Msca006042.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:91691068-91694414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 3.9e+02 3.7 0.4 1 11 16 26 16 29 0.90 2 13 0.0062 1.6 11.2 0.6 1 23 303 326 303 326 0.94 3 13 2.7 6.9e+02 2.9 3.7 1 23 335 357 335 357 0.97 4 13 0.00013 0.035 16.4 4.2 1 23 364 386 364 386 0.98 5 13 6e-06 0.0015 20.7 0.8 1 23 392 414 392 414 0.99 6 13 0.00014 0.035 16.4 1.2 1 23 421 443 421 443 0.97 7 13 0.00011 0.029 16.7 1.3 1 23 449 471 449 471 0.96 8 13 7.8e-05 0.02 17.2 0.3 1 23 477 499 477 499 0.98 9 13 1.4e-05 0.0037 19.5 0.9 1 23 505 528 505 528 0.96 10 13 5.1e-05 0.013 17.8 3.1 1 23 534 557 534 557 0.97 11 13 1.6e-05 0.0041 19.4 3.5 1 23 563 585 563 585 0.98 12 13 0.00036 0.093 15.1 0.4 1 23 591 613 591 613 0.96 13 13 0.00094 0.24 13.8 0.9 1 22 619 640 619 643 0.92
Sequence Information
- Coding Sequence
- ATGACTGGAATAGTCGACCGAATCGCCCACTATACAACAGAATTCTTTACATGCTATCTTTGTAACAAAATTTTTGAGGATGGTGACGAGCCTTGGCATATGTTTGAGAAGAGGATTACTGAGAATGGCTTAACCGATTGCCCACTTGCTGCAGTTCTCTCCTCCGCCCTGGGAAAGGATATCGAAATAGATTCAGTTCATTCCAAGcttatttGCGATGACTGCAACTTTGTTTTACTGGAATACGAACGAATTGAAAAGCAGTTTTATCAATTTCGATTGAAAATTCTCTCAGATTATAACAACACGGCAAAAGAAAATGGTTTTGAACCAATTTGGTTTGAGATCGGAGAAAACGAAGAGAACTTCCACCAGCTTGCAATGCCAAAGCAACAGGAAGTtgaaaatggaacttttctgcaaagtgatgaacttaaaaaggAACAAGAACCACATGAAAAAATAATCAATCAAACTCCAATAATAGAAAGCGTGGAAGAAGACCTAGAGCAGTATACAGAAAACGTTGCACAACAACCTGAGGTGGAAAATACGTCTTATGTTGATAGAGATTCTCAAGTCATTGCTGACGaaattccTTATGAGCAAATCATTGAGCAAAGTTCTGTAATAAGTTACGATGACAGCGTGGAGGACGCGATAGAATCAGCCATTGGCTACTGCAGCAGCATTGATGAAAACGCCGTGATATTACCTGATGAAATTCCTAATGTATCAAAACAAAAGCGCACCACCCGTTCAATTAAACGAGAACAAGCTGAGCCATTaggttttgattttgaattcgTTCGTGGGATATATGTTTGCGCATTGTGCCCAGATAAATCCGAACATGCACCAATGTTGTTCCCGAACCATCTCAAGAGCGTTCACAACTACAAGTTTTATGTATGCGACATATGCTACAAAGGATTCCACAAGCGCAATGAAGTCAATGATCATATGGATGAGGTGCATGCCGGTGAAGGTAAAGAAGGCGAATATCATTGTGAGACTTGTATGCGAGTGTTTTTAAATCTTCGCCAGTTTCGCATACACAAACGACTTCACTATAGTTCAACCAAACAGCATGAGTGTTCTGAATGTCACAAAAAGTATAGCTCGAAAAATTTGCTGGATGAACATATGAATATGCACACAGGCAAGAGGCCGTACAAGTGTGCGTCATGCAGTAAAGATTTCGCTTCTAAATACACACTCCAGGCGCATATGAAAATTCACACTAAGCGCCCTAGACCATTTAGCTGCGATGAGTGCGATAAGTCATTCCTAAATCAGCAGAATCTCGTGCAGCATAAAAAGCTACATTCCGGGTTGAAGTCTTTTATCTGTGAAGTATGCCATAAAGCCTTTGGTACGCAACACAACTTGGACGTGCATAAGATAGTTCATTCGGGCAACAAACCATTTATCTGTCGTACCTGTGGCAAAGGCTTCGCTCGGCGTGCTGAAATACGAGATCATGAACGAACGCATACTGGGGAAAGGCCCTTCAAGTGTGATATGTGCACAATGGCTTTCGCGCAGCGGTCAAACCTGATGACACATAAAAGAGCAACTCATTTGAACGATAAAAAACACAAGTGCGAACTGTGTGACCGATCTTTCAAAAGACGGCGTTTATTGGAATACCACACCCAGTCGGCACACACGGGAGAACGACCTCACAAGTGTGAAGTATGTAGTGCAACTTTTGTCTACCCAGAGCACTTTAAAAAGCATATGAGAATTCACAGTGGTGTGAAACCGTATGCGTGTGAAGTTTGCGGAAAACTGTTTAACAGTCGCGATAACCGAAACGCACACAGATTCATTCACAGCGAAAAAAAGCCCTACGAGTGCCTGGAGTGTGGAATGGGATTTATGAGAAAGCCACTTTTACTTTCGCACATGAAGCACACTAAGCATGTGAATGATACTATAATTGTTAATCAACCACAGATAAGCCACAAAGAAGTTGCAGATGTTGATAAGGAGTTTTTAGATGacgatgaagaagaagatatgGTTTTAGAGAGTCATCAGATTGAAGAAGAATGTGACTACGACGAAGTTGTGACGTCGGACACAATTTTAGTGGAAGATGGAAATGGTCGGTATATCAAAGATGAAGATGGAGAAGTAAAGTACCTCCAGTTCACAGAAATGGATAAAGATGGCCAAGCCAGATTCACTTGGGTGGATATCGCCGAGGAAAAAGAAGACGAAAATTAG
- Protein Sequence
- MTGIVDRIAHYTTEFFTCYLCNKIFEDGDEPWHMFEKRITENGLTDCPLAAVLSSALGKDIEIDSVHSKLICDDCNFVLLEYERIEKQFYQFRLKILSDYNNTAKENGFEPIWFEIGENEENFHQLAMPKQQEVENGTFLQSDELKKEQEPHEKIINQTPIIESVEEDLEQYTENVAQQPEVENTSYVDRDSQVIADEIPYEQIIEQSSVISYDDSVEDAIESAIGYCSSIDENAVILPDEIPNVSKQKRTTRSIKREQAEPLGFDFEFVRGIYVCALCPDKSEHAPMLFPNHLKSVHNYKFYVCDICYKGFHKRNEVNDHMDEVHAGEGKEGEYHCETCMRVFLNLRQFRIHKRLHYSSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCASCSKDFASKYTLQAHMKIHTKRPRPFSCDECDKSFLNQQNLVQHKKLHSGLKSFICEVCHKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDMCTMAFAQRSNLMTHKRATHLNDKKHKCELCDRSFKRRRLLEYHTQSAHTGERPHKCEVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHKEVADVDKEFLDDDEEEDMVLESHQIEEECDYDEVVTSDTILVEDGNGRYIKDEDGEVKYLQFTEMDKDGQARFTWVDIAEEKEDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -