Msca022248.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- znf711
- Assembly
- GCA_949752695.1
- Location
- OX456985.1:27052114-27056280[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.043 11 8.5 0.1 3 23 216 237 215 237 0.95 2 13 0.6 1.5e+02 5.0 0.5 5 23 247 266 244 266 0.87 3 13 0.0062 1.6 11.2 3.0 1 23 273 295 273 295 0.98 4 13 0.0099 2.5 10.6 3.7 1 23 308 330 308 330 0.98 5 13 1.5e-05 0.0039 19.4 5.9 1 23 336 359 336 359 0.98 6 13 2.4 6.2e+02 3.1 2.3 2 23 372 394 372 394 0.94 7 13 0.057 15 8.2 0.7 1 23 401 424 401 424 0.88 8 13 0.00022 0.058 15.7 2.5 2 23 432 454 432 454 0.95 9 13 1.4e-05 0.0037 19.5 3.1 1 23 460 482 460 482 0.97 10 13 2.3e-06 0.0006 22.0 0.0 2 23 488 509 487 509 0.97 11 13 0.00014 0.036 16.4 4.2 1 23 515 537 515 537 0.98 12 13 0.00026 0.066 15.6 3.9 1 23 542 564 542 564 0.98 13 13 0.38 97 5.6 2.3 1 23 569 592 569 592 0.92
Sequence Information
- Coding Sequence
- ATGGAAATATCAACCTTTTGCCGTGTTTGCACGAAATCTACTTTCCTAGAATACATTGATTTGGATACCCCATTGAATGATACAACTTACTTGGAATGTTTCAACTACTGTACAAGACTGGACGCAAAACTTCAAGATGCTGCTCCTAACACAATATGTTTATCTTGTGGCGAATCATTACAAATAGCATACGAATTCATAAAAACTGCACGTGAAGCTGATCGTTTTCTTCGTGAGAATTTTGTCATATCAAAAGACGATATCAAAGGCGAACAACCTTTCTTAAATgAGACAATTGTCGCGAATCCATTTAACAATTCTAAGCTGACTGAAGAGGAAGGGCACGGATTTGTTTGTTTAAAAGATGAGCAAAAGTATATTCAACCCAAAATTAAACTGAATTCAAATGAAGCTTTACAACAACATAACATGAACCAGAGTGTATTGTTGAATGAAGAAGCTTTAATTGTGGATATTATTGAAGAagacaacaaaatattttacgAAGAGGACTTTGAGGATACTAATGAGGAAATGGAACCACAAGATATCAAGTCGTTTGAATCCGAAGAAATTAATGATTCGTTTTTGACAATGGACTTGCAGAAATACAAGCCAAAGAAGATATATAAAAATATCAACATTTGCAGATTGTGCGGAGAggtgtttgaaaataaattgaaagtggCCTTGCATCAAGATACTgatcacaaaggaATAGGTGAAGGAGTATGTATTACTTGTGGACAATTGTTTCCCAACGAAAAATGCTTAAAAAATCACGTAACGGAAGCACATGCACCGCAGCTAGGTCGATTTCAGTGTCAATACTGTCCTAATACTTTCACAATTAACACTTTTAAAACTCATATGAATACTAAACATCCTGAAACTTTAATAACTACGAAAAAAACAAGTGGTTTCCCATGTAAAATTTGTTCGCTTCACTGCGGAAGCCGTAATCAACTCAAAGATCACCTAAACTCACATACTGGAGAGCGACCTTACCAATGTGACAAATGTAACAAATCATTTCATTCTAATTCCAACTATCGAAGTCACTATAAGCGAATCCATGAATTGGAATTGGACAACAATCTAGCAGAAActagaaaatgtaataaatgtGACGACTTTAGTACAAACAACAGAAAATTATGGATCAAACATAgaaacaatcattttaaatatAAGGCTAAATATCTCTGCGCATTTTGTCCATCGAAATTCAGGACGTCGAGATACCTGATGTCTCATGAGGATTATGCGCATGGTGACAAAAAAAATGCACCACAATGTCATATCTGTAATAAAAAACTTCGAACCAAAACTTCATTGGCAAAACATTATGCGAGTGTCCATTCCAACGAGCGCACATTCCAGTGCAAAGAATGTCACAAAGCTTTTAAGTCGAGAGGTACACTATTAAACCATGAAAAACTACATTATGATAGAAATATACCATGTCCAGAATGTGACAAAATGTTTACGGCGAGAGCTGATTTGCGAGTACACCTTCGAATTCATACAGGCGAGTTGCCATTTGAATGCCATTTGTGCGACAAAAAATTTCGAATTAAATCGAGGCTAACGTATCACTTAAGAGAACATGAAGGCTATGTATACAAATGCACACACTGTCcggaagaatttaaaaaaagaccaCAGTTTCGAGATCATTTATTCACGCACAAAGGGTATCCATATATTTGCGATTATTGTCAGATTGGACACTTAAGGAAAAAAAatCTATTCCGCCATGTAAGGAGAGAACACGGTATTAATATGACCGAGGAAGATTTAAGGCAgaactttataaaaaataacgTAAAATATTTACACTCCCGCTCTAAAAAATCACCGCATGAAAATGACATGATTGCAGAAATGTAA
- Protein Sequence
- MEISTFCRVCTKSTFLEYIDLDTPLNDTTYLECFNYCTRLDAKLQDAAPNTICLSCGESLQIAYEFIKTAREADRFLRENFVISKDDIKGEQPFLNETIVANPFNNSKLTEEEGHGFVCLKDEQKYIQPKIKLNSNEALQQHNMNQSVLLNEEALIVDIIEEDNKIFYEEDFEDTNEEMEPQDIKSFESEEINDSFLTMDLQKYKPKKIYKNINICRLCGEVFENKLKVALHQDTDHKGIGEGVCITCGQLFPNEKCLKNHVTEAHAPQLGRFQCQYCPNTFTINTFKTHMNTKHPETLITTKKTSGFPCKICSLHCGSRNQLKDHLNSHTGERPYQCDKCNKSFHSNSNYRSHYKRIHELELDNNLAETRKCNKCDDFSTNNRKLWIKHRNNHFKYKAKYLCAFCPSKFRTSRYLMSHEDYAHGDKKNAPQCHICNKKLRTKTSLAKHYASVHSNERTFQCKECHKAFKSRGTLLNHEKLHYDRNIPCPECDKMFTARADLRVHLRIHTGELPFECHLCDKKFRIKSRLTYHLREHEGYVYKCTHCPEEFKKRPQFRDHLFTHKGYPYICDYCQIGHLRKKNLFRHVRREHGINMTEEDLRQNFIKNNVKYLHSRSKKSPHENDMIAEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -