSLFAKPLTTTENLSSSISEPILLEGSSSLQEPTDNQLQHEEQHQQQQQNNSNYVEYPFSFLYGGEANQQGDEDKNNIPAPIYCTEDFNKYSASTSGGNSASCTWYQSQSSENDFEIDGKGSYLDLDSCKRSTSFAAATEGSMPTSDALNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNEFSVRFVNPYPNFMSNQESWSHDHYFRPQDLSSSVETKNFALRLTEESPPVVDSLPSTSKRRKIAIVKTPRKKNFQCAHCNTHFPLLKEKNAHMIKQHGYKRVNRRLIRDPPTSTVTTATLNTAQADGASALHLGLEGLITPPALPITEDEDSKATIVKLEQEKPEECKLASVPLSSTKVSSSSSTNTATNASRTKYDSMRARDNRMLINFNLSALNVKNEGEAHNYYMESKSSFCCFVCKRDFLTVKLFDEHLVEHPAECFTCHKKFTRWKNFMVHLKRHLGWKDFGCTYCDKKFVIRSALVEHMRMHTGQTPLKCKVCGKSFKRYSNLTQHRKRHGTKTIRTKEYVCYCGEVLPSKARFLWHKETHDVKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPFKCKQCVKAFVREVDYNNHINSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -