Msca045056.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456986.1:34722193-34724500[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-09 6.8e-06 27.6 0.0 3 34 11 42 9 52 0.90
Sequence Information
- Coding Sequence
- ATGCCTAAATGTACTGGCACATATACAAAAGCGGACCTCGAAAACGCTCTTGAAGCTGTTAGGACACAAAAGATGTCCAAAAAATCTGCAGCCAAATTTTATAACATACCTCGAACTACACTCATATTTCGATTGAGTTCTAAGTTCCAAAAAGCAAGGCCAGGTCCACAAACAGTTCTGTCCGCTGTAGAAGAAGAGTGTTTGGAACAGTGGATAACAACATCCCAGCGAAAAGGTTTCCCGAAAAGGAAAGAGGATGTACTTCATGCCGTAAAGGGTTTTCTTGAAGAAGACAAAAGGGAACATCCTTTTGGGCCACAAAACATTCCGGGGAATGGCTGGTTTAAGGCATTTTTGAGCCGACACCCTTCAATTAGCCTTAGAACTCCAGATCCGGTAACATCGGCCAGCGCAGCAGTTGGATCATCCGACATCCAATCGTGGTTTGTTTCAATCGAAAAATATCTTGAGGAGCAGAGCCTGTTGGCTATTTTAAGCGATGCTACCAGAGTTTACAATGGGGATGAAACCAATTTTTTACTGTGCCCAAAAACCAAAACCGTTTTGGCAGCAAAGGGTGCACGAAACATATACGAGGTGGACCGAGGACTTGCAAAATCCAACTTAACGGTCATGTTTTCTTTCTCTGCATCGGGTATTTTGGTCCCACCTATGGTTATTTATCCATATAAAAGAATACCGGAAGATATCAGAAAATCATTGCCCAAGGGATGGGGCCTTGGTATAAGTGACAATGGATGGATGACCAAAGAAGTGTTTTATGAATACATTTCGAAAGTATTTCACCCACATCTTGTCAGCGTTGGAACCATTTTTCctgttatattttttgttgacgGTCATGCCACTCACCTTACATTACCGGTCAGCAAACTATGTGTCCAGCTTGGAATCATATTAATTGCATTATATCCTAATGCCACAAGAATTTTACAGCCGGCGGATGTTTCCGCTTTCAAGCCGTTGAAAAATGGTTGGAATAAGAAGGTTTCTGAGTGGCGCCGACAAAACAGTGGTGAGTCCCTCACACGACAAAAGTTTGCTCCTTTACTAGAAGAAGTAATCCTCTCATCAATTTCACCAGAAATTATTCAAAAAGGATTTAGAGCTTGTGGGCTTTTTCCTTGGGATGTCAATGCGATTGATTTCTCCAGGTGTCTAGGGAGATCATCAAAGACGCAATTAACACCTGTGTCCACTCAAGAGCAAAACTCAACGAGCAATATAAGCATTTGTTATAAAACTTTCTCAGAATTGGTTGGCACTCAGAAGCTGGAAGAATTCGAAAACgcttataataaaataataagcaCTTTGTTTTATTCGGAAGAGTGGAACATATTatacaaaatgtttttgaaatttaagccgGACGCTATATCTACAAACAACAATATAGAGGATAATGCAGTCAATTCCGCCGATTTCTTCGATGAATTGGATATAAATAATATACAGGAATTCATATATGATACAGAGACTGTTCCAAATGAAGTTCAAGATAACGAACTAATGCTAAATAGCATAGTCACTATAAGTGGTATTGACAACTACTTGGATTGGCCAATTACTCCAGAACGGCAGGGTATCAAGCCTATGAAGCCAAAAAGATCGTTCGTAATAACGGACGATTTATGGATTAAAACGGAACAGATAAAAAAGGAAgcgaaaattaaagaaaatttactaaaggaagaaagaaaaattaagagGCTTGAAAATAAGACCAAGAAggaaacaacaaagaaaagatTGACTAAGAAAGTCACAATTAAGAAACAACCGATAAAAAGTAGCCAAACATCCGCACGAAAATCTCTGACAACACCAAATCAAACTGTTTCTGCAACCTTCCAACTTTCGGTGAAGCAAAATCTCGAGGCCGAGTCCATTAGTAATCCTGTTATTagTTTAAAACTAAAGGACAATACCGAAAATAAAGGAACACAACATGTACGAAATCTCTTTCAAAGCCTTGGAGAAAACAAAATCGCAAATGGGAAGATATGTTATGAATGCACACTTTCTATGAGGACTAAAACGGGAATAAAATGCAATAAGTGCACCAGAGAAATGCACATTTCATGCATTGAAAAACTAAACTTGCCGTACCTCCCTGTCTTTAAATGCGGCAAGTGCATAAATAAGAATTAA
- Protein Sequence
- MPKCTGTYTKADLENALEAVRTQKMSKKSAAKFYNIPRTTLIFRLSSKFQKARPGPQTVLSAVEEECLEQWITTSQRKGFPKRKEDVLHAVKGFLEEDKREHPFGPQNIPGNGWFKAFLSRHPSISLRTPDPVTSASAAVGSSDIQSWFVSIEKYLEEQSLLAILSDATRVYNGDETNFLLCPKTKTVLAAKGARNIYEVDRGLAKSNLTVMFSFSASGILVPPMVIYPYKRIPEDIRKSLPKGWGLGISDNGWMTKEVFYEYISKVFHPHLVSVGTIFPVIFFVDGHATHLTLPVSKLCVQLGIILIALYPNATRILQPADVSAFKPLKNGWNKKVSEWRRQNSGESLTRQKFAPLLEEVILSSISPEIIQKGFRACGLFPWDVNAIDFSRCLGRSSKTQLTPVSTQEQNSTSNISICYKTFSELVGTQKLEEFENAYNKIISTLFYSEEWNILYKMFLKFKPDAISTNNNIEDNAVNSADFFDELDINNIQEFIYDTETVPNEVQDNELMLNSIVTISGIDNYLDWPITPERQGIKPMKPKRSFVITDDLWIKTEQIKKEAKIKENLLKEERKIKRLENKTKKETTKKRLTKKVTIKKQPIKSSQTSARKSLTTPNQTVSATFQLSVKQNLEAESISNPVISLKLKDNTENKGTQHVRNLFQSLGENKIANGKICYECTLSMRTKTGIKCNKCTREMHISCIEKLNLPYLPVFKCGKCINKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00976401;
- 90% Identity
- iTF_00976401;
- 80% Identity
- iTF_00976401;