Msca004167.2
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:64585676-64591251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.2 3.1e+02 4.0 1.7 3 23 181 201 180 201 0.95 2 19 0.6 1.6e+02 5.0 0.1 1 23 208 233 208 233 0.89 3 19 4.2 1.1e+03 2.3 2.8 3 19 243 261 241 264 0.85 4 19 0.66 1.7e+02 4.8 5.7 2 23 275 296 274 296 0.89 5 19 0.033 8.6 8.9 0.4 2 23 304 326 303 326 0.93 6 19 0.00035 0.09 15.1 3.6 1 23 331 353 331 353 0.97 7 19 0.22 57 6.3 8.2 1 23 359 381 359 382 0.96 8 19 0.00024 0.062 15.6 4.1 3 23 390 411 390 411 0.98 9 19 0.015 3.9 10.0 0.1 1 23 455 477 455 477 0.97 10 19 0.00016 0.041 16.2 2.0 1 23 482 504 482 504 0.99 11 19 0.5 1.3e+02 5.2 0.3 1 23 520 544 520 544 0.93 12 19 3.2e-06 0.00082 21.6 3.8 2 23 549 570 548 570 0.97 13 19 0.011 2.9 10.4 2.6 1 23 577 600 577 600 0.96 14 19 0.015 3.9 10.0 0.6 2 23 606 628 605 628 0.94 15 19 0.00014 0.036 16.4 0.3 2 23 632 654 631 654 0.96 16 19 7.9e-05 0.02 17.2 0.7 1 23 660 683 660 683 0.97 17 19 0.01 2.6 10.5 0.9 1 23 689 711 689 711 0.98 18 19 0.00021 0.053 15.9 4.8 1 23 717 739 717 739 0.99 19 19 0.002 0.52 12.7 0.1 1 23 745 770 745 770 0.95
Sequence Information
- Coding Sequence
- ATGGTTTTGAAATGCTTGCGATGCAGTATTTCTTTACAAAATGATTACCAACTAATTTTCGATGAAACTGGCATTGAACTACAGCTGGACAGACTTCTGAGTGAACACTTCGAAATTTTCGTTGTGAAAGATTCAACTAAAGACCAGGCACTTTGTGAAACTTGTGTTAATGACCTCATTGAAGTGTATGATCTTACTCAAAagttgaaagaagaaaaattagaaCCACAGAGTTTGGAACCCCATGAGACTGATGTAAGCAGCATAGAAAAAGAAATACACGATGTGTGCAGTCAACAAATTAAGCAGGAAGATGTAatagaagaaattgaagaagagcCTATAACAGAagatattgaaataattgaagaaaacaaCTCATGTAGCGACAACGAGCAGTTCCATGGATTTCAGGAAGCAGATGAAAATATTGAGATTTCGACCGATGACTGCAATTTATATGGACTCAGCATCCAAGaatatttacaaaaagtaaTCAAAAGTGATTTAGAGGAAATTGTTTTTGACCAAAACTCCGACTGTAAGTTATGTGGAGAAACACTGCATTCTCACTCCGACGTACTTATGCATGCATCAAGCCACGTAAAAGAATCTAATCAGTTTCCGTGTGTTTTTTGTAATGAGGTAGAGTATTTCGAATCAACTTCTAACCTGGCTCAGCATATAATCTTGAAGCACTATGACTTAAATACAATTACCATTTATTGTTTGTGCATTGAGTGCGAAAAGAGATTTTCTTCGTTTCTTGAATACAACAAACATTCGTGCTATAAGCAGACTGTAGGGTCTCGTTTACTGCAGCAGTGCGAAACCTGCCAcaagaaattttcttcaaacaaGAGGTACCGTTTTCACTTACAATTCCATTTGGAGAAACGAAGACCAAAAGTCTGTTTCATCTGcgatattttattttcgaacgAAAATGACTTCTTTGAGCACATTATGTTTTTCCATGAGGAAAGTGGATTCATTTGTAAAAAATGCGATCGTGTTTGTACAACAAAAGATCTATACGACACTCACATGAAACTACACAATGCTATCCGATCATATCACTGCCAGTACTGTTCGAAGTCCTATCTGCACAACCAAATGCTGTCAAATCACATTCAACGGCATCACTCTGACAATCAGTCCAATTGgtgtaaaatttgcaaaaagacACTGGCAACAAAGCATCTCCTAACGAAACATATGCTGACAAAGCACCTTGAAGAGACTGAAAATGAAGTgtatgtttgtgcaaactgcgGCTTTGTTGGAAATTATGAAGAAGATGTGATTCAACATGATTCATGTCAAGGAGCAGAAATTGGTATGGAATGCATGAAGATCGCTTACGCTTGCGAGTTTTGTGAATCGGCCTATAATAGTGTAGAAAACTTGAAAGCACATCGTGCAATCCATGCCGAGGATCAATACAAGTGTTGGATTTGTGAAAGTAAATATTCGACATACAAAAGTTTGAAAACTCACATTCAAACACATGGCAATTATGAACCAATACAAAAGCTGTTTGCAGTCAACAGGCATTACGTGTGCAGTTTCGATTCTTGTGAAAAATCATACCTCAGCTGGCCATCTCTGCGTGCTCACAAAACAGAACACACCAACAAGTTGGTATGTCAAATTTGCAACAAATCCTTCAAAACGCAATCCAAACTTCATAATCATCTTAAATCTCATGACGACAATGTGATAGAATTCCAAtgtgaattttgttttaaaatttgtacTTCACAAATGTCTCTTGCAGTCCATACTGCACGAAAGCACAATAATAatcacaaaaccTGTCCAACTTGTAAAGCTACTTGTATTACGGAAGAAGCACTCAAAGAGCATATAGAATTGAATCATCTTCAAATGGAATGCGAACAGTGTGGCAAGATAACCAAAAACAAGAGAAACTTGGATCTTCATATACAAATGATTCACTCTAAAGTGAAAAGATACTTTTGCAGCACTTGCAACAAGGGGTACTTTAATAATAGCGATCTTAAAGTTCACGAGAGAGTAGCTCATGCTGATACTAATAAGTTCAAGTGCAATTTATGCAACTTTAGCTCGAGCTATGAGGCTTCTTACAACGTTCACCTGCTGAATCATGGGAAAAGAAAACCGTACAAATGTGGGGAATGTTCGAGAGAGTTCACAAGAAAATCTTGTTATAAATTGCATCTTCTGAGGCACTCTGACGTAAAGCCGTTTTCTTGTCCGGTTGAGGATTGCGGCCGAAGTTTTGTGATGAGAGGCATTCTGAATTCGCATATGAAAGATGCACATCCTGAGGTCTTAGAcgaaaccaaaaccaaaaaaagttcCTATCGTTCAGCGAAACCAAGAAAACCCAGCACGAAAGCAAATAAACCGGAGAATGAAACTTCAATTTCTCCTAATTCAGTGATAGTTGAAGAGCTATCTGAAAATGGATTCTTAGAAATGGATGATGACGAAGGAGGCATTGTTATGTACGATGTTACAAATGCTGAAGAAGAAATTGTTTTAGAGTGCTCTGAAGAAGGtgaattttatattaattaa
- Protein Sequence
- MVLKCLRCSISLQNDYQLIFDETGIELQLDRLLSEHFEIFVVKDSTKDQALCETCVNDLIEVYDLTQKLKEEKLEPQSLEPHETDVSSIEKEIHDVCSQQIKQEDVIEEIEEEPITEDIEIIEENNSCSDNEQFHGFQEADENIEISTDDCNLYGLSIQEYLQKVIKSDLEEIVFDQNSDCKLCGETLHSHSDVLMHASSHVKESNQFPCVFCNEVEYFESTSNLAQHIILKHYDLNTITIYCLCIECEKRFSSFLEYNKHSCYKQTVGSRLLQQCETCHKKFSSNKRYRFHLQFHLEKRRPKVCFICDILFSNENDFFEHIMFFHEESGFICKKCDRVCTTKDLYDTHMKLHNAIRSYHCQYCSKSYLHNQMLSNHIQRHHSDNQSNWCKICKKTLATKHLLTKHMLTKHLEETENEVYVCANCGFVGNYEEDVIQHDSCQGAEIGMECMKIAYACEFCESAYNSVENLKAHRAIHAEDQYKCWICESKYSTYKSLKTHIQTHGNYEPIQKLFAVNRHYVCSFDSCEKSYLSWPSLRAHKTEHTNKLVCQICNKSFKTQSKLHNHLKSHDDNVIEFQCEFCFKICTSQMSLAVHTARKHNNNHKTCPTCKATCITEEALKEHIELNHLQMECEQCGKITKNKRNLDLHIQMIHSKVKRYFCSTCNKGYFNNSDLKVHERVAHADTNKFKCNLCNFSSSYEASYNVHLLNHGKRKPYKCGECSREFTRKSCYKLHLLRHSDVKPFSCPVEDCGRSFVMRGILNSHMKDAHPEVLDETKTKKSSYRSAKPRKPSTKANKPENETSISPNSVIVEELSENGFLEMDDDEGGIVMYDVTNAEEEIVLECSEEGEFYIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -