Basic Information

Insect: Melanostoma scalare
Gene Symbol: -
Assembly: GCA_949752695.1
Location: OX456985.1:3198905-3200958[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-05 0.0045 19.2 1.8 5 23 272 290 269 290 0.94

2 9 1.7e-07 4.3e-05 25.6 0.4 1 23 296 318 296 318 0.98

3 9 0.00016 0.042 16.2 3.3 1 23 324 346 324 346 0.98

4 9 3.8e-05 0.0099 18.1 3.5 1 23 352 375 352 375 0.97

5 9 9.3e-05 0.024 16.9 0.8 1 23 385 407 385 407 0.97

6 9 8.9e-05 0.023 17.0 2.6 1 23 478 500 478 500 0.98

7 9 0.077 20 7.8 5.0 1 23 508 531 508 531 0.97

8 9 0.0035 0.91 12.0 0.0 3 23 541 562 540 562 0.94

9 9 0.0083 2.1 10.8 2.8 3 23 569 589 567 589 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-05	0.0045	19.2	1.8	5	23	272	290	269	290	0.94
2	9	1.7e-07	4.3e-05	25.6	0.4	1	23	296	318	296	318	0.98
3	9	0.00016	0.042	16.2	3.3	1	23	324	346	324	346	0.98
4	9	3.8e-05	0.0099	18.1	3.5	1	23	352	375	352	375	0.97
5	9	9.3e-05	0.024	16.9	0.8	1	23	385	407	385	407	0.97
6	9	8.9e-05	0.023	17.0	2.6	1	23	478	500	478	500	0.98
7	9	0.077	20	7.8	5.0	1	23	508	531	508	531	0.97
8	9	0.0035	0.91	12.0	0.0	3	23	541	562	540	562	0.94
9	9	0.0083	2.1	10.8	2.8	3	23	569	589	567	589	0.95

Sequence Information

Coding Sequence: ATGAATTTTAAAGTTGATATTTCTGTGTGCCGTGTTTGTATGAAATCAGGAATTGGCATTTCATTATTTAAGGACTCGGCGCTGATGGAAAAGTTTGTTTACACCACCAAACTCAAGGTCAAAGAGGACGATAGCATGCCAGGAATCTTGTGTGAGAAATGCGTACCACGTCTTAAAATGGCGTATGATTTCTGTCGCTCCGCTAATGTTGCTGAAAAGCATCTGCGGCAGTTCATTAGCAAGATGATGAGTGATTTCCAGGAAGTAACGAAGACTTTAcccgaagaagaagaggaataCATTTTGATGGAAGACTTTGAAACAGACGAAAATATCATAACTGATGAACCAGTTTCTGCCGCGACGTTGGAGCAAGTCCAAAATCTCAAAACTGAATTGGTAGCCGAGGTTGAGGTTGAAGAAGAAGTGGAAGACCAACCGCCCGAGGAAAATGTCATAACCAAGCAAGAAGGGTTCGCTTCAGAAATCTATATGGAGGAATTTCAGGAAATAATACATGATGACCAGGGtgaaacaaatttgtacttAGAAGAAGATTCCTCGCAAGAGTTGCATTTATACGAAGCCGATAGTGAAATTTTTGAGAATGAACATTTAGAAGGCGATGAAGATATGGAAATGGAAGGTGATATTGAACTCCAGGAAGTAATGTCCAACACTGAAGATGGAGatgaaaagcaaataaaaattgaaCAGAAGAAAGTAAAGTGCCGAAAATATGCTAAAAATCCAAAAAGAAACAGTGGGGAGTCGGCGGCTTCGAAGATTGAAGGTAAATCGAACATTTGCATCAAGTGCAACAAAGATTTCAGCACCAAGACCAATCTGATGAGACACATGAGCACACACGATGGTGTAAAGCCATATACATGTCCGACTTGTGGGAAGGGGTTTACTCAAAACGGATCACTAAAACAGCATATATTCATCCACACAGGGGAGAGACCGCACGTATGCAAAATTTGCCAGAGGGGCTTCACCCAAAGCAAAAGCCTCATATTCCACATGCGTCGACACACAGGAGAGAAGCCTTTCAATTGTGATAAATGCGAAATAAATTTCCGACAAAAGGACGGACTTAAGCACCATATGCAAAAGTACCACGGTGAAGGCCAAACAAAGCGGGAACCACACGTCTGCAATGTGTGCGAAAGGGTCTTATCATCAAAATATGCATTGGCTACTCACCTTAAAAAGCATGCTGCTAAGATTGATGAAGCAGAAAAAGAAGATGGAGAAATAGATAATTCCAATAATTCGTTAGGAATATCCTCTGCCCCTGCTGAGCCAAAGACAGACACAAAAATATATTCAGTTCGTCAAATAACAGCAAACTCGACTGATGTTTTGGGCGATGAGGTGGAGCACAAACTTATAAGTCATGCTGGCGCTGGGGTGCGAATGAAACAATTCCAATGCGCAAAGTGTTTCAAATCTTTCAACATAAAgcgTAACCTCCTACGACATTTGCAAAATCATGATGTGAACGCATTAGAATTGCACCAGTGTACAGATTGTTGTATTGGGTTCGATACGAAACGTTCCCTCAAATTGCATCGTCAACGTGATCACAAGGATGTTATACCCGATTTGAACAACTGCGAGTACTGCAACGCACCATTTGTGTCCGTATCAGATCTCAGCGAACATATCGAAAACGAACACGATGCCATTGATCAGAATTGCCCGCATTGCAATGAGCACTTTGACTCTCAGAAGTTGTACTACGATCATTTGCTGGAACATGAGCATTTATTGGAAAATTAG
Protein Sequence: MNFKVDISVCRVCMKSGIGISLFKDSALMEKFVYTTKLKVKEDDSMPGILCEKCVPRLKMAYDFCRSANVAEKHLRQFISKMMSDFQEVTKTLPEEEEEYILMEDFETDENIITDEPVSAATLEQVQNLKTELVAEVEVEEEVEDQPPEENVITKQEGFASEIYMEEFQEIIHDDQGETNLYLEEDSSQELHLYEADSEIFENEHLEGDEDMEMEGDIELQEVMSNTEDGDEKQIKIEQKKVKCRKYAKNPKRNSGESAASKIEGKSNICIKCNKDFSTKTNLMRHMSTHDGVKPYTCPTCGKGFTQNGSLKQHIFIHTGERPHVCKICQRGFTQSKSLIFHMRRHTGEKPFNCDKCEINFRQKDGLKHHMQKYHGEGQTKREPHVCNVCERVLSSKYALATHLKKHAAKIDEAEKEDGEIDNSNNSLGISSAPAEPKTDTKIYSVRQITANSTDVLGDEVEHKLISHAGAGVRMKQFQCAKCFKSFNIKRNLLRHLQNHDVNALELHQCTDCCIGFDTKRSLKLHRQRDHKDVIPDLNNCEYCNAPFVSVSDLSEHIENEHDAIDQNCPHCNEHFDSQKLYYDHLLEHEHLLEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -