Msca060596.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456986.1:173411380-173416621[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0012 0.32 13.4 2.2 2 23 154 175 153 175 0.96 2 10 7.8e-06 0.002 20.3 1.3 1 23 181 203 181 203 0.99 3 10 7.7e-06 0.002 20.3 1.2 1 23 209 231 209 231 0.97 4 10 6.2e-06 0.0016 20.6 1.0 3 23 239 259 237 259 0.98 5 10 3.7e-05 0.0095 18.2 1.1 1 23 265 289 265 289 0.93 6 10 3.7e-05 0.0096 18.2 1.6 1 23 439 461 439 461 0.96 7 10 3.1e-06 0.0008 21.6 0.9 1 23 467 489 467 489 0.98 8 10 0.00049 0.13 14.7 2.1 1 23 495 517 495 517 0.98 9 10 2.5e-05 0.0065 18.7 0.2 3 23 525 545 523 545 0.97 10 10 0.0012 0.3 13.5 0.7 3 23 553 575 551 575 0.91
Sequence Information
- Coding Sequence
- ATGATTGACTTATTTGGAGATCCAAGAACTACTTATAAATTGGAAATATGTTGTGGCGTGACGATTTTAAACCTTCCAACGTTGCCGTCAACAATTTGTAAAAAATGCGTAGATGTCCTAAATGTGGCGTATGGCTTTCGTGTTCTTTGCCAAAATTCACAAGAGTATCTAAATGatcataaaatattttctgaagACAACAAAGACGAACTCATCTCCGAAAAATCTTATATACCTGacctaaaattgaaaaaacaaacgGAATACATTGATGAAATAAAAGATGATTATAGTCAGGAAGAAGAGCACTTTCATGATTATGAATCGGTCCCTGTACAAAAAATAGAGGAAAACACtactgttgaaaaaaaaattgaaaatgaggAAACTAATGTGAAGTTAGCAAAGAAAACTCGCTCAACTAGATcttcaaaaaagtcaaaatcacCTATCACTCTCATGTGTAGTATATGCgggaacatttttaaaagcagaGCCACATTCTCCTACCACATGAAgcatcacaaaaaagaaaagcaatatGAATGCGAAATCTGTTCCAAACGTTTCATGCAAACTTGTGAACTTCAGGCGCACATTCGAGTACATACTGGAGAAAAACCATTTGCCTGCCAATACTGCGAACGTAGGTTCAGTGATAGAAGTGGAGTGACGCGGCACGAAAGAACCCACACAAACGAACGGCCATACGGTTGTACAATATGCGGGACTCACTTCTCTTATTCGGCAACGTTAAAAATACATCAAAGAGTACACACCGGTGAAAAACCTTTTAGATGCGATATCTGCGACAGAGGCTTCGCAGAGCGACATAAGTTGAAGGCTCACCTTAATACAATTAGACATGCAGAGATCCTAAACATACCATCATTGCCATCAACAATTTGTAAAAAATGTGTAGATATACTGAATGTAGCATATGGTTTTCGTGTTCTTTGTCAAAGGTCACAGGAGTATTTAAATGAGAGTAGTGCATATGAAAAAACCAACACGACAGATACACCACAACTAAAGTCGAAAGGCGAGTTGGAATACTTCAAAGAGGAGGAAAAAGACTATATAGACCAATCAGAAGAGTATTTAGAAGAGGAAACAGATATTTTCGAAAACTATGAATCGGACTCTGAAAAACAAGACTGTGATGACAAAGCAAACATCTCTAATCTTTTAACCAAGGCCCCAAAAAAGCCCAAAAACTATGAATCGGACTCTGAAAAACAAGACTGTGATGACAAAGCAAACATCTCGAATCTTTTAATCAAGCCCCCAAATAAGCCTAAATCAGCAATTACTTACTTGTGCAGTATATGTGGGAATATATTCACAAAAAACTCTTCATTTTCATACCACATGAGACGTCatggaaatgaaaagaaacacCAGTGTGAAATTTGCAACAAACGCTTCTTCGACTCAGGTGTACTTAAAGCGCACATTCGAGTACACACTGGAGAAAAACCATACAGTTGCAAATATTGCGAACGCACTTTCATTTCCAGAAGTAGAGTGTTTGACCATGTAAAatCACACACAAAAGAACGGCCGTATGGTTGTACAATATGCGGAGCTCAGTTCCCCTACTCTGCAACGTTGAAAAGACACCAAAGATTACACACTGGAGTAAAACCTTTTTGGTGTGATATCTGCAACAAGGGCTTCCCAGAGAAACATAAGTTGAAGGAACATTTGGCAACTATAAGACATGCAAAAATGGCTGAAAAtgttaaaagttag
- Protein Sequence
- MIDLFGDPRTTYKLEICCGVTILNLPTLPSTICKKCVDVLNVAYGFRVLCQNSQEYLNDHKIFSEDNKDELISEKSYIPDLKLKKQTEYIDEIKDDYSQEEEHFHDYESVPVQKIEENTTVEKKIENEETNVKLAKKTRSTRSSKKSKSPITLMCSICGNIFKSRATFSYHMKHHKKEKQYECEICSKRFMQTCELQAHIRVHTGEKPFACQYCERRFSDRSGVTRHERTHTNERPYGCTICGTHFSYSATLKIHQRVHTGEKPFRCDICDRGFAERHKLKAHLNTIRHAEILNIPSLPSTICKKCVDILNVAYGFRVLCQRSQEYLNESSAYEKTNTTDTPQLKSKGELEYFKEEEKDYIDQSEEYLEEETDIFENYESDSEKQDCDDKANISNLLTKAPKKPKNYESDSEKQDCDDKANISNLLIKPPNKPKSAITYLCSICGNIFTKNSSFSYHMRRHGNEKKHQCEICNKRFFDSGVLKAHIRVHTGEKPYSCKYCERTFISRSRVFDHVKSHTKERPYGCTICGAQFPYSATLKRHQRLHTGVKPFWCDICNKGFPEKHKLKEHLATIRHAKMAENVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -