Basic Information

Insect: Melanostoma scalare
Gene Symbol: -
Assembly: GCA_949752695.1
Location: OX456984.1:232270326-232272244[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.3e-08 8.6e-06 27.8 4.6 1 23 204 226 204 226 0.98

2 12 2.2e-05 0.0057 18.9 2.3 1 23 233 255 233 255 0.96

3 12 4.5e-05 0.012 17.9 0.7 1 23 273 295 273 295 0.99

4 12 0.00015 0.04 16.2 2.0 1 23 305 327 305 327 0.98

5 12 8.3e-06 0.0021 20.2 0.1 2 23 334 355 333 355 0.96

6 12 2.8e-05 0.0071 18.6 4.3 1 23 361 383 361 383 0.98

7 12 2.6e-08 6.8e-06 28.1 0.6 1 23 389 411 389 411 0.95

8 12 0.0006 0.16 14.4 2.2 1 23 417 439 417 439 0.99

9 12 4.6e-06 0.0012 21.1 0.5 2 23 446 467 445 467 0.96

10 12 0.0046 1.2 11.6 7.5 1 23 473 495 473 495 0.99

11 12 1.2e-05 0.0032 19.7 1.1 1 23 501 523 501 523 0.98

12 12 1.4e-05 0.0036 19.5 0.7 1 23 529 551 529 551 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.3e-08	8.6e-06	27.8	4.6	1	23	204	226	204	226	0.98
2	12	2.2e-05	0.0057	18.9	2.3	1	23	233	255	233	255	0.96
3	12	4.5e-05	0.012	17.9	0.7	1	23	273	295	273	295	0.99
4	12	0.00015	0.04	16.2	2.0	1	23	305	327	305	327	0.98
5	12	8.3e-06	0.0021	20.2	0.1	2	23	334	355	333	355	0.96
6	12	2.8e-05	0.0071	18.6	4.3	1	23	361	383	361	383	0.98
7	12	2.6e-08	6.8e-06	28.1	0.6	1	23	389	411	389	411	0.95
8	12	0.0006	0.16	14.4	2.2	1	23	417	439	417	439	0.99
9	12	4.6e-06	0.0012	21.1	0.5	2	23	446	467	445	467	0.96
10	12	0.0046	1.2	11.6	7.5	1	23	473	495	473	495	0.99
11	12	1.2e-05	0.0032	19.7	1.1	1	23	501	523	501	523	0.98
12	12	1.4e-05	0.0036	19.5	0.7	1	23	529	551	529	551	0.97

Sequence Information

Coding Sequence: atggatttattTCTATCTGAGAAAATTTGTCGAGCCTGTGTAAAAACAATAAACGAACCGCTACACAATATATTTGATTCACAAATTAATACATTAGACGAATCAATTGATATATCCAAAGTACTTGCTGCTGTTTCCACACTACAAATCAATCCCCAAGATGACCTTCCGAAAGGAATTTGCGTTGAGTGCCTTGAGAGATTGTCGCAAGCTTACAGTTTCCAGAGGATGTGCATTTCGTCGGATCTTTTTATgcgaaatgaaaatattaaaaaatggaataaaattgaagataaCATTTTGCCGCCTGATATGTTGCAACTGGACGTAAAGCAAGAGCATGACCAGTCGATtgaattaaaaactgaaactatAGCTATATCTGACGAAGAAACCAAATCACAAAAGTGTTTGATAGTAGAAAGTTGTCTTAAAGTTAACTCCCTCCAAACTGCGAAAACATTTGAAGAACAATCCGATGGCGACATGACGAATGAGGATCATTATCAAGAGGATAACAGTTCAGATAAAAATGAGCACCAAGTTTTTGAAGATACTAATGGCCAAGAAATCGAGAAGCCCAACCCTCGTAACCAGAGTTATGCTTGCCATACTTGTGAAGATTGTGGAAAAAGCTTTGACCGTCGGTACCATCTCAACCGTCACATGAATGTCCACAAAAAAGAAGGACGGCCCTTCGAATGTGATATTTGTAAACGACGTTTTACAAAGGAAGCCCATTTAAAACGACATGCCATATACCATGAATCAAATTTACTAGAAAAAACTAATCAGTTTAAACAAAACCCCGATGGTTATCAGTGTTCGGATTGTCCGAGAAGATTTCTCAAACAGGAGTCACTTGCCGCCCATAAGCGAACACATAGGAAAAACTCAATTTCTCCTAAACAATACAAGTGTGACATATGCTTAAAGACGTTTACAGGCACATCTCGACTTTCAAGGCATAAAAAAATACACCAAGAGAACCAGAAACTAAGTTGTGACATATGTGGGAAAACTTTTGGTTTAAGTTCTGATTTAATAGACCATCTTAACAAGCACAATGGTGTCAAGCCACATGTTTGTCAGTACTGTGACAAGGCATTCCAGCAAGCATGCACACTTAAGGACCACCTCCGTACTCATACTGGCGAGCAGCCCTTTCTTTGCCCAGAGTGCGGCAAAGCGTTTAACAATTCCAGTAATTTAAGACAGCACCAGTTGCGGCATACTGGTATCAAGCGTTACCAGTGTACAGAATGTCCTAGTAAGTTCACCTGCAAAAGCGGACTTTCCGCCCACATGAGCACGCACTGTAGTCAAAAACCGTGGATATGCGATATATGCGGATCAACGTTTACAAAACAATATTCGTTGAAAAAGCACGAACGAATACACACCGGTGAGAAGCCATACCAATGTGATTACTGTGAAATGAGGTTCAACTGTTCGGATCATATGAAGCGCCATACACGTACACACACTGGAGAGAAGCCATATGCTTGTAGATACTGCGAGAAAAAATTTGCTCAGTCGAACGATATGATAAAACATCTCAGGTCACATGTAGGCAATAACGTTTACAAATGTGATCAGTGTGATGCATCGTTTCGGTTGAGCACAGAGCTTAAGAAACACATATCAGAGCATTATCAAGCTCAATTTATAGAAAGCAAGGAGcagaaaaacatttga
Protein Sequence: MDLFLSEKICRACVKTINEPLHNIFDSQINTLDESIDISKVLAAVSTLQINPQDDLPKGICVECLERLSQAYSFQRMCISSDLFMRNENIKKWNKIEDNILPPDMLQLDVKQEHDQSIELKTETIAISDEETKSQKCLIVESCLKVNSLQTAKTFEEQSDGDMTNEDHYQEDNSSDKNEHQVFEDTNGQEIEKPNPRNQSYACHTCEDCGKSFDRRYHLNRHMNVHKKEGRPFECDICKRRFTKEAHLKRHAIYHESNLLEKTNQFKQNPDGYQCSDCPRRFLKQESLAAHKRTHRKNSISPKQYKCDICLKTFTGTSRLSRHKKIHQENQKLSCDICGKTFGLSSDLIDHLNKHNGVKPHVCQYCDKAFQQACTLKDHLRTHTGEQPFLCPECGKAFNNSSNLRQHQLRHTGIKRYQCTECPSKFTCKSGLSAHMSTHCSQKPWICDICGSTFTKQYSLKKHERIHTGEKPYQCDYCEMRFNCSDHMKRHTRTHTGEKPYACRYCEKKFAQSNDMIKHLRSHVGNNVYKCDQCDASFRLSTELKKHISEHYQAQFIESKEQKNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -