Msca005264.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:81780716-81797450[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.84 2.2e+02 4.5 0.2 2 23 15 36 14 36 0.93 2 23 0.049 13 8.4 8.0 1 23 42 65 42 65 0.91 3 23 0.00034 0.088 15.2 1.7 3 23 70 91 68 92 0.93 4 23 0.00083 0.21 14.0 0.3 2 20 100 118 99 120 0.93 5 23 9.2e-05 0.024 17.0 1.0 1 23 128 150 128 150 0.97 6 23 0.0047 1.2 11.6 2.0 1 23 156 178 156 178 0.97 7 23 0.0007 0.18 14.2 2.6 1 23 184 206 184 206 0.95 8 23 2.4 6.3e+02 3.0 4.7 2 22 213 233 212 233 0.93 9 23 0.13 34 7.0 3.0 1 23 489 512 489 512 0.97 10 23 0.95 2.5e+02 4.3 1.7 1 23 536 558 536 558 0.91 11 23 0.027 7 9.2 1.6 1 23 566 590 566 590 0.97 12 23 0.0004 0.1 14.9 0.9 1 23 594 616 594 616 0.98 13 23 0.0018 0.46 12.9 0.3 2 22 628 648 627 648 0.93 14 23 0.0004 0.1 14.9 0.3 1 23 656 678 656 678 0.94 15 23 2.8e-05 0.0072 18.6 1.0 1 23 684 707 684 707 0.97 16 23 8.3e-05 0.021 17.1 0.1 1 23 713 735 713 735 0.98 17 23 0.03 7.6 9.1 0.2 2 23 1429 1451 1428 1451 0.95 18 23 0.23 60 6.2 2.4 3 23 1476 1497 1474 1497 0.95 19 23 0.00018 0.046 16.0 0.0 1 20 1516 1535 1516 1537 0.95 20 23 0.0066 1.7 11.1 2.3 3 23 1547 1567 1546 1567 0.98 21 23 4e-05 0.01 18.1 4.8 1 23 1573 1595 1573 1595 0.98 22 23 0.00049 0.13 14.7 4.8 1 23 1601 1623 1601 1623 0.98 23 23 0.42 1.1e+02 5.5 0.8 1 20 1629 1648 1629 1650 0.93
Sequence Information
- Coding Sequence
- ATGATGGTTCAAATAACAACGGACAAATCTGGCCCCAAATTGGTATGTCCCGTGTGCAATAAGGCGATGCTCTCACTCACCGGCTATGTGAAACACATGAAAAAGCATGAACCACCCGGTGGTTACTGCTGCAACTACTGTGATGAGCGTTTCTGCTTGGAAGACCATCTCAAGAAGCACAAAGATGAGAAGCATAAAGTCCTGGCATGTCAGATCTGTCACGAGACCTTTTCTACACCCCAAGAGTACCGCACTCACATTAAAGACATCCATCACGGTATCGATCGGCGAATGTTGAAGTGTGATAAGTGTGACATGGAATTCAAAACAGCGCAAGCTCTCAAAAGGCATAAGGGAACTGCATGTGGTACAATAAAACCACATCCATGTGACGAGTGTAATATGGCATTTTACACtaaatacaatttggccgaGCACAAAAAGATTCACAAGGGAGAGAAGAAGTTCTGTTGTAGCTACTGTGGGAAGAGTTTTCTCAGCAACGGCAGATTGGTGATACATGAAAGGAGTCATACTGGAGAAAAGCCCTACAAGTGTGATGTCTGTGGAAAATGTTTTGCTCATCGCGAAAGTATTGTCACTCACTCGTCGATCCATACGGGGGTGAAACTGGTTGTGTGCAAATGCTGTGGTGCCCGATTTTCATGCCATTCAAATCTCATTAAACACAGAAGGACAAGACCGGATGCTTGTGGTCTTTCAATGTATGATTCCACTAAGGAAACAAAACGAAACGGAATTTCGAGAATCCCTGCAAGTCTGATGTCGTCTGAAATTAAAATCGTTCGAGCGAGTAAAGTGATAAATCCTACCGAAGAACAAAAGACAAAACCAGTTAAACCAAAGGCAAAGCCTAAAAAACCCAAATCCGACTCCGAGGACGAAGAAGTTATCATATCCAGACCAAGACGAAGCCTACGctcaaaggaacaaaaaaatcCAGTTGCTTTCGAAACAATTGAAATCAAACCCCCCGAATCACCACCGAAACAGTTGGACTTTGACTCCGACAGCAATTGCGATGATCCAGGGTTTGATATCACCGCTCATTCAGATAATTCATCTGATAGTGACAAAGAAGAAGTCAAATTCAAGAGTTTTGAGGGGGATCTCATTGAAACCCCAGTGAAAACCGAGGAAGAACATAGAGTTTTCGAAGACAATTTCTTCAAGAACCCCGACAGTATTTTGGAAACAATTCTGGCTGAGAGCGACCTGCAAGTCAAAGATGAACCGTTGGATGaagttaaagaagaagaagaaaaacaacaaatatgCGAGAAAAATGTCGATCTTCCCCCACCTCAAGAAGAAGTTGAAttcgtacaaaaaaaaagttcaacaaaAGACAACTCGAATGCGGAAGCACCAGAACGTCCGAAACAGAAACGTCAGCGAGCAGCTTTGCGCAAAAAGCTACGCTTCTTCAAAAAAGATCGCATTTATGACTGCAAATACTGCGTTAAGGTCTATCACATAAGGAAACCTTACGAAAAACATCTCCGAACTACACATAACTTAACCGAAACAGAACTTCGGGATATTTTTAAAGAGGAGGACAATGACATTCCAGACCATTTGGTCCATCGCTGTCCGATTTGCTCAAAAATCTATCTAATGGCGAAAAGACTGAAGACTCATATTACTTTTCATGGAGCTGATGGAAGCCTGGTCCATAAATGCCCGGGCTATTGCAAGATCTATTTCCGAACTAAAGAAGAAGCTATGGATCAcgctaaaacaaaacacaaatcgTTCTTTTACTGTGACATTTGCGACAAGTATTCGCAATCACCGGAGTCCCTCAAAATTCACAAACGCACCCATTACCAGCAGAGGAAGCAGGCAAATCGGAATTTAATTTGCGATAAATGCGCCAAGTCGTTTGCCAGTCGGACTTCTCTAAACGATCACACTAGATCGAACTGTGGCAAAGATCCGCTCTATCAATGTGAAATTTGTGACAAGAAGTTTAGCACAGCTGGCATCTTGAAGACGCACTCATTACTGCACAAGGATGAGACCCCATATGTATGTGATAAGTGTGGCAAGGCTTTTAAGATTCAGGCGCAATACAAGACGCACATTAAGAATAAACACACCGATCATAAACCTTTTAAATGTGATctCTGCCCGAAAGCGTATCCTTATCGAGAAAGTCTGCTTACACACATGGCAGTACACACGGGACTAAAGCGTTATGCCTGCAATGGATGCActgAAGCAGACTATGATAGCTGTAGTGACCTCATCGAAAAGACGGAACCTGAAGTACAAAATACTCAATGTGGAAGACCCCTTAATGTGGACGAGGATGTGTGTGTACAAAACAGTGTGGACTCGAGGGATTCcatgtttgaaattttaaatagtattaaagaagaagaatACGTGAGCGAACCAGATGAGCTACCAAATGAAGCATTCTATAGGGAATCTTGCATGGtattCATTCCTAAGGAAGCTGCTACGCCTGCGGCTCAACAGACGACGAAGGAAGAAAATAcCGATCTGAGGTTAGCAAATATCAAATCATTGGCTGAGAAAGACAAAAATGGAAGTCTTGAAATTGATTGTTCGGCGACACTGCCATCGagtaaaattgtttcttttccGAAAaTTGTAACACATGATATGGATTTCGAAGCATTTGCTCAGTTGATGTTGAGTGGATTTACTACAAATTCTTACAAAGGATCGAATAAAAGTGATTCtttgttgaagaaaaatttgCTAAAACTGAAAGCCAAGGCTGGTGAAACTCCAACATATGACGTCATTGTTGACTCTGAGGGAAAcactttcaaaatcaaaaaagaaaatttcttagTTGACTCTTTGAAAATCAAAGAAGAACCATTGGACGAAGATCAGCTCACGAACAAAATATGCGACCCAGATGTGCAAAAAAGAACTGACGAGTTAGAAACacaaataaaagaagaagatgaGTCAGACGAATCAGAAGATGCAGAAGAAGACAATGAACCAGAAATGCCAACACCATTGCCTTTCATTAAAACTGAAAGCAATGATGATAGAGAAGAATCCCAGGAATCGTGTGATTTCAATGACATTATCGAAGAACTATTCGACCGTAAAGTCAAATCAATTGCCCGCGAAAGGAATGGAAAAGTCGATTTTCAGTCGACCAAAAATCAAAACCCCGTTgtacacaaacaaaaaagaggCCGTCCCAAGAAAAagacattttcaataaatccgAAATCTCTTCTCAAAAGCTCACAAGATAAAAAAAAGCGGTCTGCCTTGAAAAGGACAAAGCCAGAGCTTGAAACAGAACTGGAGGCTCAGCCAAACGAACCCGAAACTGCAAAACGGACAAAACTAGCTCCTGAAATAGAACAGAAGTCAATCAATTTCGAAACTGTAGAAACGACAGATCTGACAGAAGCAGAACTGGATGCTGAACTAAGTAGACTCGAAACTGCAAGGCGGAAACTGCTaactttgaaaaattccacCAATTTCAAACACAAATGGCAAAAGCAGAACTcaccaaataaaaagaaaactgccGAAAGCGAAACACCAGTTTTGGAAGAAAAGAAACTTTTAGTGAAAAAACCTCAAGAGagtcttttaaaaaagaaggcAAATGAGAACATACCAGTTAAATACACATCAGCCAAAAAGCCTCGCAAGGGATGGAAATCGATAGCAACTAATGATTGCTTTGATCAAATGGTTGCTATGAAGCTAAAGTCGTCGGCTTCCGATCCCAACATCAAAGATGAAAATTCAGTTCCTGTTGAAAATATCCTCTTAGTCGACGATGCTACCTGCTTACAATCTGGTTCGCATGCAGGaactgattttgaaaaaatgctaGAGAACCTTCAGAAGTTGaaggaaaaccaaaaacagacTGAAAAAACAATTGACCAAGAAGGAATTAGTCAAACTCCGTCTATTCCAACCGCTGTCGATTCTTCTCCTTTAGAGAAAGAGAATAACTTAGCCTTTCCCCAAACAACCATCAATGCCAATAAAGTAGATGACTTAGATGACATGATACGTTCAGTGAAGGTCATCCAAGAACTAAAGAATGAGTACACAAAAGTAGTGGAGATGGCGGATGGCGAACCAGAATGCAGTGCAACAAATATTAAATCTAATTGTTCTTCAACAGAAACAACAGAAACTAAACCCGTGCAGTATATACCGCCTCTTTCGTTTTTTGTTCCCCTCAGAACAGATGAAAAAACATTGGTTCTGGacaaaaaatacaattacaATTGGGTTTGCCCATATTGTCAATTTCAATATAGAACTGCTCTATCGCTCTATGATCACCTTTCCAAAGAACATTCTTACTATACTCCATTTCTCCATGATAAAGAATTTGAACTAAGACCAGACGTGGCAGACGAGGAAACTTTTTGTTACTTGTGCCGGGTAACATTTATCGATACCGAAACTCTCCATAAGCATCTCAAACAGATGCACAGTGAGCAAACAGAAGAAGAGAGAATTGAACTTCGGAAGCGAAAAGCTCAAAACTTTCGATGTAATATATGTGGCAAGATGCTGGCAAATCGAAGCTCTTTGTCCGATCATATTTTAGCGGATTGTGGTAAAAATCCGCAGCATGGGTGTGAagtgtgtggaaagaaattcCACGCAAAGAGTACTCTAAAATTGCACAAAACCATGCATACTGGAGAACTGCCACACTCGTGTACTTTTTGTGAGAAGCGTTTTAGAACGAGAGGTCAACTGACGGTGCATACAAGAACACACACGGGCGAAAAGCCGTTCCCTTGTAAGGTGTGCCATCAGCGATTTACACATCGCGAAACTCTCATATCACACCTCTCACGTCACATCGATATGAAACGCTACAAATGTTATTATTGTGATATGTTATTTTCTTGTATATCTGCGTTAAAGGCGCATCGTGAAATACGCCCAACAACATGTGGTTCGGTTAAACTGAACGCCAGAGCCATAGGACCCCGAGTGCGGGTGATAAAGGGCACTGTCCTGTTCGAGCCCCAACCGGAATTCAATCCAcgacttgtaaaaaaaaagctatCATTTCGAGTATCAGAAAGCCTCAGAAGAGTACTTCACGATCATGATTACTTCCCGGTCGgagaaaaagcaaataaaaagaaacagaatAGTGAAGTTATCAGGAACGAACCCAGTCCCATGGGATAG
- Protein Sequence
- MMVQITTDKSGPKLVCPVCNKAMLSLTGYVKHMKKHEPPGGYCCNYCDERFCLEDHLKKHKDEKHKVLACQICHETFSTPQEYRTHIKDIHHGIDRRMLKCDKCDMEFKTAQALKRHKGTACGTIKPHPCDECNMAFYTKYNLAEHKKIHKGEKKFCCSYCGKSFLSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGARFSCHSNLIKHRRTRPDACGLSMYDSTKETKRNGISRIPASLMSSEIKIVRASKVINPTEEQKTKPVKPKAKPKKPKSDSEDEEVIISRPRRSLRSKEQKNPVAFETIEIKPPESPPKQLDFDSDSNCDDPGFDITAHSDNSSDSDKEEVKFKSFEGDLIETPVKTEEEHRVFEDNFFKNPDSILETILAESDLQVKDEPLDEVKEEEEKQQICEKNVDLPPPQEEVEFVQKKSSTKDNSNAEAPERPKQKRQRAALRKKLRFFKKDRIYDCKYCVKVYHIRKPYEKHLRTTHNLTETELRDIFKEEDNDIPDHLVHRCPICSKIYLMAKRLKTHITFHGADGSLVHKCPGYCKIYFRTKEEAMDHAKTKHKSFFYCDICDKYSQSPESLKIHKRTHYQQRKQANRNLICDKCAKSFASRTSLNDHTRSNCGKDPLYQCEICDKKFSTAGILKTHSLLHKDETPYVCDKCGKAFKIQAQYKTHIKNKHTDHKPFKCDLCPKAYPYRESLLTHMAVHTGLKRYACNGCTEADYDSCSDLIEKTEPEVQNTQCGRPLNVDEDVCVQNSVDSRDSMFEILNSIKEEEYVSEPDELPNEAFYRESCMVFIPKEAATPAAQQTTKEENTDLRLANIKSLAEKDKNGSLEIDCSATLPSSKIVSFPKIVTHDMDFEAFAQLMLSGFTTNSYKGSNKSDSLLKKNLLKLKAKAGETPTYDVIVDSEGNTFKIKKENFLVDSLKIKEEPLDEDQLTNKICDPDVQKRTDELETQIKEEDESDESEDAEEDNEPEMPTPLPFIKTESNDDREESQESCDFNDIIEELFDRKVKSIARERNGKVDFQSTKNQNPVVHKQKRGRPKKKTFSINPKSLLKSSQDKKKRSALKRTKPELETELEAQPNEPETAKRTKLAPEIEQKSINFETVETTDLTEAELDAELSRLETARRKLLTLKNSTNFKHKWQKQNSPNKKKTAESETPVLEEKKLLVKKPQESLLKKKANENIPVKYTSAKKPRKGWKSIATNDCFDQMVAMKLKSSASDPNIKDENSVPVENILLVDDATCLQSGSHAGTDFEKMLENLQKLKENQKQTEKTIDQEGISQTPSIPTAVDSSPLEKENNLAFPQTTINANKVDDLDDMIRSVKVIQELKNEYTKVVEMADGEPECSATNIKSNCSSTETTETKPVQYIPPLSFFVPLRTDEKTLVLDKKYNYNWVCPYCQFQYRTALSLYDHLSKEHSYYTPFLHDKEFELRPDVADEETFCYLCRVTFIDTETLHKHLKQMHSEQTEEERIELRKRKAQNFRCNICGKMLANRSSLSDHILADCGKNPQHGCEVCGKKFHAKSTLKLHKTMHTGELPHSCTFCEKRFRTRGQLTVHTRTHTGEKPFPCKVCHQRFTHRETLISHLSRHIDMKRYKCYYCDMLFSCISALKAHREIRPTTCGSVKLNARAIGPRVRVIKGTVLFEPQPEFNPRLVKKKLSFRVSESLRRVLHDHDYFPVGEKANKKKQNSEVIRNEPSPMG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -